Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Reverse (-)

25695356 .. 25699568

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTTGGTATTTTGGGGCAAGTTTGACCATGAACGTCCTCCTCCTGCTCCTTACAGTTGTTATCATCCCGCATGCGAACTGTTGCTACACATCTATCATTGGGTTTGGGGATTCACTTGTTGATACTGGCAACATTTACATCGATGCCCGTTACCACCATAAGGGTCCGTACCATTTCTTCTTCCCTCCATATGGGGAGACCTACTTTCATCACCCCACCGGGCGCTGCTGCGACGGTCGTTTAATTATAGACCTCATTGCTGAATCTATGGGGCTTCCACTAGTACGACCTTATCTTGAAGTCCTGAACGTCAATGAAACGAAGCGCAACCTTGAAGAGGGTGTGAATTTTGCAGTTGTTGGAGCCACTGCACTTGACACTGACTTTCTTGACCCAATGGGACGTTATGATGTATTTACAAACTTCTCTCTAAGAATTCAAGTGGATTGGTTCAAAGGAATGCTATCATCTTTATGCAATACATCTTCAGACTGCAGGAATGTCCTTTCAAGTTCTCTCATTGTTATGGGACCGATTGGAGGCAACGATTATAACTGTCCGCTTTTCGCGGGAGAGAGTTTTGAAATTGTTGAAACATATGTTCCTTTCGTGATAGAAGCAATGGCTTCAGCCATCAATGAGTTGATTCAGCATGGGGCATCGACACTTTTGGTACCAGGCAACTTTCCAATTGGTTGCATTCCTGCTTATCTTACCTTATATGAGGGTTCAGATGAGAGTGAATATGACCCGTTAACTGACTATCTTACTTGGTTAAACAAGTTTTCTGAGTATCACAATGAGCTACTTAAGACAAAGTTAAGTCAGATTCGAAGCCTTCATCCTCATGTCAACATCATTTATGGAGATGTTTACAGTGCTGAGCTACAATTGTATCAGTCTCCAGAACAATTTGGATTTACAGAGAATACTTCCAGAGCATGCTGTGGAGGAGGAGGGACATACAATTACAACTTATCAGCACCATGTGGTCTTCCAGGAGCAAGTGCTTGTGCAAACCCTGCAAAGTCTATCAACTGGGACGGTCGGCACACTACTGAAGCAGCAAACCAGTGGATAGCCAAGGCCTTATTAAATGGAATTTACACCATTCCCCACATTAGTACCTCCTGTGTTTCACAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

384

Amino Acids

42.35

Weight (kDa)

4.93

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
Acc65I	GGTACC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	676
AccII	CGCG	1 cut(s)	572
AciI	CCGC	3 cut(s)	71, 563, 572
AcsI	RAATTY	3 cut(s)	349, 438, 1104
AcuI	CTGAAG	3 cut(s)	474, 615, 1083
AdeI	CACNNNGTG	1 cut(s)	992
AfaI	GTAC	4 cut(s)	173, 288, 678, 1129
AfiI	CCNNNNNNNGG	4 cut(s)	163, 194, 340, 542
AflII	CTTAAG	1 cut(s)	812
AgsI	TTSAA	7 cut(s)	302, 338, 443, 457, 513, 587, 596
AhlI	ACTAGT	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	679, 1000
AleI	CACNNNNGTG	1 cut(s)	1147
AluBI	AGCT	2 cut(s)	808, 889
AluI	AGCT	2 cut(s)	808, 889
Alw26I	GTCTC	2 cut(s)	194, 909
AoxI	GGCC	1 cut(s)	1089
ApeKI	GCWGC	3 cut(s)	228, 231, 1067
ApoI	RAATTY	3 cut(s)	349, 438, 1104
Asp718I	GGTACC	1 cut(s)	676
AspLEI	GCGC	2 cut(s)	228, 330
AspS9I	GGNCC	2 cut(s)	167, 533
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	835
AvaII	GGWCC	2 cut(s)	167, 533
BaeI	ACNNNNGTAYC	4 cut(s)	881, 914, 1111, 1144
BanI	GGYRCC	1 cut(s)	676
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BbsI	GAAGAC	1 cut(s)	989
BbvI	GCAGC	3 cut(s)	215, 218, 1079
BccI	CCATC	1 cut(s)	644
BciT130I	CCWGG	2 cut(s)	681, 1002
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	194, 909
BcuI	ACTAGT	1 cut(s)	283
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	496
BfoI	RGCGCY	1 cut(s)	229
BfrI	CTTAAG	1 cut(s)	812
BisI	GCNGC	3 cut(s)	229, 232, 1068
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	3 cut(s)	230, 233, 1069
Bme1390I	CCNGG	3 cut(s)	223, 681, 1002
Bme18I	GGWCC	2 cut(s)	167, 533
BmgT120I	GGNCC	2 cut(s)	167, 533
BmiI	GGNNCC	4 cut(s)	168, 367, 534, 678
BmrFI	CCNGG	3 cut(s)	223, 681, 1002
BmrI	ACTGGG	1 cut(s)	1051
BmsI	GCATC	2 cut(s)	136, 671
BmuI	ACTGGG	1 cut(s)	1051
BpiI	GAAGAC	1 cut(s)	989
BpmI	CTGGAG	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	885
Bpu14I	TTCGAA	1 cut(s)	835
BpuMI	CCSGG	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	1086
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 194, 340, 542
Bse1I	ACTGG	3 cut(s)	133, 1046, 1075
Bse3DI	GCAATG	2 cut(s)	258, 630
BseBI	CCWGG	2 cut(s)	681, 1002
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	2 cut(s)	66, 844
BseLI	CCNNNNNNNGG	4 cut(s)	163, 194, 340, 542
BseMI	GCAATG	2 cut(s)	258, 630
BseMII	CTCAG	2 cut(s)	783, 876
BseNI	ACTGG	3 cut(s)	133, 1046, 1075
BseRI	GAGGAG	3 cut(s)	32, 969, 972
BseXI	GCAGC	3 cut(s)	215, 218, 1079
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	572
Bsh1285I	CGRYCG	2 cut(s)	241, 1051
BshFI	GGCC	1 cut(s)	1091
BshNI	GGYRCC	1 cut(s)	676
BshVI	ATCGAT	1 cut(s)	144
BsiEI	CGRYCG	2 cut(s)	241, 1051
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	4 cut(s)	417, 546, 976, 1058
BslI	CCNNNNNNNGG	4 cut(s)	163, 194, 340, 542
BsmAI	GTCTC	2 cut(s)	194, 909
BsmFI	GGGAC	4 cut(s)	417, 546, 976, 1058
BsmI	GAATGC	2 cut(s)	468, 702
BsnI	GGCC	1 cut(s)	1091
Bso31I	GGTCTC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	835
Bsp1720I	GCTNAGC	1 cut(s)	885
BspACI	CCGC	3 cut(s)	71, 563, 572
BspANI	GGCC	1 cut(s)	1091
BspCNI	CTCAG	2 cut(s)	784, 877
BspDI	ATCGAT	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	4 cut(s)	168, 367, 534, 678
BspMAI	CTGCAG	1 cut(s)	500
BspT104I	TTCGAA	1 cut(s)	835
BspT107I	GGYRCC	1 cut(s)	676
BspTI	CTTAAG	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	258, 630
BsrI	ACTGG	3 cut(s)	133, 1046, 1075
BssECI	CCNNGG	1 cut(s)	1086
BssT1I	CCWWGG	1 cut(s)	1086
Bst2UI	CCWGG	2 cut(s)	681, 1002
Bst4CI	ACNGT	7 cut(s)	58, 83, 239, 560, 881, 1049, 1149
Bst6I	CTCTTC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstBI	TTCGAA	1 cut(s)	835
BstC8I	GCNNGC	2 cut(s)	75, 946
BstDEI	CTNAG	3 cut(s)	434, 792, 885
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	66, 844
BstFNI	CGCG	1 cut(s)	572
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	2 cut(s)	228, 330
BstMAI	GTCTC	2 cut(s)	194, 909
BstMCI	CGRYCG	2 cut(s)	241, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	1025
BstNI	CCWGG	2 cut(s)	681, 1002
BstNSI	RCATGY	2 cut(s)	77, 948
BstSCI	CCNGG	3 cut(s)	221, 679, 1000
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	3 cut(s)	215, 218, 1079
BstV2I	GAAGAC	1 cut(s)	989
Bsu15I	ATCGAT	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	1091
BsuTUI	ATCGAT	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	66, 844
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	4 cut(s)	369, 381, 886, 1082
Cac8I	GCNNGC	2 cut(s)	75, 946
CfoI	GCGC	2 cut(s)	228, 330
Cfr13I	GGNCC	2 cut(s)	167, 533
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	4 cut(s)	172, 287, 677, 1128
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	6 cut(s)	31, 74, 656, 851, 945, 990
CviQI	GTAC	4 cut(s)	172, 287, 677, 1128
DdeI	CTNAG	3 cut(s)	434, 792, 885
DraIII	CACNNNGTG	1 cut(s)	992
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	1086
Eco147I	AGGCCT	1 cut(s)	1091
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	167, 533
Eco57I	CTGAAG	3 cut(s)	474, 615, 1083
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	679, 1000
EcoT14I	CCWWGG	1 cut(s)	1086
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	6 cut(s)	34, 77, 659, 854, 948, 993
FaqI	GGGAC	4 cut(s)	417, 546, 976, 1058
FatI	CATG	6 cut(s)	30, 73, 655, 850, 944, 989
FauI	CCCGC	2 cut(s)	78, 565
FauNDI	CATATG	2 cut(s)	193, 601
Fnu4HI	GCNGC	3 cut(s)	229, 232, 1068
FokI	GGATG	2 cut(s)	53, 831
Fsp4HI	GCNGC	3 cut(s)	229, 232, 1068
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	2 cut(s)	227, 329
GluI	GCNGC	3 cut(s)	229, 232, 1068
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	1091
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	2 cut(s)	228, 330
Hin1II	CATG	6 cut(s)	34, 77, 659, 854, 948, 993
Hin6I	GCGC	2 cut(s)	226, 328
HinP1I	GCGC	2 cut(s)	226, 328
HincII	GTYRAC	2 cut(s)	759, 856
HindII	GTYRAC	2 cut(s)	759, 856
HinfI	GANTC	4 cut(s)	113, 266, 649, 832
HpaI	GTTAAC	1 cut(s)	759
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	759, 856, 877
Hpy188I	TCNGA	4 cut(s)	493, 736, 793, 831
Hpy188III	TCNNGA	6 cut(s)	299, 307, 392, 613, 908, 939
Hpy8I	GTNNAC	3 cut(s)	759, 856, 877
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	851
HpyCH4III	ACNGT	7 cut(s)	58, 83, 239, 560, 881, 1049, 1149
HpyCH4IV	ACGT	3 cut(s)	36, 312, 406
HpyCH4V	TGCA	7 cut(s)	356, 374, 480, 498, 702, 1019, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1025
HpyF3I	CTNAG	3 cut(s)	434, 792, 885
HpySE526I	ACGT	3 cut(s)	36, 312, 406
Hsp92II	CATG	6 cut(s)	34, 77, 659, 854, 948, 993
HspAI	GCGC	2 cut(s)	226, 328
KpnI	GGTACC	1 cut(s)	680
KspAI	GTTAAC	1 cut(s)	759
LmnI	GCTCC	3 cut(s)	54, 365, 1004
Lsp1109I	GCAGC	3 cut(s)	215, 218, 1079
LweI	GCATC	2 cut(s)	136, 671
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	3 cut(s)	36, 312, 406
MaeIII	GTNAC	1 cut(s)	152
MboII	GAAGA	5 cut(s)	172, 175, 350, 480, 989
MfeI	CAATTG	2 cut(s)	693, 893
MluCI	AATT	9 cut(s)	246, 349, 438, 588, 693, 893, 914, 970, 1104
MmeI	TCCRAC	1 cut(s)	343
MseI	TTAA	6 cut(s)	245, 758, 779, 813, 824, 1097
MslI	CAYNNNNRTG	4 cut(s)	475, 527, 849, 1147
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	3 cut(s)	223, 681, 1002
MunI	CAATTG	2 cut(s)	693, 893
Mva1269I	GAATGC	2 cut(s)	468, 702
MvaI	CCWGG	2 cut(s)	681, 1002
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	1025
NciI	CCSGG	1 cut(s)	223
NdeI	CATATG	2 cut(s)	193, 601
NlaIII	CATG	6 cut(s)	34, 77, 659, 854, 948, 993
NlaIV	GGNNCC	4 cut(s)	168, 367, 534, 678
NspI	RCATGY	2 cut(s)	77, 948
NspV	TTCGAA	1 cut(s)	835
OliI	CACNNNNGTG	1 cut(s)	1147
PaeI	GCATGC	2 cut(s)	77, 948
PceI	AGGCCT	1 cut(s)	1091
PctI	GAATGC	2 cut(s)	468, 702
PfeI	GAWTC	4 cut(s)	113, 266, 649, 832
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	3 cut(s)	230, 233, 1069
PsiI	TTATAA	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	679, 1000
PspGI	CCWGG	2 cut(s)	679, 1000
PspN4I	GGNNCC	4 cut(s)	168, 367, 534, 678
PspPI	GGNCC	2 cut(s)	167, 533
PsrI	GAACNNNNNNTAC	2 cut(s)	71, 103
PstI	CTGCAG	1 cut(s)	500
RsaI	GTAC	4 cut(s)	173, 288, 678, 1129
RsaNI	GTAC	4 cut(s)	172, 287, 677, 1128
RseI	CAYNNNNRTG	4 cut(s)	475, 527, 849, 1147
SaqAI	TTAA	6 cut(s)	245, 758, 779, 813, 824, 1097
SatI	GCNGC	3 cut(s)	229, 232, 1068
Sau96I	GGNCC	2 cut(s)	167, 533
ScrFI	CCNGG	3 cut(s)	223, 681, 1002
SfaNI	GCATC	2 cut(s)	136, 671
SfcI	CTRYAG	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	835
SinI	GGWCC	2 cut(s)	167, 533
SmiMI	CAYNNNNRTG	4 cut(s)	475, 527, 849, 1147
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
SpeI	ACTAGT	1 cut(s)	283
SphI	GCATGC	2 cut(s)	77, 948
Sse9I	AATT	9 cut(s)	246, 349, 438, 588, 693, 893, 914, 970, 1104
SseBI	AGGCCT	1 cut(s)	1091
SsiI	CCGC	3 cut(s)	71, 563, 572
SspMI	CTAG	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	1091
StyD4I	CCNGG	3 cut(s)	221, 679, 1000
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	7 cut(s)	58, 83, 239, 560, 881, 1049, 1149
TaiI	ACGT	3 cut(s)	39, 315, 409
TaqI	TCGA	3 cut(s)	144, 665, 835
TaqII	GACCGA	1 cut(s)	550
TasI	AATT	9 cut(s)	246, 349, 438, 588, 693, 893, 914, 970, 1104
TfiI	GAWTC	4 cut(s)	113, 266, 649, 832
Tru1I	TTAA	6 cut(s)	245, 758, 779, 813, 824, 1097
Tru9I	TTAA	6 cut(s)	245, 758, 779, 813, 824, 1097
TscAI	CASTG	4 cut(s)	376, 388, 886, 1082
TseI	GCWGC	3 cut(s)	228, 231, 1067
TspDTI	ATGAA	4 cut(s)	47, 200, 333, 833
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	4 cut(s)	376, 388, 886, 1082
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	2 cut(s)	167, 533
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	3 cut(s)	349, 438, 1104
XceI	RCATGY	2 cut(s)	77, 948
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.