Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

58486414 .. 58486971

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGCCAGAGAAGAATGGCGTTCTTCTCTTCCTTAGCCTACAGCAACCACGGCGAGGGTGAAACTGAAAAACACAATGGTGCTCACTACCTTCGATCTAAGGCTCTTATCCTGGTCAAGATTTGGTGCCTGCTGTTGGTCTTTGTTGGGACTTTTGCTGCAGGAATGTCACCTGACTTCTTAAGGTGGAACGAGGCGTTCTTGGTTCTAGGCACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAAACAAGACTTTTGAGGGCTTGACTGAAAAGGAGTACCCTTTTGCCTGTATGCTGGCCTGTGTAGGGTTCTTGATCACAATGCTTGCAGATTGTGTGGTTTCATATGTCTATGCTAAGCAGAAGGACAGTCCAACCGACCCTGAATTTCAAGGGAAGGACGAGGCTCACAAGGTGAGATATGTATATATTCTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

156

Amino Acids

17.54

Weight (kDa)

6.5

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	38 - 137	2.2e-17	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	416
AdeI	CACNNNGTG	1 cut(s)	445
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	55, 136, 336
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	273, 422
AjnI	CCWGG	1 cut(s)	111
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	71, 162, 457
BanI	GGYRCC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	345
BfaI	CTAG	2 cut(s)	209, 469
BfmI	CTRYAG	2 cut(s)	40, 159
BfrI	CTTAAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	159
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 136, 336
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	3 cut(s)	55, 136, 336
BseMII	CTCAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	3 cut(s)	55, 136, 336
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	95, 345
Bsp1720I	GCTNAGC	1 cut(s)	387
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	95, 345
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	219, 401
Bst6I	CTCTTC	1 cut(s)	34
BstAFI	CTTAAG	1 cut(s)	181
BstC8I	GCNNGC	3 cut(s)	131, 327, 357
BstDEI	CTNAG	4 cut(s)	34, 99, 263, 387
BstDSI	CCRYGG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	98, 348
BstMBI	GATC	2 cut(s)	95, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	40, 159
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	131, 327, 357
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	38, 104, 248, 291, 329, 437
CviKI_1	RGCY	6 cut(s)	38, 104, 248, 291, 329, 437
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	34, 99, 263, 387
DpnI	GATC	2 cut(s)	97, 347
DpnII	GATC	2 cut(s)	95, 345
DraIII	CACNNNGTG	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	256
FaiI	YATR	8 cut(s)	254, 323, 376, 378, 384, 453, 457, 459
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	252
FauNDI	CATATG	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	209, 469
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	3 cut(s)	71, 162, 457
Hpy188III	TCNNGA	3 cut(s)	118, 262, 343
HpyAV	CCTTC	3 cut(s)	101, 388, 421
HpyCH4III	ACNGT	2 cut(s)	219, 401
HpyCH4V	TGCA	3 cut(s)	161, 256, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	34, 99, 263, 387
Hsp92II	CATG	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	95, 345
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	209, 469
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	2 cut(s)	97, 347
MboI	GATC	2 cut(s)	95, 345
MboII	GAAGA	3 cut(s)	16, 21, 24
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	4 cut(s)	49, 187, 280, 427
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	78
MspCI	CTTAAG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	2 cut(s)	95, 345
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	168
OliI	CACNNNNGTG	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	95, 345
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	5 cut(s)	93, 175, 188, 250, 447
SfcI	CTRYAG	2 cut(s)	40, 159
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	416
SspMI	CTAG	2 cut(s)	209, 469
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	219, 401
TaqI	TCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	363
Vha464I	CTTAAG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	416
XspI	CTAG	2 cut(s)	209, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.