Rh5BG365500

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002192
Physical Location & Seq
Forward (+)
57303381 .. 57304958
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG365500.1

Sequence Viewer

Length: 1017 bp
ATGGCTCGACCACTTCTCCTCCTCCAGCTCATCCTCCTCTCCCTCGCCCTCGCCGCCTCCGCCCACAGCGGCCACGGCGATGAAGACGAGGAACCAACCGCCGCAGATGACACTGACCTCCGCGCCAGCCCTCTGATCATGGCAAAGATTTGGTGTTTGATAGTTATCTTCTTCGGAACTTTCATCCCTGGAGTTTCTCCTTACTTCTTCAAATGGAATCAGGGTTTCTTGGTCCTCGGGACCCAGTTTGCTGGGGGCGTGTTTCTGGGGACGGCTCTGATGCATTTTCTGAGTGATGCTGATGAGACTTTCAAGGACCTGACTGACAAAGAGTACCCTTTTGCGTTCATGTTGGCTTGTGCTGGGTTCTTGCTGACAATGCTGGCTGATTGTGTCATTTCCTATGTGTTTTCCAAGAAAAGGGACGCTGGCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTAAACATGAAAAAGTCGTCACAGCATCACAGTCTCAGAGCTATAACCACTTTGCAAAGGCATCTGTCGCAAAAGTTAGTTCACGTGGGGATACTGTCCTGTTGATAGTAGCCTTGTGTTTCCACTCTGTCTTTGAGGGCATTGCAATTGGAGTTGCTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACAATTTCTCTTCATAAGGTATTTGCAGCTATTGCCATGGGAATAGCTCTTCTGCGAATGATGCCTAACCGTCCCTTCTTATATTGCACTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGCGTGGTCATTGGAATCATAATAGATGCGACAACCCAAGGTGCTGTGGCAGATTGGATATTTGCGATTTCAATGGGTCTGGCATGTGGTGTGTTTATCTATGTAGCTGTAAACCATTTATTGGCTAAGGGTTACACACCCGATAAGGCAGTTTCTGTGGACAAACCCCATTACAAGTTTTTGGCAGTGTTGTTGGGCGTTGGCGTTATAGCTGTTGTGATGATTTGGGACACTTGA

Protein Analysis

338

Amino Acids

36.45

Weight (kDa)

5.96

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 48 - 333 7.9e-55 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 901
AccII CGCG 1 cut(s) 123
AciI CCGC 6 cut(s) 54, 60, 69, 99, 102, 121
AcoI YGGCCR 1 cut(s) 70
AcvI CACGTG 1 cut(s) 548
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 420, 901
AgsI TTSAA 4 cut(s) 211, 313, 771, 852
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 7 cut(s) 28, 504, 632, 683, 701, 887, 992
AluI AGCT 7 cut(s) 28, 504, 632, 683, 701, 887, 992
Alw26I GTCTC 4 cut(s) 299, 443, 501, 617
AlwNI CAGNNNCTG 1 cut(s) 935
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 680
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 232, 240, 316
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 232, 240, 316
BbrPI CACGTG 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 692
BceAI ACGGC 2 cut(s) 91, 288
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 4 cut(s) 299, 443, 501, 617
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 4 cut(s) 54, 70, 102, 681
BlsI GCNGC 4 cut(s) 55, 71, 103, 682
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 3 cut(s) 232, 240, 316
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 232, 240, 316
BmiI GGNNCC 3 cut(s) 93, 241, 242
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 7 cut(s) 270, 286, 497, 533, 625, 705, 796
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 8, 210
Bpu10I CCTNAGC 1 cut(s) 906
BpuEI CTTGAG 2 cut(s) 438, 467
BsaAI YACGTR 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 164
BsaJI CCNNGG 5 cut(s) 73, 187, 235, 690, 817
BsaXI ACNNNNNCTCC 2 cut(s) 30, 33
Bsc4I CCNNNNNNNGG 2 cut(s) 420, 901
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 5 cut(s) 73, 187, 235, 690, 817
BseGI GGATG 2 cut(s) 30, 183
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 420, 901
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 3 cut(s) 281, 512, 612
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 3 cut(s) 8, 11, 26
BseXI GCAGC 1 cut(s) 692
BseYI CCCAGC 2 cut(s) 251, 362
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 236
BslFI GGGAC 4 cut(s) 253, 283, 437, 711
BslI CCNNNNNNNGG 2 cut(s) 420, 901
BsmAI GTCTC 4 cut(s) 299, 443, 501, 617
BsmFI GGGAC 4 cut(s) 253, 283, 437, 711
BsnI GGCC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 236
Bsp143I GATC 2 cut(s) 135, 442
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 6 cut(s) 54, 60, 69, 99, 102, 121
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 3 cut(s) 282, 511, 613
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 93, 241, 242
BspQI GCTCTTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 5 cut(s) 73, 187, 235, 690, 817
BssMI GATC 2 cut(s) 135, 442
BssT1I CCWWGG 2 cut(s) 690, 817
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 495, 559, 725
Bst6I CTCTTC 2 cut(s) 669, 708
BstAPI GCANNNNNTGC 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 127, 384, 430
BstDEI CTNAG 4 cut(s) 290, 498, 621, 906
BstDSI CCRYGG 2 cut(s) 73, 690
BstF5I GGATG 2 cut(s) 30, 183
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 138, 445
BstMAI GTCTC 4 cut(s) 299, 443, 501, 617
BstMBI GATC 2 cut(s) 135, 442
BstMWI GCNNNNNNNGC 8 cut(s) 53, 59, 75, 379, 530, 644, 686, 715
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 187
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 90
BstXI CCANNNNNNTGG 1 cut(s) 251
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 2 cut(s) 73, 690
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 30, 183
BtsI GCAGTG 2 cut(s) 741, 972
BtsIMutI CAGTG 3 cut(s) 111, 741, 972
Cac8I GCNNGC 3 cut(s) 127, 384, 430
CaiI CAGNNNCTG 1 cut(s) 935
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 232, 240, 316
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 334
CviAII CATG 5 cut(s) 139, 349, 470, 691, 864
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 4 cut(s) 290, 498, 621, 906
DpnI GATC 2 cut(s) 137, 444
DpnII GATC 2 cut(s) 135, 442
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 669, 708
EarI CTCTTC 2 cut(s) 669, 708
EciI GGCGGA 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 690, 817
Eco47I GGWCC 3 cut(s) 232, 240, 316
Eco72I CACGTG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 240, 316
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 690, 817
EcoT22I ATGCAT 1 cut(s) 285
ErhI CCWWGG 2 cut(s) 690, 817
FaeI CATG 5 cut(s) 142, 352, 473, 694, 867
FaqI GGGAC 4 cut(s) 253, 283, 437, 711
FatI CATG 5 cut(s) 138, 348, 469, 690, 863
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 54, 70, 102, 681
FokI GGATG 2 cut(s) 17, 170
Fsp4HI GCNGC 4 cut(s) 54, 70, 102, 681
GlaI GCGC 1 cut(s) 124
GluI GCNGC 4 cut(s) 54, 70, 102, 681
GsaI CCCAGC 2 cut(s) 255, 366
GsuI CTGGAG 2 cut(s) 8, 210
HaeIII GGCC 1 cut(s) 72
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 125
Hin1II CATG 5 cut(s) 142, 352, 473, 694, 867
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 3 cut(s) 217, 451, 795
Hpy166II GTNNAC 3 cut(s) 545, 892, 940
Hpy188I TCNGA 6 cut(s) 135, 176, 279, 291, 442, 501
Hpy188III TCNNGA 2 cut(s) 238, 446
Hpy8I GTNNAC 3 cut(s) 545, 892, 940
HpyAV CCTTC 1 cut(s) 739
HpyCH4III ACNGT 3 cut(s) 495, 559, 725
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 6 cut(s) 283, 518, 608, 680, 741, 758
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 59, 75, 379, 530, 644, 686, 715
HpyF3I CTNAG 4 cut(s) 290, 498, 621, 906
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 5 cut(s) 142, 352, 473, 694, 867
HspAI GCGC 1 cut(s) 123
KflI GGGWCCC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 2 cut(s) 135, 442
LguI GCTCTTC 1 cut(s) 708
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 7 cut(s) 270, 286, 497, 533, 625, 705, 796
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 2 cut(s) 481, 911
MalI GATC 2 cut(s) 137, 444
MboI GATC 2 cut(s) 135, 442
MboII GAAGA 6 cut(s) 95, 160, 163, 199, 656, 695
MfeI CAATTG 1 cut(s) 609
MluCI AATT 2 cut(s) 609, 657
MlyI GAGTC 1 cut(s) 445
Mph1103I ATGCAT 1 cut(s) 285
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 189
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 8 cut(s) 53, 59, 75, 379, 530, 644, 686, 715
NcoI CCATGG 1 cut(s) 690
NdeII GATC 2 cut(s) 135, 442
NlaIII CATG 5 cut(s) 142, 352, 473, 694, 867
NlaIV GGNNCC 3 cut(s) 93, 241, 242
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 867
PciSI GCTCTTC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 217, 795
PflMI CCANNNNNTGG 1 cut(s) 901
PkrI GCNGC 4 cut(s) 55, 71, 103, 682
PleI GAGTC 1 cut(s) 445
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
PpsI GAGTC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 2 cut(s) 240, 316
Psp5II RGGWCCY 2 cut(s) 240, 316
Psp6I CCWGG 1 cut(s) 187
PspCI CACGTG 1 cut(s) 548
PspFI CCCAGC 2 cut(s) 251, 362
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 3 cut(s) 93, 241, 242
PspPI GGNCC 3 cut(s) 232, 240, 316
PspPPI RGGWCCY 2 cut(s) 240, 316
PstNI CAGNNNCTG 1 cut(s) 935
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 4 cut(s) 54, 70, 102, 681
Sau3AI GATC 2 cut(s) 135, 442
Sau96I GGNCC 3 cut(s) 232, 240, 316
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 189
SfaNI GCATC 7 cut(s) 270, 286, 497, 533, 625, 705, 796
SinI GGWCC 3 cut(s) 232, 240, 316
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 446, 453
SmoI CTYRAG 2 cut(s) 446, 453
Sse9I AATT 2 cut(s) 609, 657
SsiI CCGC 6 cut(s) 54, 60, 69, 99, 102, 121
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 2 cut(s) 690, 817
TaaI ACNGT 3 cut(s) 495, 559, 725
TaiI ACGT 1 cut(s) 550
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 609, 657
TauI GCSGC 3 cut(s) 56, 72, 104
TfiI GAWTC 2 cut(s) 217, 795
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 3 cut(s) 118, 748, 972
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 5 cut(s) 96, 172, 337, 486, 656
TspRI CASTG 3 cut(s) 118, 748, 972
Van91I CCANNNNNTGG 1 cut(s) 901
VpaK11BI GGWCC 3 cut(s) 232, 240, 316
XceI RCATGY 1 cut(s) 867
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.