Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

20905914 .. 20907414

Gene Structure 1501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCTCGTTCTCTTGTCTTCTTCTTCCTCTTTCTTGTCTTGGTCGTCCCTTGTCTCTCCCATGGAACCGGAGGAGACCACGACGACGATGAGGCTTCGCACGTTAAGAGTTCCGATCTCAAATCCAAATCCTTAATCTCCGTCAAGATCGCATGTCTTGTCATCATCTTTGTCCTCACGTTCATAAGCGGTGTATCTCCTTATTTCTTGAAATGGAGCCAAGGGTTTTTGGTTCTTGGTACACAATTCGCCGGAGGCGTGTTTCTTGCAACCGCCTTGATGCATTTCTTGTCGGACGCTGATGAGACGTTTCGTGGTTTGTTGACGGCGGAAGGAGAGTCGGAGCCATCTCCGGCTTACCCATTTGCTTATATGTTGGCTTGTGCTGGTTTTATGTTGACCATGCTTGCTGATTCTGTCATCGCTCATATCTACTCAAAGACCCAAAACGATTTGGAGCTTCAAGGAGAAGACAAATCGAATCAGAGGTCAGCAACAACTGAAACTTCGATTGGAGATAGCATTCTATTGATCGTAGCTCTCTGTTTTCACTCTGTCTTCGAAGGCATAGCTATTGGTATTTCAGAGACTAAATCAGATGCTTGGAGAGCTCTCTGGACAATAACACTCCATAAGATATTTGCAGCGATTGCAATGGGGATAGCTCTTCTCCGTATGATCCCTGACCGTCCTTTATTCTCCTCAATCACTTATTCTTTCGCATTCGCCATCTCGAGCCCAATTGGTGTTGCCATCGGGATAGTCATCGATGCAACGACTCAAGGGTCCATCGCGGATTGGATATTCGCATTGTCGATGAGCTTGGCGTGTGGGGTATTTGTGTATGTATCTGTGAACCATTTGTTGGCAAAAGGGTATCGACCAAACAAGAAAGTTCATGTTGATGAGCCTCGTTATAAGTTTTTGGCTGTGTTGTTTGGAGTTGTTGTCATTGCCATTGTTATGATATGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

326

Amino Acids

35.46

Weight (kDa)

5.67

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	47 - 321	4.7e-50	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
AasI	GACNNNNNNGTC	1 cut(s)	784
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccII	CGCG	1 cut(s)	794
AciI	CCGC	4 cut(s)	189, 273, 329, 794
AclWI	GGATC	1 cut(s)	673
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	865
AgsI	TTSAA	2 cut(s)	211, 464
AjuI	GAANNNNNNNTTGG	4 cut(s)	495, 527, 848, 880
AluBI	AGCT	6 cut(s)	460, 539, 572, 611, 665, 822
AluI	AGCT	6 cut(s)	460, 539, 572, 611, 665, 822
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	5 cut(s)	9, 59, 69, 299, 581
AlwI	GGATC	1 cut(s)	673
Ama87I	CYCGRG	1 cut(s)	733
ApeKI	GCWGC	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AspS9I	GGNCC	1 cut(s)	786
AsuII	TTCGAA	1 cut(s)	561
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	786
BanII	GRGCYC	2 cut(s)	613, 740
BbsI	GAAGAC	3 cut(s)	10, 477, 550
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	4 cut(s)	355, 737, 761, 797
BceAI	ACGGC	1 cut(s)	342
BcoDI	GTCTC	5 cut(s)	9, 59, 69, 299, 581
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
Bme18I	GGWCC	1 cut(s)	786
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	4 cut(s)	67, 218, 345, 787
BmsI	GCATC	3 cut(s)	270, 589, 760
BpiI	GAAGAC	3 cut(s)	10, 477, 550
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	765
Bsa29I	ATCGAT	1 cut(s)	768
BsaBI	GATNNNNATC	1 cut(s)	764
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	61, 220
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	1 cut(s)	865
Bse3DI	GCAATG	2 cut(s)	660, 951
Bse8I	GATNNNNATC	1 cut(s)	764
BseCI	ATCGAT	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	61, 220
BseJI	GATNNNNATC	1 cut(s)	764
BseLI	CCNNNNNNNGG	1 cut(s)	865
BseMI	GCAATG	2 cut(s)	660, 951
BseRI	GAGGAG	2 cut(s)	87, 691
BseXI	GCAGC	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	794
BshVI	ATCGAT	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	3 cut(s)	69, 252, 353
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	865
BsmAI	GTCTC	5 cut(s)	9, 59, 69, 299, 581
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	2 cut(s)	522, 722
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	733
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	613, 740
Bsp143I	GATC	4 cut(s)	115, 147, 531, 678
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	4 cut(s)	189, 273, 329, 794
BspDI	ATCGAT	1 cut(s)	768
BspFNI	CGCG	1 cut(s)	794
BspLI	GGNNCC	4 cut(s)	67, 218, 345, 787
BspPI	GGATC	1 cut(s)	673
BspQI	GCTCTTC	1 cut(s)	672
BspT104I	TTCGAA	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	660, 951
BssECI	CCNNGG	2 cut(s)	61, 220
BssMI	GATC	4 cut(s)	115, 147, 531, 678
BssT1I	CCWWGG	2 cut(s)	61, 220
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	672
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	794
BstKTI	GATC	4 cut(s)	118, 150, 534, 681
BstMAI	GTCTC	5 cut(s)	9, 59, 69, 299, 581
BstMBI	GATC	4 cut(s)	115, 147, 531, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 650
BstNSI	RCATGY	1 cut(s)	156
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	1 cut(s)	656
BstV2I	GAAGAC	3 cut(s)	10, 477, 550
Bsu15I	ATCGAT	1 cut(s)	768
BsuTUI	ATCGAT	1 cut(s)	768
BtgI	CCRYGG	1 cut(s)	61
BtgZI	GCGATG	2 cut(s)	406, 775
Cac8I	GCNNGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	786
ClaI	ATCGAT	1 cut(s)	768
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	4 cut(s)	62, 153, 403, 899
CviQI	GTAC	1 cut(s)	240
DpnI	GATC	4 cut(s)	117, 149, 533, 680
DpnII	GATC	4 cut(s)	115, 147, 531, 678
DrdI	GACNNNNNNGTC	1 cut(s)	784
DseDI	GACNNNNNNGTC	1 cut(s)	784
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	611
Eco130I	CCWWGG	2 cut(s)	61, 220
Eco24I	GRGCYC	2 cut(s)	613, 740
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	611
Eco88I	CYCGRG	1 cut(s)	733
EcoICRI	GAGCTC	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	61, 220
EcoT22I	ATGCAT	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	613, 740
ErhI	CCWWGG	2 cut(s)	61, 220
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	4 cut(s)	65, 156, 406, 902
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	4 cut(s)	61, 152, 402, 898
Fnu4HI	GCNGC	1 cut(s)	645
FriOI	GRGCYC	2 cut(s)	613, 740
Fsp4HI	GCNGC	1 cut(s)	645
GluI	GCNGC	1 cut(s)	645
HapII	CCGG	3 cut(s)	69, 252, 353
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	65, 156, 406, 902
HincII	GTYRAC	2 cut(s)	324, 399
HindII	GTYRAC	2 cut(s)	324, 399
HinfI	GANTC	4 cut(s)	338, 413, 481, 778
HpaII	CCGG	3 cut(s)	69, 252, 353
Hpy166II	GTNNAC	4 cut(s)	242, 324, 399, 856
Hpy188I	TCNGA	6 cut(s)	115, 295, 343, 486, 586, 598
Hpy188III	TCNNGA	5 cut(s)	145, 208, 616, 733, 757
Hpy8I	GTNNAC	4 cut(s)	242, 324, 399, 856
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	2 cut(s)	326, 557
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	3 cut(s)	102, 179, 308
HpyCH4V	TGCA	5 cut(s)	269, 283, 644, 653, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 650
HpySE526I	ACGT	3 cut(s)	102, 179, 308
Hsp92II	CATG	4 cut(s)	65, 156, 406, 902
Kzo9I	GATC	4 cut(s)	115, 147, 531, 678
LguI	GCTCTTC	1 cut(s)	672
LmnI	GCTCC	3 cut(s)	216, 343, 457
LpnPI	CCDG	6 cut(s)	82, 265, 366, 372, 601, 696
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	3 cut(s)	270, 589, 760
MaeII	ACGT	3 cut(s)	102, 179, 308
MalI	GATC	4 cut(s)	117, 149, 533, 680
MboI	GATC	4 cut(s)	115, 147, 531, 678
MboII	GAAGA	6 cut(s)	10, 13, 16, 482, 550, 659
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	2 cut(s)	613, 740
MluCI	AATT	2 cut(s)	245, 741
MlyI	GAGTC	2 cut(s)	347, 772
MmeI	TCCRAC	2 cut(s)	273, 321
MnlI	CCTC	8 cut(s)	38, 65, 85, 185, 248, 480, 712, 921
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	2 cut(s)	105, 134
MslI	CAYNNNNRTG	2 cut(s)	903, 962
MspI	CCGG	3 cut(s)	69, 252, 353
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	522, 722
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	2 cut(s)	608, 650
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	115, 147, 531, 678
NlaIII	CATG	4 cut(s)	65, 156, 406, 902
NlaIV	GGNNCC	4 cut(s)	67, 218, 345, 787
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	156
NspV	TTCGAA	1 cut(s)	561
PaeR7I	CTCGAG	1 cut(s)	733
PciSI	GCTCTTC	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	2 cut(s)	522, 722
PfeI	GAWTC	2 cut(s)	413, 481
PflMI	CCANNNNNTGG	1 cut(s)	865
PkrI	GCNGC	1 cut(s)	646
PleI	GAGTC	2 cut(s)	346, 772
PpsI	GAGTC	2 cut(s)	346, 772
PsiI	TTATAA	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	613
PspN4I	GGNNCC	4 cut(s)	67, 218, 345, 787
PspPI	GGNCC	1 cut(s)	786
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	2 cut(s)	903, 962
SacI	GAGCTC	1 cut(s)	613
SapI	GCTCTTC	1 cut(s)	672
SaqAI	TTAA	2 cut(s)	105, 134
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	4 cut(s)	115, 147, 531, 678
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	2 cut(s)	347, 772
SduI	GDGCHC	2 cut(s)	613, 740
SfaNI	GCATC	3 cut(s)	270, 589, 760
Sfr274I	CTCGAG	1 cut(s)	733
SfuI	TTCGAA	1 cut(s)	561
SinI	GGWCC	1 cut(s)	786
SlaI	CTCGAG	1 cut(s)	733
SmiMI	CAYNNNNRTG	2 cut(s)	903, 962
SmlI	CTYRAG	2 cut(s)	733, 780
SmoI	CTYRAG	2 cut(s)	733, 780
Sse9I	AATT	2 cut(s)	245, 741
SsiI	CCGC	4 cut(s)	189, 273, 329, 794
SstI	GAGCTC	1 cut(s)	613
StyI	CCWWGG	2 cut(s)	61, 220
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	3 cut(s)	105, 182, 311
TaqI	TCGA	7 cut(s)	479, 509, 561, 734, 768, 815, 880
TasI	AATT	2 cut(s)	245, 741
TfiI	GAWTC	2 cut(s)	413, 481
Tru1I	TTAA	2 cut(s)	105, 134
Tru9I	TTAA	2 cut(s)	105, 134
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	2 cut(s)	172, 887
TspGWI	ACGGA	2 cut(s)	130, 662
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	786
XceI	RCATGY	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	733
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.