MD10G1283200.v1.1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
37350769 .. 37354417
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1283200.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGCTTGGTATTATCGGGCAAGTTTGACCATGCACGTCCTCCTTCTCCTAACAGTTGTGATCATCCCGTACGCGAATTGTGGCTACACATCTATCATTGGGTTTGGGGATTCACTTGCTGATACTGGCAACGAATACATCTATGCCCTTGACCACCATAAGGGTCCGTACCACTTCCTCTTCCCTCCAAATGGGGAGACCTACTTTCATCACCCCACCGGGCGCTGCTGCGACGGTCGTTTAATGATAGACCTCATTGCTGAATCTATGGGGCTTCCACTAGTACGACCTTATCTTGAAATCCTGAACGTCAATGAAACGGTGCGCAACCTTGACGAGGGTGTGAATTTTGCAGTTGTTGGAGCCACTGCACTTGACACTGACTTTCTTGACCCAATGGGACGTTATGATATATTTACAAACTTCTCTCTAAGAATTCAAGTGGACTGGTTCAAGGGAATGCTATCACCTTTATGCAATACATCTTCAGACTGCAGGAATCTCCTTTCAAGTTCTCTTATTGTTATGGGACCGATTGCAGGCAACGATTACAACTGTCCGTTTTTCGCAGGAGAGAGTTTGGAAATTGTTAAAACATATGTTCCGTTCGTGATAGAAGCAATGGCTTCAGCCATCAATGAGTTGATTCAGCATGGGGCATCGACACTTTTGGTACCAGGCAACGCTCCAATTGGTTGCATTCCTTGTTATCTTACCTTATATGAGGGTTCAGATGAGAGTGAATATGACCCTTTAACTGGCTGTCTTACCTGGTTAAACAAGTTTTCTGAGTATCACAATGAGCTACTTAAGACAAAGCTAAGTCAGATTCGAAGCCTTCATCCTCATGTCAACATCATTTATGGAGATCTTTACAATGCTGAGCTACAATTGTATCAGTCTCCAGAACATTTTGGATTTACCGAGAATACTTCCAGAGCATGCTGTGGAGGAGGAGGGACGTACAATTTCAACTTATCAGCACTATGTGGTCTTCCAGGATCACGTGCTTGTGCAAACCCTGCAAAGTCTATCAACTGGGACGGTCGGCACACTACTGAAGCAGCAAACCAGTGGATAGCCAAGGCCTTATTAAATGGAATTTACACCATTCCCCACATTAGTACCTCCTCTGTTTCACAACAGTGA

Protein Analysis

383

Amino Acids

42.22

Weight (kDa)

5.13

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 32 - 364 3.4e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 326
Acc65I GGTACC 1 cut(s) 673
AccB1I GGYRCC 1 cut(s) 673
AccII CGCG 1 cut(s) 74
AclWI GGATC 1 cut(s) 1009
AcsI RAATTY 3 cut(s) 346, 435, 1101
AcuI CTGAAG 3 cut(s) 471, 612, 1080
AcvI CACGTG 1 cut(s) 1007
AdeI CACNNNGTG 1 cut(s) 989
AfaI GTAC 6 cut(s) 71, 170, 285, 675, 965, 1126
AfiI CCNNNNNNNGG 5 cut(s) 160, 191, 337, 539, 758
AflII CTTAAG 1 cut(s) 809
AgsI TTSAA 5 cut(s) 299, 440, 454, 510, 973
AhlI ACTAGT 1 cut(s) 280
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 3 cut(s) 676, 770, 997
AleI CACNNNNGTG 1 cut(s) 1144
AluBI AGCT 3 cut(s) 805, 820, 886
AluI AGCT 3 cut(s) 805, 820, 886
Alw26I GTCTC 2 cut(s) 191, 906
AlwI GGATC 1 cut(s) 1009
AoxI GGCC 1 cut(s) 1086
ApeKI GCWGC 3 cut(s) 225, 228, 1064
ApoI RAATTY 3 cut(s) 346, 435, 1101
Asp718I GGTACC 1 cut(s) 673
AspLEI GCGC 2 cut(s) 225, 327
AspS9I GGNCC 2 cut(s) 164, 530
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 203, 459
AsuII TTCGAA 1 cut(s) 832
AvaII GGWCC 2 cut(s) 164, 530
BaeI ACNNNNGTAYC 4 cut(s) 878, 911, 1108, 1141
BanI GGYRCC 1 cut(s) 673
BbrPI CACGTG 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 986
BbvI GCAGC 3 cut(s) 212, 215, 1076
BccI CCATC 1 cut(s) 641
BciT130I CCWGG 3 cut(s) 678, 772, 999
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 191, 906
BcuI ACTAGT 1 cut(s) 280
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 226
BfrI CTTAAG 1 cut(s) 809
BglII AGATCT 1 cut(s) 868
BisI GCNGC 3 cut(s) 226, 229, 1065
BlpI GCTNAGC 1 cut(s) 882
BlsI GCNGC 3 cut(s) 227, 230, 1066
Bme1390I CCNGG 4 cut(s) 220, 678, 772, 999
Bme18I GGWCC 2 cut(s) 164, 530
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 164, 530
BmiI GGNNCC 4 cut(s) 165, 364, 531, 675
BmrFI CCNGG 4 cut(s) 220, 678, 772, 999
BmrI ACTGGG 1 cut(s) 1048
BmsI GCATC 1 cut(s) 668
BmuI ACTGGG 1 cut(s) 1048
BpiI GAAGAC 1 cut(s) 986
BpmI CTGGAG 1 cut(s) 888
Bpu1102I GCTNAGC 1 cut(s) 882
Bpu14I TTCGAA 1 cut(s) 832
BpuMI CCSGG 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 1083
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 191, 337, 539, 758
Bse1I ACTGG 5 cut(s) 130, 452, 763, 1043, 1072
Bse3DI GCAATG 2 cut(s) 255, 627
BseBI CCWGG 3 cut(s) 678, 772, 999
BseDI CCNNGG 1 cut(s) 1083
BseGI GGATG 2 cut(s) 63, 841
BseLI CCNNNNNNNGG 5 cut(s) 160, 191, 337, 539, 758
BseMI GCAATG 2 cut(s) 255, 627
BseMII CTCAG 2 cut(s) 780, 873
BseNI ACTGG 5 cut(s) 130, 452, 763, 1043, 1072
BseRI GAGGAG 3 cut(s) 966, 969, 1120
BseXI GCAGC 3 cut(s) 212, 215, 1076
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 74
Bsh1285I CGRYCG 2 cut(s) 238, 1048
BshFI GGCC 1 cut(s) 1088
BshNI GGYRCC 1 cut(s) 673
BsiEI CGRYCG 2 cut(s) 238, 1048
BsiSI CCGG 1 cut(s) 219
BsiWI CGTACG 1 cut(s) 69
BslFI GGGAC 4 cut(s) 414, 543, 973, 1055
BslI CCNNNNNNNGG 5 cut(s) 160, 191, 337, 539, 758
BsmAI GTCTC 2 cut(s) 191, 906
BsmFI GGGAC 4 cut(s) 414, 543, 973, 1055
BsmI GAATGC 2 cut(s) 465, 699
BsnI GGCC 1 cut(s) 1088
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 832
Bsp143I GATC 3 cut(s) 60, 868, 1001
Bsp1720I GCTNAGC 1 cut(s) 882
BspANI GGCC 1 cut(s) 1088
BspCNI CTCAG 2 cut(s) 781, 874
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 4 cut(s) 165, 364, 531, 675
BspMAI CTGCAG 1 cut(s) 497
BspPI GGATC 1 cut(s) 1009
BspT104I TTCGAA 1 cut(s) 832
BspT107I GGYRCC 1 cut(s) 673
BspTI CTTAAG 1 cut(s) 809
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 255, 627
BsrI ACTGG 5 cut(s) 130, 452, 763, 1043, 1072
BssECI CCNNGG 1 cut(s) 1083
BssMI GATC 3 cut(s) 60, 868, 1001
BssT1I CCWWGG 1 cut(s) 1083
Bst2UI CCWGG 3 cut(s) 678, 772, 999
Bst4CI ACNGT 6 cut(s) 55, 236, 322, 557, 1046, 1146
Bst6I CTCTTC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 809
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstBAI YACGTR 1 cut(s) 1007
BstBI TTCGAA 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 541, 943
BstDEI CTNAG 4 cut(s) 431, 789, 821, 882
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 63, 841
BstFNI CGCG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 225, 327
BstKTI GATC 3 cut(s) 63, 871, 1004
BstMAI GTCTC 2 cut(s) 191, 906
BstMBI GATC 3 cut(s) 60, 868, 1001
BstMCI CGRYCG 2 cut(s) 238, 1048
BstMWI GCNNNNNNNGC 1 cut(s) 1022
BstNI CCWGG 3 cut(s) 678, 772, 999
BstNSI RCATGY 1 cut(s) 945
BstSCI CCNGG 4 cut(s) 218, 676, 770, 997
BstSFI CTRYAG 1 cut(s) 493
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 212, 215, 1076
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BsuRI GGCC 1 cut(s) 1088
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 63, 841
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 366, 378, 1079
Cac8I GCNNGC 2 cut(s) 541, 943
CfoI GCGC 2 cut(s) 225, 327
Cfr13I GGNCC 2 cut(s) 164, 530
CsiI ACCWGGT 1 cut(s) 770
Csp6I GTAC 6 cut(s) 70, 169, 284, 674, 964, 1125
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 4 cut(s) 31, 653, 848, 942
CviQI GTAC 6 cut(s) 70, 169, 284, 674, 964, 1125
DdeI CTNAG 4 cut(s) 431, 789, 821, 882
DpnI GATC 3 cut(s) 62, 870, 1003
DpnII GATC 3 cut(s) 60, 868, 1001
DraIII CACNNNGTG 1 cut(s) 989
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 1083
Eco147I AGGCCT 1 cut(s) 1088
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 164, 530
Eco57I CTGAAG 3 cut(s) 471, 612, 1080
Eco72I CACGTG 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 3 cut(s) 676, 770, 997
EcoT14I CCWWGG 1 cut(s) 1083
ErhI CCWWGG 1 cut(s) 1083
FaeI CATG 4 cut(s) 34, 656, 851, 945
FaqI GGGAC 4 cut(s) 414, 543, 973, 1055
FatI CATG 4 cut(s) 30, 652, 847, 941
FauNDI CATATG 1 cut(s) 598
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 226, 229, 1065
FokI GGATG 2 cut(s) 50, 828
Fsp4HI GCNGC 3 cut(s) 226, 229, 1065
FspBI CTAG 1 cut(s) 281
FspI TGCGCA 1 cut(s) 326
GlaI GCGC 2 cut(s) 224, 326
GluI GCNGC 3 cut(s) 226, 229, 1065
GsuI CTGGAG 1 cut(s) 888
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 1088
HapII CCGG 1 cut(s) 219
HhaI GCGC 2 cut(s) 225, 327
Hin1II CATG 4 cut(s) 34, 656, 851, 945
Hin6I GCGC 2 cut(s) 223, 325
HinP1I GCGC 2 cut(s) 223, 325
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 5 cut(s) 110, 263, 499, 646, 829
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 203, 459
Hpy166II GTNNAC 2 cut(s) 445, 853
Hpy188I TCNGA 4 cut(s) 490, 733, 790, 828
Hpy188III TCNNGA 6 cut(s) 296, 304, 389, 610, 905, 936
Hpy8I GTNNAC 2 cut(s) 445, 853
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 53, 848
HpyCH4III ACNGT 6 cut(s) 55, 236, 322, 557, 1046, 1146
HpyCH4IV ACGT 5 cut(s) 36, 309, 403, 962, 1006
HpyCH4V TGCA 9 cut(s) 34, 353, 371, 477, 495, 539, 699, 1016, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 1022
HpyF3I CTNAG 4 cut(s) 431, 789, 821, 882
HpySE526I ACGT 5 cut(s) 36, 309, 403, 962, 1006
Hsp92II CATG 4 cut(s) 34, 656, 851, 945
HspAI GCGC 2 cut(s) 223, 325
KpnI GGTACC 1 cut(s) 677
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 60, 868, 1001
LmnI GCTCC 2 cut(s) 362, 691
Lsp1109I GCAGC 3 cut(s) 212, 215, 1076
LweI GCATC 1 cut(s) 668
MabI ACCWGGT 1 cut(s) 770
MaeI CTAG 1 cut(s) 281
MaeII ACGT 5 cut(s) 36, 309, 403, 962, 1006
MalI GATC 3 cut(s) 62, 870, 1003
MboI GATC 3 cut(s) 60, 868, 1001
MboII GAAGA 3 cut(s) 172, 477, 986
MfeI CAATTG 2 cut(s) 690, 890
MflI RGATCY 1 cut(s) 868
MluCI AATT 8 cut(s) 76, 346, 435, 585, 690, 890, 967, 1101
MmeI TCCRAC 1 cut(s) 340
MseI TTAA 6 cut(s) 242, 591, 755, 776, 810, 1094
MslI CAYNNNNRTG 3 cut(s) 472, 846, 1144
MspCI CTTAAG 1 cut(s) 809
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 4 cut(s) 220, 678, 772, 999
MunI CAATTG 2 cut(s) 690, 890
Mva1269I GAATGC 2 cut(s) 465, 699
MvaI CCWGG 3 cut(s) 678, 772, 999
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 1022
NciI CCSGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 598
NdeII GATC 3 cut(s) 60, 868, 1001
NlaIII CATG 4 cut(s) 34, 656, 851, 945
NlaIV GGNNCC 4 cut(s) 165, 364, 531, 675
NsbI TGCGCA 1 cut(s) 326
NspI RCATGY 1 cut(s) 945
NspV TTCGAA 1 cut(s) 832
OliI CACNNNNGTG 1 cut(s) 1144
PaeI GCATGC 1 cut(s) 945
PceI AGGCCT 1 cut(s) 1088
PctI GAATGC 2 cut(s) 465, 699
PfeI GAWTC 5 cut(s) 110, 263, 499, 646, 829
Pfl23II CGTACG 1 cut(s) 69
PfoI TCCNGGA 1 cut(s) 997
PkrI GCNGC 3 cut(s) 227, 230, 1066
PmaCI CACGTG 1 cut(s) 1007
PmlI CACGTG 1 cut(s) 1007
Ppu21I YACGTR 1 cut(s) 1007
Psp6I CCWGG 3 cut(s) 676, 770, 997
PspCI CACGTG 1 cut(s) 1007
PspGI CCWGG 3 cut(s) 676, 770, 997
PspLI CGTACG 1 cut(s) 69
PspN4I GGNNCC 4 cut(s) 165, 364, 531, 675
PspPI GGNCC 2 cut(s) 164, 530
PstI CTGCAG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 868
RsaI GTAC 6 cut(s) 71, 170, 285, 675, 965, 1126
RsaNI GTAC 6 cut(s) 70, 169, 284, 674, 964, 1125
RseI CAYNNNNRTG 3 cut(s) 472, 846, 1144
SaqAI TTAA 6 cut(s) 242, 591, 755, 776, 810, 1094
SatI GCNGC 3 cut(s) 226, 229, 1065
Sau3AI GATC 3 cut(s) 60, 868, 1001
Sau96I GGNCC 2 cut(s) 164, 530
ScrFI CCNGG 4 cut(s) 220, 678, 772, 999
SexAI ACCWGGT 1 cut(s) 770
SfaNI GCATC 1 cut(s) 668
SfcI CTRYAG 1 cut(s) 493
SfuI TTCGAA 1 cut(s) 832
SinI GGWCC 2 cut(s) 164, 530
SmiMI CAYNNNNRTG 3 cut(s) 472, 846, 1144
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
SpeI ACTAGT 1 cut(s) 280
SphI GCATGC 1 cut(s) 945
Sse9I AATT 8 cut(s) 76, 346, 435, 585, 690, 890, 967, 1101
SseBI AGGCCT 1 cut(s) 1088
SspMI CTAG 1 cut(s) 281
StuI AGGCCT 1 cut(s) 1088
StyD4I CCNGG 4 cut(s) 218, 676, 770, 997
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 6 cut(s) 55, 236, 322, 557, 1046, 1146
TaiI ACGT 5 cut(s) 39, 312, 406, 965, 1009
TaqI TCGA 2 cut(s) 662, 832
TaqII GACCGA 1 cut(s) 547
TasI AATT 8 cut(s) 76, 346, 435, 585, 690, 890, 967, 1101
TfiI GAWTC 5 cut(s) 110, 263, 499, 646, 829
Tru1I TTAA 6 cut(s) 242, 591, 755, 776, 810, 1094
Tru9I TTAA 6 cut(s) 242, 591, 755, 776, 810, 1094
TscAI CASTG 3 cut(s) 373, 385, 1079
TseI GCWGC 3 cut(s) 225, 228, 1064
TspDTI ATGAA 3 cut(s) 197, 330, 830
TspGWI ACGGA 3 cut(s) 156, 549, 594
TspRI CASTG 3 cut(s) 373, 385, 1079
Vha464I CTTAAG 1 cut(s) 809
VpaK11BI GGWCC 2 cut(s) 164, 530
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 3 cut(s) 346, 435, 1101
XceI RCATGY 1 cut(s) 945
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.