Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

10053443 .. 10055881

Gene Structure 2439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGTCACTAGATTCTCTAGTGAGCTTCTTTTTATCTACCCTTTTTGTCACAATCGTGAGCTCACAAACGCAGTGCCGGAATCTCGAGTCGATTATCAGTTTCGGTGATTCGATTACCGACACAGGAAACTTGGTTGGTCTCTCGGATCGTAACCATCTTCCTGTGACCGCGTTTCTGCCGTATGGAGAAACCTTCTTCCACCACCCAACTGGCCGTTCCTGCAACGGCCGTATCATCATCGACTTTATCGCTGAATTCTTAGGGTTACCGCATGTGCCTCCTTTTTATGGATCTAAAAATGGAAACTTTGAGAAAGGAGTTAATTTCGCTGTTGCGGGAGCAACGGCACTAGAAACTTCCATTCTTGAGAAGAGAGGAATTTATTATCCTCACAGCAACATCAGTTTGGGAATTCAGCTTAAGACCTTCAAGGAGAGCTTACCAAATCTATGTGGTTCACCTACAGATTGTAGAGATATGATTGGAAATGCTTTTATTATCATGGGAGAGATTGGAGGGAATGATTTTAATTTCGCATTCTTTGTGAACAAAACCAGTGAGGTCAAAGAGTTGGTTCCGTTGGTGATCACTAAAATTTCTTCTGCAATTGTGGTAAACATTCTTGATCAGCGAGTCCCTAGAACGAGTAATTTTTTCAAAAAACTGTTATGTTTTTTGTTTTGTTTTTGTGTTTTGGTACTGAATGTTGAATCTAGGAGTTGGTCGATATGGGAGGAAGAACATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

250

Amino Acids

27.72

Weight (kDa)

5.86

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	32 - 355	4.2e-33	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	171, 272, 338
AclWI	GGATC	2 cut(s)	156, 301
AcoI	YGGCCR	2 cut(s)	214, 229
AcsI	RAATTY	4 cut(s)	257, 381, 414, 597
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	433, 661, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	4 cut(s)	27, 63, 421, 441
AluI	AGCT	4 cut(s)	27, 63, 421, 441
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	156, 301
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	214, 229
ApoI	RAATTY	4 cut(s)	257, 381, 414, 597
AsuHPI	GGTGA	3 cut(s)	119, 453, 598
AvaI	CYCGRG	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BanII	GRGCYC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	65
BccI	CCATC	1 cut(s)	165
BceAI	ACGGC	5 cut(s)	166, 201, 216, 244, 363
BclI	TGATCA	2 cut(s)	588, 628
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	6 cut(s)	11, 20, 353, 642, 717, 751
BfmI	CTRYAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	217, 558
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	217, 558
BseX3I	CGGCCG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	216, 231
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	2 cut(s)	216, 231
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	148, 293, 588, 628
BspACI	CCGC	3 cut(s)	171, 272, 338
BspANI	GGCC	2 cut(s)	216, 231
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	156, 301
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	217, 558
BssMI	GATC	4 cut(s)	148, 293, 588, 628
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	669
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	262
BstEII	GGTNACC	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	4 cut(s)	151, 296, 591, 631
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	148, 293, 588, 628
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	278
BstPI	GGTNACC	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	293
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	216, 231
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 565
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	2 cut(s)	275, 505
CviJI	RGCY	6 cut(s)	27, 63, 216, 231, 421, 441
CviKI_1	RGCY	6 cut(s)	27, 63, 216, 231, 421, 441
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	4 cut(s)	150, 295, 590, 630
DpnII	GATC	4 cut(s)	148, 293, 588, 628
EaeI	YGGCCR	2 cut(s)	214, 229
EagI	CGGCCG	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	146
Eco52I	CGGCCG	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	267
EcoRI	GAATTC	2 cut(s)	257, 414
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	2 cut(s)	278, 508
FaiI	YATR	8 cut(s)	186, 276, 291, 454, 482, 506, 673, 733
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	2 cut(s)	274, 504
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	2 cut(s)	588, 628
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	6 cut(s)	11, 20, 353, 642, 717, 751
HaeIII	GGCC	2 cut(s)	216, 231
HapII	CCGG	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	278, 508
HinfI	GANTC	6 cut(s)	14, 82, 89, 110, 636, 713
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	3 cut(s)	119, 453, 598
Hpy166II	GTNNAC	3 cut(s)	461, 550, 619
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	4 cut(s)	58, 86, 368, 626
Hpy8I	GTNNAC	3 cut(s)	461, 550, 619
HpyAV	CCTTC	2 cut(s)	205, 439
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4V	TGCA	2 cut(s)	225, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	278, 508
Ksp22I	TGATCA	2 cut(s)	588, 628
Kzo9I	GATC	4 cut(s)	148, 293, 588, 628
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	6 cut(s)	92, 111, 177, 198, 235, 571
MaeI	CTAG	6 cut(s)	11, 20, 353, 642, 717, 751
MaeIII	GTNAC	5 cut(s)	6, 49, 152, 166, 267
MalI	GATC	4 cut(s)	150, 295, 590, 630
MboI	GATC	4 cut(s)	148, 293, 588, 628
MboII	GAAGA	5 cut(s)	152, 190, 385, 594, 752
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	8 cut(s)	257, 325, 381, 414, 532, 597, 609, 652
MlyI	GAGTC	2 cut(s)	98, 645
MnlI	CCTC	6 cut(s)	291, 371, 402, 512, 556, 730
MseI	TTAA	3 cut(s)	324, 423, 531
MslI	CAYNNNNRTG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	539
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	4 cut(s)	148, 293, 588, 628
NlaIII	CATG	2 cut(s)	278, 508
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	3 cut(s)	6, 49, 166
NspI	RCATGY	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	56
PaeR7I	CTCGAG	1 cut(s)	86
PctI	GAATGC	1 cut(s)	539
PfeI	GAWTC	4 cut(s)	14, 82, 110, 713
PleI	GAGTC	2 cut(s)	97, 644
PpsI	GAGTC	2 cut(s)	97, 644
Psp124BI	GAGCTC	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	579
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	324, 423, 531
Sau3AI	GATC	4 cut(s)	148, 293, 588, 628
SchI	GAGTC	2 cut(s)	98, 645
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	8 cut(s)	29, 65, 197, 423, 431, 443, 466, 567
SfcI	CTRYAG	1 cut(s)	465
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	86, 368, 422
SmoI	CTYRAG	3 cut(s)	86, 368, 422
Sse9I	AATT	8 cut(s)	257, 325, 381, 414, 532, 597, 609, 652
SsiI	CCGC	3 cut(s)	171, 272, 338
SspMI	CTAG	6 cut(s)	11, 20, 353, 642, 717, 751
SstI	GAGCTC	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	669
TaqI	TCGA	5 cut(s)	87, 92, 113, 243, 728
TasI	AATT	8 cut(s)	257, 325, 381, 414, 532, 597, 609, 652
TfiI	GAWTC	4 cut(s)	14, 82, 110, 713
Tru1I	TTAA	3 cut(s)	324, 423, 531
Tru9I	TTAA	3 cut(s)	324, 423, 531
TscAI	CASTG	2 cut(s)	80, 565
TseFI	GTSAC	3 cut(s)	6, 49, 166
Tsp45I	GTSAC	3 cut(s)	6, 49, 166
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	2 cut(s)	80, 565
Vha464I	CTTAAG	1 cut(s)	422
XapI	RAATTY	4 cut(s)	257, 381, 414, 597
XceI	RCATGY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XhoI	CTCGAG	1 cut(s)	86
XspI	CTAG	6 cut(s)	11, 20, 353, 642, 717, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.