Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

29194817 .. 29195269

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1201400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTGGCTACAATCTTCTCAAGCTTTCTCTCTTCCTCTTCCTCACCCTCTCCACCTTGGCCTACAGCAGCGACGACGGTGATGAAACCAACAAGAACAACCACGCTCGCAGCCTTCACTCTAAGCCTCTAATGCTCGTAAAGATATGGTGCATGGTTTTGGTTTTTGTTGGGACATTTGCAGCCGGAATGTCTCCCTACTTCTTAAAGTGGAACGAGGGGTTTCTGGTTCTAGGAACGCAGTTTGCCGGCGGTATTTTTCTTGGAACTGCTCTCATGCACTTTCTCAGTGATTCAAACAAGACTTTCGAAAGCTTGACTGAGAAGGAATACCCTTTTGCATATATGATGGCGAGCCTGGGGTTCTTGATCACCATGCTTGGGGATTCTGTGGTTTCATATGTGTATGCTAAGCAGAAGGACAGTGACCCTGAAGTTCAAAGTAGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

151

Amino Acids

16.75

Weight (kDa)

5.85

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	46 - 140	4.4e-18	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	297, 440
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	25, 315
AluI	AGCT	2 cut(s)	25, 315
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	69, 111, 182
AsuHPI	GGTGA	3 cut(s)	37, 92, 364
AsuII	TTCGAA	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	81, 123, 194
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	64
BisI	GCNGC	3 cut(s)	70, 112, 183
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	71, 113, 184
Bme1390I	CCNGG	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	57, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	57, 358
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	301, 312
BseXI	GCAGC	3 cut(s)	81, 123, 194
BshFI	GGCC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	186, 249
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	300, 313
BspT104I	TTCGAA	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	57, 358
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	80, 425
Bst6I	CTCTTC	2 cut(s)	38, 44
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	4 cut(s)	7, 109, 250, 355
BstDEI	CTNAG	4 cut(s)	123, 287, 321, 411
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	81, 123, 194
BsuRI	GGCC	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	295, 430
Cac8I	GCNNGC	4 cut(s)	7, 109, 250, 355
Cfr10I	RCCGGY	1 cut(s)	248
CviAII	CATG	3 cut(s)	154, 277, 376
CviJI	RGCY	9 cut(s)	5, 9, 25, 62, 114, 127, 185, 315, 357
CviKI_1	RGCY	9 cut(s)	5, 9, 25, 62, 114, 127, 185, 315, 357
DdeI	CTNAG	4 cut(s)	123, 287, 321, 411
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	38, 44
EarI	CTCTTC	2 cut(s)	38, 44
Eco130I	CCWWGG	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	157, 280, 379
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	153, 276, 375
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	70, 112, 183
Fsp4HI	GCNGC	3 cut(s)	70, 112, 183
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	3 cut(s)	70, 112, 183
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	186, 249
Hin1II	CATG	3 cut(s)	157, 280, 379
HindIII	AAGCTT	2 cut(s)	23, 313
HinfI	GANTC	2 cut(s)	293, 386
HpaII	CCGG	2 cut(s)	186, 249
HphI	GGTGA	3 cut(s)	37, 92, 364
Hpy188III	TCNNGA	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	77, 80
HpyAV	CCTTC	3 cut(s)	125, 319, 412
HpyCH4III	ACNGT	2 cut(s)	80, 425
HpyCH4V	TGCA	4 cut(s)	153, 182, 280, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	4 cut(s)	123, 287, 321, 411
Hsp92II	CATG	3 cut(s)	157, 280, 379
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	369
LpnPI	CCDG	6 cut(s)	199, 212, 262, 344, 371, 444
Lsp1109I	GCAGC	3 cut(s)	81, 123, 194
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	3 cut(s)	8, 25, 31
MnlI	CCTC	5 cut(s)	47, 53, 59, 138, 211
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	1 cut(s)	206
MspI	CCGG	2 cut(s)	186, 249
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	133
NaeI	GCCGGC	1 cut(s)	250
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	1 cut(s)	369
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	157, 280, 379
NmuCI	GTSAC	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	309
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	293, 386
PkrI	GCNGC	3 cut(s)	71, 113, 184
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	3 cut(s)	70, 112, 183
Sau3AI	GATC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	4 cut(s)	27, 59, 317, 449
SfcI	CTRYAG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	80, 425
TaqI	TCGA	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	293, 386
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	2 cut(s)	295, 430
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	3 cut(s)	69, 111, 182
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	99, 387
TspRI	CASTG	2 cut(s)	295, 430
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.