Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

28949444 .. 28950054

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGTTCATCTTTCCAACAATATTATTGGATGAACTTCCTCCTCTTACTAGTTTTCATACTCATCCCTCATGCCTCATGCTGCTTCAGTTCAATTTTCAGCTTTGGCGATTCACTAGCTGATACCGGAAACTTAAAGATCAGCTCTCCTAACGAGACTGTCCACTTCTTCTTCCCTCCATATGGGATGACCTACTTTCATCTCCCCACCGGACGCTGCTCCGATGGTCGCTTAGTCATAGACTTCATCGCTGAATATCTCGGACTTCCGCTTGTTCGACCTTATCTCGAAAGCCAAAAAAGTATCCAAAACTTTGAAGGGGGAGTGAATTTCGCCGTGGCAGGAGCCACGGCCCTTGACGCCACCTTTCTTGAAGAAATGGGAGACTCTAATCCACGTACCAACAACTCTCTGGGAATTCAAATGGACTGGTTTAAAGAAATTCTTCCATATTTTTGCAACATATCTTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

159

Amino Acids

17.79

Weight (kDa)

4.81

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	32 - 138	3.3e-11	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	269
AcsI	RAATTY	3 cut(s)	328, 417, 441
AcuI	CTGAAG	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	93, 317, 374, 422, 471
AhlI	ACTAGT	1 cut(s)	49
AluBI	AGCT	3 cut(s)	102, 119, 144
AluI	AGCT	3 cut(s)	102, 119, 144
Alw26I	GTCTC	2 cut(s)	149, 378
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	81, 216
ApoI	RAATTY	3 cut(s)	328, 417, 441
Asp700I	GAANNNNTTC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	68, 203
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	2 cut(s)	320, 366
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	149, 378
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	2 cut(s)	50, 116
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	2 cut(s)	82, 217
BlsI	GCNGC	2 cut(s)	83, 218
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	336, 348
BsaWI	WCCGGW	2 cut(s)	125, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	336, 348
BseGI	GGATG	3 cut(s)	36, 63, 192
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	68, 203
BshFI	GGCC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	126, 210
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	149, 378
BsnI	GGCC	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	336, 348
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	232
BstDSI	CCRYGG	2 cut(s)	336, 348
BstF5I	GGATG	3 cut(s)	36, 63, 192
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	149, 378
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstV1I	GCAGC	2 cut(s)	68, 203
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	2 cut(s)	336, 348
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	36, 63, 192
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	2 cut(s)	222, 368
Csp6I	GTAC	1 cut(s)	399
CspCI	CAANNNNNGTGG	4 cut(s)	337, 352, 372, 387
CviAII	CATG	2 cut(s)	71, 78
CviJI	RGCY	6 cut(s)	102, 119, 144, 294, 347, 353
CviKI_1	RGCY	6 cut(s)	102, 119, 144, 294, 347, 353
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
DraI	TTTAAA	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	417
FaeI	CATG	2 cut(s)	74, 81
FaiI	YATR	8 cut(s)	59, 72, 79, 181, 183, 239, 451, 464
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	2 cut(s)	70, 77
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	82, 217
FokI	GGATG	3 cut(s)	43, 50, 199
Fsp4HI	GCNGC	2 cut(s)	82, 217
FspBI	CTAG	2 cut(s)	50, 116
GluI	GCNGC	2 cut(s)	82, 217
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	2 cut(s)	126, 210
HgaI	GACGC	2 cut(s)	222, 368
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	74, 81
HinfI	GANTC	2 cut(s)	110, 386
HpaII	CCGG	2 cut(s)	126, 210
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	223, 263
Hpy188III	TCNNGA	3 cut(s)	287, 371, 471
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	74, 81
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	224, 344
LpnPI	CCDG	5 cut(s)	139, 223, 327, 398, 415
Lsp1109I	GCAGC	2 cut(s)	68, 203
MaeI	CTAG	2 cut(s)	50, 116
MaeII	ACGT	1 cut(s)	397
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	5 cut(s)	160, 163, 386, 437, 459
MluCI	AATT	4 cut(s)	93, 328, 417, 441
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	50, 53, 78, 85, 186
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	2 cut(s)	134, 435
MspI	CCGG	2 cut(s)	126, 210
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	2 cut(s)	74, 81
NlaIV	GGNNCC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	83, 218
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Ppu21I	YACGTR	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	134, 435
SatI	GCNGC	2 cut(s)	82, 217
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	380
SetI	ASST	7 cut(s)	104, 121, 146, 194, 283, 368, 400
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	4 cut(s)	93, 328, 417, 441
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	2 cut(s)	50, 116
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	277, 288
TasI	AATT	4 cut(s)	93, 328, 417, 441
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	134, 435
Tru9I	TTAA	2 cut(s)	134, 435
TseI	GCWGC	2 cut(s)	81, 216
TspDTI	ATGAA	4 cut(s)	46, 47, 188, 235
XapI	RAATTY	3 cut(s)	328, 417, 441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	50, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.