Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001486

Physical Location & Seq

Genomic Coordinates Forward (+)

2801100 .. 2803313

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGGTGGTCTTTTCAGGCATATTTGATGAACCTCATCCTCATATCAGTTATCATCAACCCTCTTGTGCTTGGTTGCTACAATTCAATCATCGGCTTTGGAGATTCAATTACTGATACAGGCAACTTATACAACAGCGATCCTAACAGATCTCTCAACTTCTTCCACCCGCCATATGGAGAGACCTACTTTCATCATCCCACGGGACGATGCTCGGATGGTCGTTTGGTCATAGACTTCATTGCTGAGTTTCTGGGACTTCCACTAGTACCACCTTATCTTGAAAGCCAGAGCAGTAATCAAAGTGTCCAGAACTTTGAAGCGGGTGTGAATTTTGCAGTAGCAGGAGCCACGGCGTTAGATGCTGCCTTTCTTGAAGAAATGGGGGATTCTGTTTCATGTACCAACGACTCTCTAAGCATTCAACTGGAGTGGTTCAAACAAATGCTGCCATCTCTATGCAACACATCTTCAGACTGCAACAAAGTCCTTTCAACTTCTCTAATTCTAATGGGAGAGATTGGAGGCAACGATTACAACGATGCATTGCTTGCAGGAAAAAGTATAGAAAAGGTTCAAGCGTATGTACCATTAGTGATAGAAACAATTGCTTCAACCATCAATGAGTTAATCGAGCTCGGGGCGGCAACACTTTTGGTACCAGGCAACTTTCCAATTGGTTGCCTTCCTGCTTATCTAACAAAATATGAGAGTTCAGATAAGAACCAATATGACCCTTCAACTGGCTGTCTAAACTGGTTAAACAAGTTTTCTGGGTATCACAATGATCAGCTTCAGATAGCACTAAGTCGGATTCGAAGGCTTCATCCTCAGGTCACTATCATTTATGCAGATTATTACAATGCCATGCTGCAATTATATCAGTCTCCGGACCAATTTGGATTTATTGGGGAGACTAGCAAAGCATGCTGTGGAGGAGGAGGGCCATACAACTACAACGCATCCGCACTATGCGGGGATGCAGGGGCAAGTGCTTGTGAGAACCCTGCACAGTTTATCAGCTGGGATGGCCTGCACTCCACTGAAGCAGCACACAGGTGGATAACCAAGGCTATATTACAAGGAAATTACACCGTTCCACGCGTTTCCACTTTGTGTGATTCACCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

378

Amino Acids

41.07

Weight (kDa)

4.58

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28570 AT1G28570 AT1G28570 AT1G28580 AT1G28580 AT1G28590 AT1G28600 AT1G28600 AT1G28610 AT1G28610 AT1G28640 AT1G28650 AT1G28660 AT1G28660 AT1G28670 AT1G31550 AT1G31550 AT2G27360
fragaria_vesca	FvH4_3g24320 FvH4_3g24320
malus_domestica	MD05G1303900.v1.1 MD05G1304000.v1.1 MD10G1283200.v1.1 MD10G1283400.v1.1
prunus_persica	Prupe.4G058600_v2.0.a1 Prupe.4G058700_v2.0.a1 Prupe.4G058800_v2.0.a1 Prupe.4G058900_v2.0.a1
pyrus_communis	pycom05g28080 pycom05g28100 pycom05g28110 pycom05g28120 pycom05g28130 pycom05g28140 pycom10g23610 pycom10g23620 pycom10g23630 pycom10g23640 pycom16g08500
rosa_chinensis	RchiOBHm_Chr5g0010201 RchiOBHm_Chr5g0010241
rosa_laevigata	RLG00000031730
rosa_multiflora	Rmu_co8023010.1_g000001 Rmu_co8377757.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066020
rosa_rugosa	Rorug04G0449600
rosa_samantha	Rh5AG080600 Rh5BG075200 Rh5CG088900 Rh5DG076100
rosa_wichuraiana	Rw5G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	658
AccII	CGCG	1 cut(s)	1104
AccIII	TCCGGA	1 cut(s)	889
AciI	CCGC	5 cut(s)	170, 323, 644, 966, 975
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	3 cut(s)	456, 779, 1065
AdeI	CACNNNGTG	1 cut(s)	1116
AfaI	GTAC	4 cut(s)	270, 403, 588, 660
AfiI	CCNNNNNNNGG	2 cut(s)	176, 743
AflIII	ACRYGT	1 cut(s)	1102
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	661
AleI	CACNNNNGTG	2 cut(s)	1057, 1129
AluBI	AGCT	3 cut(s)	637, 793, 1023
AluI	AGCT	3 cut(s)	637, 793, 1023
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	3 cut(s)	176, 891, 908
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	638
Aor13HI	TCCGGA	1 cut(s)	889
AoxI	GGCC	2 cut(s)	944, 1030
ApeKI	GCWGC	4 cut(s)	365, 448, 871, 1049
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	1 cut(s)	573
Asp718I	GGTACC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	892, 944
AsuHPI	GGTGA	1 cut(s)	1116
AsuII	TTCGAA	1 cut(s)	817
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	892
AxyI	CCTNAGG	1 cut(s)	831
BanI	GGYRCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	4 cut(s)	352, 435, 858, 1061
BccI	CCATC	4 cut(s)	212, 460, 626, 1022
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	663
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	3 cut(s)	176, 891, 908
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	266, 918
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	5 cut(s)	366, 449, 645, 872, 1050
BlsI	GCNGC	5 cut(s)	367, 450, 646, 873, 1051
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	1 cut(s)	892
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	892, 944
BmiI	GGNNCC	2 cut(s)	349, 660
BmrFI	CCNGG	1 cut(s)	663
BmsI	GCATC	5 cut(s)	200, 352, 532, 970, 971
BpmI	CTGGAG	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	817
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	201, 351, 1068
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 743
Bse1I	ACTGG	4 cut(s)	432, 748, 761, 1127
Bse21I	CCTNAGG	1 cut(s)	831
Bse3DI	GCAATG	2 cut(s)	240, 545
BseAI	TCCGGA	1 cut(s)	889
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	3 cut(s)	201, 351, 1068
BseGI	GGATG	7 cut(s)	36, 196, 223, 826, 962, 985, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	176, 743
BseMI	GCAATG	2 cut(s)	240, 545
BseMII	CTCAG	2 cut(s)	237, 845
BseNI	ACTGG	4 cut(s)	432, 748, 761, 1127
BseRI	GAGGAG	2 cut(s)	951, 954
BseXI	GCAGC	4 cut(s)	352, 435, 858, 1061
BseYI	CCCAGC	1 cut(s)	1023
BsgI	GTGCAG	2 cut(s)	993, 1019
Bsh1236I	CGCG	1 cut(s)	1104
BshFI	GGCC	2 cut(s)	946, 1032
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	1 cut(s)	890
BslFI	GGGAC	2 cut(s)	219, 270
BslI	CCNNNNNNNGG	2 cut(s)	176, 743
BsmAI	GTCTC	3 cut(s)	176, 891, 908
BsmFI	GGGAC	2 cut(s)	219, 270
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	946, 1032
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	638
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp13I	TCCGGA	1 cut(s)	889
Bsp143I	GATC	3 cut(s)	139, 149, 787
BspACI	CCGC	5 cut(s)	170, 323, 644, 966, 975
BspANI	GGCC	2 cut(s)	946, 1032
BspCNI	CTCAG	2 cut(s)	238, 844
BspEI	TCCGGA	1 cut(s)	889
BspFNI	CGCG	1 cut(s)	1104
BspLI	GGNNCC	2 cut(s)	349, 660
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	817
BspT107I	GGYRCC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	240, 545
BsrI	ACTGG	4 cut(s)	432, 748, 761, 1127
BssECI	CCNNGG	3 cut(s)	201, 351, 1068
BssMI	GATC	3 cut(s)	139, 149, 787
BssT1I	CCWWGG	1 cut(s)	1068
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	1014, 1096
BstAPI	GCANNNNNTGC	2 cut(s)	551, 927
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	3 cut(s)	552, 928, 1034
BstDEI	CTNAG	4 cut(s)	246, 416, 806, 831
BstDSI	CCRYGG	2 cut(s)	201, 351
BstF5I	GGATG	7 cut(s)	36, 196, 223, 826, 962, 985, 1033
BstFNI	CGCG	1 cut(s)	1104
BstKTI	GATC	3 cut(s)	142, 152, 790
BstMAI	GTCTC	3 cut(s)	176, 891, 908
BstMBI	GATC	3 cut(s)	139, 149, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 551, 927, 1029
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	661
BstUI	CGCG	1 cut(s)	1104
BstV1I	GCAGC	4 cut(s)	352, 435, 858, 1061
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
Bsu36I	CCTNAGG	1 cut(s)	831
BsuRI	GGCC	2 cut(s)	946, 1032
BtgI	CCRYGG	2 cut(s)	201, 351
BtsCI	GGATG	7 cut(s)	36, 196, 223, 826, 962, 985, 1033
BtsIMutI	CAGTG	2 cut(s)	1041, 1134
Cac8I	GCNNGC	3 cut(s)	552, 928, 1034
Cfr13I	GGNCC	2 cut(s)	892, 944
Csp6I	GTAC	4 cut(s)	269, 402, 587, 659
CspCI	CAANNNNNGTGG	2 cut(s)	413, 448
CviAII	CATG	3 cut(s)	399, 868, 927
CviQI	GTAC	4 cut(s)	269, 402, 587, 659
DdeI	CTNAG	4 cut(s)	246, 416, 806, 831
DpnI	GATC	3 cut(s)	141, 151, 789
DpnII	GATC	3 cut(s)	139, 149, 787
DraIII	CACNNNGTG	1 cut(s)	1116
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	1068
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	892
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	3 cut(s)	456, 779, 1065
Eco81I	CCTNAGG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	1068
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	1068
FaeI	CATG	3 cut(s)	402, 871, 930
FaqI	GGGAC	2 cut(s)	219, 270
FatI	CATG	3 cut(s)	398, 867, 926
FauI	CCCGC	3 cut(s)	177, 316, 968
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	5 cut(s)	366, 449, 645, 872, 1050
FokI	GGATG	7 cut(s)	23, 183, 230, 813, 949, 992, 1040
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	5 cut(s)	366, 449, 645, 872, 1050
FspBI	CTAG	2 cut(s)	266, 918
GluI	GCNGC	5 cut(s)	366, 449, 645, 872, 1050
GsaI	CCCAGC	1 cut(s)	1027
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	946, 1032
HapII	CCGG	1 cut(s)	890
Hin1II	CATG	3 cut(s)	402, 871, 930
HinfI	GANTC	5 cut(s)	104, 389, 410, 814, 1121
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	1 cut(s)	1116
Hpy188I	TCNGA	5 cut(s)	217, 475, 718, 798, 813
Hpy188III	TCNNGA	4 cut(s)	281, 310, 374, 890
HpyAV	CCTTC	3 cut(s)	695, 747, 813
HpyCH4III	ACNGT	2 cut(s)	1014, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 551, 927, 1029
HpyF3I	CTNAG	4 cut(s)	246, 416, 806, 831
Hsp92II	CATG	3 cut(s)	402, 871, 930
Kpn2I	TCCGGA	1 cut(s)	889
KpnI	GGTACC	1 cut(s)	662
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	139, 149, 787
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	4 cut(s)	352, 435, 858, 1061
LweI	GCATC	5 cut(s)	200, 352, 532, 970, 971
MaeI	CTAG	2 cut(s)	266, 918
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	3 cut(s)	141, 151, 789
MboI	GATC	3 cut(s)	139, 149, 787
MboII	GAAGA	3 cut(s)	154, 389, 462
MfeI	CAATTG	2 cut(s)	606, 675
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	9 cut(s)	82, 108, 331, 504, 606, 675, 875, 896, 1087
MluI	ACGCGT	1 cut(s)	1102
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	791
MnlI	CCTC	8 cut(s)	44, 50, 72, 518, 840, 929, 932, 935
Mph1103I	ATGCAT	1 cut(s)	547
MroI	TCCGGA	1 cut(s)	889
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	2 cut(s)	629, 761
MslI	CAYNNNNRTG	3 cut(s)	457, 1057, 1129
MspA1I	CMGCKG	1 cut(s)	1023
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	1 cut(s)	663
MunI	CAATTG	2 cut(s)	606, 675
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	4 cut(s)	362, 551, 927, 1029
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	3 cut(s)	139, 149, 787
NlaIII	CATG	3 cut(s)	402, 871, 930
NlaIV	GGNNCC	2 cut(s)	349, 660
NmuCI	GTSAC	1 cut(s)	835
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	930
NspV	TTCGAA	1 cut(s)	817
OliI	CACNNNNGTG	2 cut(s)	1057, 1129
PaeI	GCATGC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PctI	GAATGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	4 cut(s)	104, 389, 814, 1121
PkrI	GCNGC	5 cut(s)	367, 450, 646, 873, 1051
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	1023
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	349, 660
PspPI	GGNCC	2 cut(s)	892, 944
PsuI	RGATCY	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	1023
RsaI	GTAC	4 cut(s)	270, 403, 588, 660
RsaNI	GTAC	4 cut(s)	269, 402, 587, 659
RseI	CAYNNNNRTG	3 cut(s)	457, 1057, 1129
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	629, 761
SatI	GCNGC	5 cut(s)	366, 449, 645, 872, 1050
Sau3AI	GATC	3 cut(s)	139, 149, 787
Sau96I	GGNCC	2 cut(s)	892, 944
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	1 cut(s)	639
SetI	ASST	9 cut(s)	36, 188, 277, 576, 639, 795, 837, 1025, 1061
SfaNI	GCATC	5 cut(s)	200, 352, 532, 970, 971
SfuI	TTCGAA	1 cut(s)	817
SinI	GGWCC	1 cut(s)	892
SmiMI	CAYNNNNRTG	3 cut(s)	457, 1057, 1129
SpeI	ACTAGT	1 cut(s)	265
SphI	GCATGC	1 cut(s)	930
Sse9I	AATT	9 cut(s)	82, 108, 331, 504, 606, 675, 875, 896, 1087
SsiI	CCGC	5 cut(s)	170, 323, 644, 966, 975
SspMI	CTAG	2 cut(s)	266, 918
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	661
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	2 cut(s)	1014, 1096
TaqI	TCGA	2 cut(s)	633, 817
TasI	AATT	9 cut(s)	82, 108, 331, 504, 606, 675, 875, 896, 1087
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	4 cut(s)	104, 389, 814, 1121
Tru1I	TTAA	2 cut(s)	629, 761
Tru9I	TTAA	2 cut(s)	629, 761
TscAI	CASTG	2 cut(s)	1048, 1134
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	4 cut(s)	365, 448, 871, 1049
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	5 cut(s)	44, 182, 229, 387, 815
TspRI	CASTG	2 cut(s)	1048, 1134
VpaK11BI	GGWCC	1 cut(s)	892
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	2 cut(s)	266, 918
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.