Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Forward (+)

5638258 .. 5639155

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCAAGTTTCCGGCTATTTTCAACTTCGGCGACTCAAACTCCAACACCGGTGGCTTCTCTGCAGTTTTCGGCCAGGCGGGTCCGCCTCATGGCAGTCTTATTTCCACTGCCCGGCCGGTCGTTGTTGCAATGGCCCCCTTGTCATCGACTTCATAGAGAGGAGAAGGTGCACCACGACTTTGATGCAGAAACCAGGCATGGCAGCAGCTTCGAACTCTTTTGCGGGTATGTTTTCTCTCTGTGCATTGCTTTATGGTTTATGGTTTTGTGTTTTGATCACGGTAACTTGCTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.2

Weight (kDa)

9.45

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	78, 84, 224
AcoI	YGGCCR	2 cut(s)	71, 114
AfiI	CCNNNNNNNGG	2 cut(s)	90, 112
AgeI	ACCGGT	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	73, 193
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw21I	GWGCWC	1 cut(s)	173
Alw44I	GTGCAC	1 cut(s)	169
AoxI	GGCC	3 cut(s)	71, 114, 133
ApaLI	GTGCAC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	203, 206
AsiGI	ACCGGT	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	81, 134
AsuC2I	CCSGG	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	215, 218
BcgI	CGANNNNNNTGC	4 cut(s)	166, 192, 200, 226
BciT130I	CCWGG	2 cut(s)	75, 195
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	2 cut(s)	204, 207
BlsI	GCNGC	2 cut(s)	205, 208
Bme1390I	CCNGG	3 cut(s)	75, 113, 195
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	81, 134
BmiI	GGNNCC	2 cut(s)	82, 136
BmrFI	CCNGG	3 cut(s)	75, 113, 195
BmsI	GCATC	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 112
Bse118I	RCCGGY	2 cut(s)	48, 116
Bse3DI	GCAATG	2 cut(s)	136, 245
BseBI	CCWGG	2 cut(s)	75, 195
BseLI	CCNNNNNNNGG	2 cut(s)	90, 112
BseMI	GCAATG	2 cut(s)	136, 245
BseRI	GAGGAG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	173
BseX3I	CGGCCG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	215, 218
Bsh1285I	CGRYCG	2 cut(s)	117, 121
BshFI	GGCC	3 cut(s)	73, 116, 135
BshTI	ACCGGT	1 cut(s)	48
BsiEI	CGRYCG	2 cut(s)	117, 121
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	4 cut(s)	12, 49, 113, 117
BslI	CCNNNNNNNGG	2 cut(s)	90, 112
BsnI	GGCC	3 cut(s)	73, 116, 135
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	3 cut(s)	78, 84, 224
BspANI	GGCC	3 cut(s)	73, 116, 135
BspLI	GGNNCC	2 cut(s)	82, 136
BspMAI	CTGCAG	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	136, 245
BsrFI	RCCGGY	2 cut(s)	48, 116
BssAI	RCCGGY	2 cut(s)	48, 116
BssMI	GATC	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	75, 195
Bst4CI	ACNGT	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	212
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	2 cut(s)	117, 121
BstNI	CCWGG	2 cut(s)	75, 195
BstSCI	CCNGG	3 cut(s)	73, 111, 193
BstSFI	CTRYAG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	215, 218
BstZI	CGGCCG	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	73, 116, 135
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
Cfr10I	RCCGGY	2 cut(s)	48, 116
Cfr13I	GGNCC	2 cut(s)	81, 134
CspAI	ACCGGT	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	32, 67
CviAII	CATG	3 cut(s)	90, 199, 297
CviJI	RGCY	6 cut(s)	15, 55, 73, 116, 135, 209
CviKI_1	RGCY	6 cut(s)	15, 55, 73, 116, 135, 209
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	71, 114
EagI	CGGCCG	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	73, 193
FaeI	CATG	3 cut(s)	93, 202, 300
FaiI	YATR	7 cut(s)	91, 155, 200, 230, 255, 262, 298
FatI	CATG	3 cut(s)	89, 198, 296
FauI	CCCGC	2 cut(s)	71, 217
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	204, 207
Fsp4HI	GCNGC	2 cut(s)	204, 207
GluI	GCNGC	2 cut(s)	204, 207
HaeIII	GGCC	3 cut(s)	73, 116, 135
HapII	CCGG	4 cut(s)	12, 49, 113, 117
Hin1II	CATG	3 cut(s)	93, 202, 300
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	4 cut(s)	12, 49, 113, 117
Hpy166II	GTNNAC	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	7 cut(s)	4, 63, 129, 171, 187, 245, 296
Hsp92II	CATG	3 cut(s)	93, 202, 300
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	8 cut(s)	25, 60, 62, 87, 126, 130, 180, 207
Lsp1109I	GCAGC	2 cut(s)	215, 218
LweI	GCATC	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	97, 153
MspI	CCGG	4 cut(s)	12, 49, 113, 117
MspR9I	CCNGG	3 cut(s)	75, 113, 195
MvaI	CCWGG	2 cut(s)	75, 195
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	93, 202, 300
NlaIV	GGNNCC	2 cut(s)	82, 136
NspV	TTCGAA	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	205, 208
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	73, 193
PspGI	CCWGG	2 cut(s)	73, 193
PspN4I	GGNNCC	2 cut(s)	82, 136
PspPI	GGNCC	2 cut(s)	81, 134
PstI	CTGCAG	1 cut(s)	65
SatI	GCNGC	2 cut(s)	204, 207
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	81, 134
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	3 cut(s)	75, 113, 195
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	2 cut(s)	170, 211
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	212
SgrAI	CRCCGGYG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	81
SsiI	CCGC	3 cut(s)	78, 84, 224
StyD4I	CCNGG	3 cut(s)	73, 111, 193
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	147, 212
TscAI	CASTG	1 cut(s)	113
TseI	GCWGC	2 cut(s)	203, 206
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.