Rh5AG080600

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
6880262 .. 6892736
12475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG080600.1

Sequence Viewer

Length: 1281 bp
ATGGGTTCATCTTCTTCACCATATTTGATCAACTTCCTCCTCATATTACCATCAATCATCATCCCAAAAGCTCTTGGTTGCTACAGTGCAATCTTCAGCTTTGGTGATTCGATTACTGATACTGGCAACTTATATATCAGCTCCAAGAACAGTTCTTTCCACTTCTTCTTCCCTCCATATGGGGAGACCTACTTTCATCGCCCCACCGGACGATGCTCCGATGGTCGCTTGATCATAGACTTCATTGCTGAGTATCTGGGACTTCCACATGTTAGACCTTATCTTGAACTCAAAAGCAATGCAAGTGCTCAAAACTTCAAAGGGGCAGTGAATTTTGCGATGGTAGGAGCCACGGCGCTTGATGCGGCATTTCTAGCAGCAATGGGAGATCATAATGATTATACAAACAGCTCTCTAGGAACTCAACTGGATTGGTTTAAAGAAATGCTGCCTTCTTTATGCAATACATCTTCAAATTGCAAGAAACTTCTCTCCAGCTCCCTAGTTCTTGTGGGAGAGATTGGAGGCAACGATTACAACGATGCATTGTTGGCAGGGAAAAGTATAGAACAGGTTCAAACATATGTACCATTAGTAATAGAAGAAATCTCTACAACAATCAAAGAGTTAATTGAGCTTGGGGCAATGACACTTATGGTACCTGGCAACTTTCCAATCGGTTGCCTTCCCATTTATCTTACAAAATTTCGGACTTCGGATGAAAAGCAGTACGACTCCTCGACAGGTTGTCTGAATTGGTTAAACAAGTTTGCTGAATATCACAATGACCAGCTTCAAACAGAACTAAGTCAGGTTCAAAGGCTTCACCCCAATGTCAACATCATTTATGCAGATTATTACAATGCTGATTTATTGGGGGAACAGTCGAAGCATGCTGTGGAGGGGGAGGACCATACAATTACAACTCATCGGCACAATGTGGCTCTCTGGAGGCAAGTGCTTGTGAAAACCCTTCACAGTTTATCAACTGGGATGATCTCATTAAACAATTTTACAAGAGGACGTCTTCACACATTGATAACTTCTACATTTAGTCATGTTGATATTGGGCATATCATTTCTAACATGATTGGACTGTATTTTTTTGGGATCAATGAGCCATGGAAAGATTATCTCAGCAACAAGGAGGAAGAGGCAGAAGGGCACCACCAAGAGGAACGTCTTGAGGAGATTGCACGTGACGGCCACGAGGCCCTTGCAAAGGCCGTCGAGCATGAAGAGGAGGACCATCACGGCCTCTGCGCCGGCAGCGTAGCCTAG

Protein Analysis

426

Amino Acids

47.44

Weight (kDa)

5.32

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 288 3.6e-24 GDSL-like Lipase/Acylhydrolase
Rhomboid PF01694 341 - 372 9.6e-06 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1027
Acc65I GGTACC 1 cut(s) 658
AccB1I GGYRCC 2 cut(s) 658, 1164
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 1118
AcoI YGGCCR 1 cut(s) 1204
AcsI RAATTY 2 cut(s) 331, 704
AcuI CTGAAG 1 cut(s) 79
AcvI CACGTG 1 cut(s) 1199
AcyI GRCGYC 1 cut(s) 1024
AdeI CACNNNGTG 1 cut(s) 940
AfaI GTAC 3 cut(s) 588, 660, 731
AfiI CCNNNNNNNGG 3 cut(s) 179, 1174, 1222
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 6 cut(s) 287, 319, 474, 578, 797, 818
AhdI GACNNNNNGTC 1 cut(s) 747
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 7 cut(s) 71, 99, 141, 411, 498, 637, 793
AluI AGCT 7 cut(s) 71, 99, 141, 411, 498, 637, 793
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 1118
AoxI GGCC 4 cut(s) 1204, 1212, 1224, 1255
ApeKI GCWGC 3 cut(s) 377, 448, 1269
ApoI RAATTY 2 cut(s) 331, 704
Asp700I GAANNNNTTC 1 cut(s) 573
Asp718I GGTACC 1 cut(s) 658
AspLEI GCGC 2 cut(s) 358, 1265
AspS9I GGNCC 3 cut(s) 910, 1213, 1246
AsuHPI GGTGA 3 cut(s) 9, 116, 818
AvaII GGWCC 2 cut(s) 910, 1246
BaeGI GKGCMC 1 cut(s) 1167
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BanI GGYRCC 2 cut(s) 658, 1164
BauI CACGAG 1 cut(s) 1208
BbrPI CACGTG 1 cut(s) 1199
BbsI GAAGAC 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 389, 435
BccI CCATC 4 cut(s) 58, 215, 334, 1257
BceAI ACGGC 4 cut(s) 369, 1211, 1219, 1270
BcgI CGANNNNNNTGC 2 cut(s) 1199, 1233
BciT130I CCWGG 1 cut(s) 663
BclI TGATCA 2 cut(s) 27, 231
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 4 cut(s) 374, 416, 503, 1279
BfmI CTRYAG 1 cut(s) 82
BfoI RGCGCY 1 cut(s) 359
BisI GCNGC 4 cut(s) 366, 378, 449, 1270
BlsI GCNGC 4 cut(s) 367, 379, 450, 1271
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 2 cut(s) 910, 1246
BmeRI GACNNNNNGTC 1 cut(s) 747
BmgT120I GGNCC 3 cut(s) 910, 1213, 1246
BmiI GGNNCC 3 cut(s) 349, 660, 1166
BmrFI CCNGG 1 cut(s) 663
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 3 cut(s) 203, 352, 532
BmuI ACTGGG 1 cut(s) 999
BpiI GAAGAC 1 cut(s) 1019
BpmI CTGGAG 2 cut(s) 478, 970
BpuEI CTTGAG 1 cut(s) 1205
BsaAI YACGTR 1 cut(s) 1199
BsaHI GRCGYC 1 cut(s) 1024
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 351, 1121
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 1174, 1222
Bse118I RCCGGY 1 cut(s) 1265
Bse1I ACTGG 3 cut(s) 127, 432, 994
Bse3DI GCAATG 4 cut(s) 243, 304, 387, 651
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 351, 1121
BseGI GGATG 3 cut(s) 60, 724, 999
BseLI CCNNNNNNNGG 3 cut(s) 179, 1174, 1222
BseMI GCAATG 4 cut(s) 243, 304, 387, 651
BseMII CTCAG 2 cut(s) 240, 1150
BseNI ACTGG 3 cut(s) 127, 432, 994
BseRI GAGGAG 4 cut(s) 29, 727, 1202, 1256
BseSI GKGCMC 1 cut(s) 1167
BseXI GCAGC 2 cut(s) 389, 435
BshFI GGCC 4 cut(s) 1206, 1214, 1226, 1257
BshNI GGYRCC 2 cut(s) 658, 1164
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 207, 1266
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 3 cut(s) 179, 1174, 1222
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 4 cut(s) 1206, 1214, 1226, 1257
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 310, 1167
Bsp143I GATC 5 cut(s) 27, 231, 388, 996, 1110
Bsp19I CCATGG 1 cut(s) 1121
BspACI CCGC 1 cut(s) 365
BspANI GGCC 4 cut(s) 1206, 1214, 1226, 1257
BspCNI CTCAG 2 cut(s) 241, 1149
BspLI GGNNCC 3 cut(s) 349, 660, 1166
BspPI GGATC 1 cut(s) 1118
BspT107I GGYRCC 2 cut(s) 658, 1164
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 4 cut(s) 243, 304, 387, 651
BsrFI RCCGGY 1 cut(s) 1265
BsrI ACTGG 3 cut(s) 127, 432, 994
BssAI RCCGGY 1 cut(s) 1265
BssECI CCNNGG 2 cut(s) 351, 1121
BssMI GATC 5 cut(s) 27, 231, 388, 996, 1110
BssNI GRCGYC 1 cut(s) 1024
BssSI CACGAG 1 cut(s) 1208
BssT1I CCWWGG 1 cut(s) 1121
Bst2BI CACGAG 1 cut(s) 1208
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 5 cut(s) 86, 152, 885, 980, 1098
Bst6I CTCTTC 2 cut(s) 1146, 1233
BstACI GRCGYC 1 cut(s) 1024
BstBAI YACGTR 1 cut(s) 1199
BstC8I GCNNGC 2 cut(s) 894, 1267
BstDEI CTNAG 3 cut(s) 249, 806, 1136
BstDSI CCRYGG 2 cut(s) 351, 1121
BstENI CCTNNNNNAGG 1 cut(s) 1220
BstF5I GGATG 3 cut(s) 60, 724, 999
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 2 cut(s) 358, 1265
BstKTI GATC 5 cut(s) 30, 234, 391, 999, 1113
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 5 cut(s) 27, 231, 388, 996, 1110
BstMWI GCNNNNNNNGC 4 cut(s) 362, 374, 551, 1269
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 2 cut(s) 272, 896
BstSCI CCNGG 1 cut(s) 661
BstSFI CTRYAG 1 cut(s) 82
BstSLI GKGCMC 1 cut(s) 1167
BstV1I GCAGC 2 cut(s) 389, 435
BstV2I GAAGAC 1 cut(s) 1019
BsuRI GGCC 4 cut(s) 1206, 1214, 1226, 1257
BtgI CCRYGG 2 cut(s) 351, 1121
BtgZI GCGATG 2 cut(s) 182, 353
BtsCI GGATG 3 cut(s) 60, 724, 999
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 91, 333
Cac8I GCNNGC 2 cut(s) 894, 1267
CfoI GCGC 2 cut(s) 358, 1265
Cfr10I RCCGGY 1 cut(s) 1265
Cfr13I GGNCC 3 cut(s) 910, 1213, 1246
Csp6I GTAC 3 cut(s) 587, 659, 730
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 6 cut(s) 269, 893, 1058, 1087, 1122, 1235
CviQI GTAC 3 cut(s) 587, 659, 730
DdeI CTNAG 3 cut(s) 249, 806, 1136
DpnI GATC 5 cut(s) 29, 233, 390, 998, 1112
DpnII GATC 5 cut(s) 27, 231, 388, 996, 1110
DraI TTTAAA 1 cut(s) 439
DraIII CACNNNGTG 1 cut(s) 940
DriI GACNNNNNGTC 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 1204
Eam1104I CTCTTC 2 cut(s) 1146, 1233
Eam1105I GACNNNNNGTC 1 cut(s) 747
EarI CTCTTC 2 cut(s) 1146, 1233
Eco130I CCWWGG 1 cut(s) 1121
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 910, 1246
Eco57I CTGAAG 1 cut(s) 79
Eco72I CACGTG 1 cut(s) 1199
EcoNI CCTNNNNNAGG 1 cut(s) 1220
EcoO109I RGGNCCY 1 cut(s) 1213
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 1121
EcoT22I ATGCAT 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 1121
FaeI CATG 6 cut(s) 272, 896, 1061, 1090, 1125, 1238
FaqI GGGAC 1 cut(s) 273
FatI CATG 6 cut(s) 268, 892, 1057, 1086, 1121, 1234
FauNDI CATATG 2 cut(s) 178, 583
FbaI TGATCA 2 cut(s) 27, 231
Fnu4HI GCNGC 4 cut(s) 366, 378, 449, 1270
FokI GGATG 3 cut(s) 47, 731, 1006
Fsp4HI GCNGC 4 cut(s) 366, 378, 449, 1270
FspBI CTAG 4 cut(s) 374, 416, 503, 1279
GlaI GCGC 2 cut(s) 357, 1264
GluI GCNGC 4 cut(s) 366, 378, 449, 1270
GsuI CTGGAG 2 cut(s) 478, 970
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 4 cut(s) 1206, 1214, 1226, 1257
HapII CCGG 2 cut(s) 207, 1266
HhaI GCGC 2 cut(s) 358, 1265
Hin1I GRCGYC 1 cut(s) 1024
Hin1II CATG 6 cut(s) 272, 896, 1061, 1090, 1125, 1238
Hin6I GCGC 2 cut(s) 356, 1263
HinP1I GCGC 2 cut(s) 356, 1263
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HinfI GANTC 2 cut(s) 107, 734
HpaII CCGG 2 cut(s) 207, 1266
HphI GGTGA 3 cut(s) 9, 116, 818
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 4 cut(s) 220, 711, 718, 753
Hpy188III TCNNGA 3 cut(s) 284, 949, 1184
Hpy8I GTNNAC 1 cut(s) 838
Hpy99I CGWCG 1 cut(s) 1232
HpyAV CCTTC 4 cut(s) 462, 695, 983, 1154
HpyCH4III ACNGT 5 cut(s) 86, 152, 885, 980, 1098
HpyCH4IV ACGT 3 cut(s) 1024, 1180, 1198
HpyCH4V TGCA 8 cut(s) 89, 302, 462, 480, 545, 851, 1196, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 374, 551, 1269
HpyF3I CTNAG 3 cut(s) 249, 806, 1136
HpySE526I ACGT 3 cut(s) 1024, 1180, 1198
Hsp92I GRCGYC 1 cut(s) 1024
Hsp92II CATG 6 cut(s) 272, 896, 1061, 1090, 1125, 1238
HspAI GCGC 2 cut(s) 356, 1263
KpnI GGTACC 1 cut(s) 662
KroI GCCGGC 1 cut(s) 1265
KroNI GCCGGC 1 cut(s) 1267
Ksp22I TGATCA 2 cut(s) 27, 231
Kzo9I GATC 5 cut(s) 27, 231, 388, 996, 1110
LmnI GCTCC 4 cut(s) 146, 221, 347, 503
Lsp1109I GCAGC 2 cut(s) 389, 435
LweI GCATC 3 cut(s) 203, 352, 532
MaeI CTAG 4 cut(s) 374, 416, 503, 1279
MaeII ACGT 3 cut(s) 1024, 1180, 1198
MaeIII GTNAC 1 cut(s) 1199
MalI GATC 5 cut(s) 29, 233, 390, 998, 1112
MboI GATC 5 cut(s) 27, 231, 388, 996, 1110
MhlI GDGCHC 2 cut(s) 310, 1167
MluCI AATT 7 cut(s) 331, 475, 630, 704, 754, 918, 1009
MlyI GAGTC 1 cut(s) 728
Mph1103I ATGCAT 1 cut(s) 547
MroNI GCCGGC 1 cut(s) 1265
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 4 cut(s) 438, 629, 761, 1004
MslI CAYNNNNRTG 1 cut(s) 831
MspI CCGG 2 cut(s) 207, 1266
MspR9I CCNGG 1 cut(s) 663
MvaI CCWGG 1 cut(s) 663
MwoI GCNNNNNNNGC 4 cut(s) 362, 374, 551, 1269
NaeI GCCGGC 1 cut(s) 1267
NcoI CCATGG 1 cut(s) 1121
NdeI CATATG 2 cut(s) 178, 583
NdeII GATC 5 cut(s) 27, 231, 388, 996, 1110
NgoMIV GCCGGC 1 cut(s) 1265
NlaIII CATG 6 cut(s) 272, 896, 1061, 1090, 1125, 1238
NlaIV GGNNCC 3 cut(s) 349, 660, 1166
NmuCI GTSAC 1 cut(s) 1199
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 2 cut(s) 272, 896
PaeI GCATGC 1 cut(s) 896
PciI ACATGT 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PdiI GCCGGC 1 cut(s) 1267
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 4 cut(s) 367, 379, 450, 1271
PleI GAGTC 1 cut(s) 728
PmaCI CACGTG 1 cut(s) 1199
PmlI CACGTG 1 cut(s) 1199
PpsI GAGTC 1 cut(s) 728
Ppu21I YACGTR 1 cut(s) 1199
PscI ACATGT 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 661
PspCI CACGTG 1 cut(s) 1199
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 3 cut(s) 349, 660, 1166
PspPI GGNCC 3 cut(s) 910, 1213, 1246
RsaI GTAC 3 cut(s) 588, 660, 731
RsaNI GTAC 3 cut(s) 587, 659, 730
RseI CAYNNNNRTG 1 cut(s) 831
SaqAI TTAA 4 cut(s) 438, 629, 761, 1004
SatI GCNGC 4 cut(s) 366, 378, 449, 1270
Sau3AI GATC 5 cut(s) 27, 231, 388, 996, 1110
Sau96I GGNCC 3 cut(s) 910, 1213, 1246
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 1 cut(s) 663
SduI GDGCHC 2 cut(s) 310, 1167
SfaNI GCATC 3 cut(s) 203, 352, 532
SfcI CTRYAG 1 cut(s) 82
SinI GGWCC 2 cut(s) 910, 1246
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 1 cut(s) 1184
SmoI CTYRAG 1 cut(s) 1184
SphI GCATGC 1 cut(s) 896
Sse9I AATT 7 cut(s) 331, 475, 630, 704, 754, 918, 1009
SsiI CCGC 1 cut(s) 365
SspMI CTAG 4 cut(s) 374, 416, 503, 1279
StyD4I CCNGG 1 cut(s) 661
StyI CCWWGG 1 cut(s) 1121
TaaI ACNGT 5 cut(s) 86, 152, 885, 980, 1098
TaiI ACGT 3 cut(s) 1027, 1183, 1201
TaqI TCGA 4 cut(s) 110, 740, 887, 1230
TasI AATT 7 cut(s) 331, 475, 630, 704, 754, 918, 1009
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 4 cut(s) 438, 629, 761, 1004
Tru9I TTAA 4 cut(s) 438, 629, 761, 1004
TscAI CASTG 2 cut(s) 91, 333
TseFI GTSAC 1 cut(s) 1199
TseI GCWGC 3 cut(s) 377, 448, 1269
Tsp45I GTSAC 1 cut(s) 1199
TspDTI ATGAA 4 cut(s) 185, 232, 735, 1251
TspRI CASTG 2 cut(s) 91, 333
VpaK11BI GGWCC 2 cut(s) 910, 1246
XagI CCTNNNNNAGG 1 cut(s) 1220
XapI RAATTY 2 cut(s) 331, 704
XceI RCATGY 2 cut(s) 272, 896
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 4 cut(s) 374, 416, 503, 1279
ZraI GACGTC 1 cut(s) 1025
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.