Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

32597860 .. 32599523

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGTTCCCTCTTTTGCAGCTTCAGTTCAGTTGGTTCACTAGAAGAGTTGGTTGGTAATAGAAACTTTGTTTCCGGCTTCAGTTCAGTTGGTTCACTAGAAGATTTGGTTGTCATGACAAAGAAAGGAAAAGGACAGAAAAGGGCAGCAAGCACTTTACATCTCAAGTCTTCCACACGTTCACAGTCTGAAGACATTCCCAATGAATCAACACATGGTGACGAAGAGGTGGAAGGGCTGGAAACTGAGGCTACCAAGAGGAAAGGTAGAGGCCCTGCCAAAGGAGAAAAAGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGGATTATAACTCCCCAAGCTTTGCGAAGTATTTGGCCCCTCTTCAAGTCAGAGCTGCAAGGCCCATACATAACATGGGCAGAATATCCGCAAGATCAATTGGATAAGTTGTTTGACCTATGGAGGAATAAAAATTTCAAATTTGATTGCTCCGAGGAAGAACTGAAAGATGTATTCACGGAACATATCAAGACTCGTTATAGTGACTGGATGAGTGAAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACACTCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATGGCTAAAAGAAACGTGGCAGAAAATTCCATTGAGTCTAGGAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

231

Amino Acids

26.42

Weight (kDa)

6.48

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AciI	CCGC	2 cut(s)	413, 562
AcsI	RAATTY	4 cut(s)	457, 464, 543, 669
AcuI	CTGAAG	3 cut(s)	7, 64, 210
AdeI	CACNNNGTG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	370, 463, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	4 cut(s)	21, 344, 379, 584
AluI	AGCT	4 cut(s)	21, 344, 379, 584
AoxI	GGCC	3 cut(s)	271, 359, 385
ApeKI	GCWGC	5 cut(s)	18, 146, 379, 578, 581
ApoI	RAATTY	4 cut(s)	457, 464, 543, 669
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	272, 360, 386
AsuHPI	GGTGA	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	162, 198
BbvI	GCAGC	5 cut(s)	30, 158, 366, 565, 593
BceAI	ACGGC	1 cut(s)	313
BfaI	CTAG	3 cut(s)	41, 98, 683
BfmI	CTRYAG	1 cut(s)	579
BisI	GCNGC	5 cut(s)	19, 147, 380, 579, 582
BlsI	GCNGC	5 cut(s)	20, 148, 381, 580, 583
BmgT120I	GGNCC	3 cut(s)	272, 360, 386
BmiI	GGNNCC	1 cut(s)	362
BpiI	GAAGAC	2 cut(s)	162, 198
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	536
BseXI	GCAGC	5 cut(s)	30, 158, 366, 565, 593
BshFI	GGCC	3 cut(s)	273, 361, 387
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	273, 361, 387
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	2 cut(s)	413, 562
BspANI	GGCC	3 cut(s)	273, 361, 387
BspCNI	CTCAG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	536
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	4 cut(s)	39, 219, 371, 684
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	540
BstKTI	GATC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	30, 158, 366, 565, 593
BstV2I	GAAGAC	2 cut(s)	162, 198
BstXI	CCANNNNNNTGG	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	273, 361, 387
BtsCI	GGATG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	272, 360, 386
CviAII	CATG	4 cut(s)	115, 215, 301, 399
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
DraIII	CACNNNGTG	1 cut(s)	218
Eam1104I	CTCTTC	4 cut(s)	39, 219, 371, 684
EarI	CTCTTC	4 cut(s)	39, 219, 371, 684
Eco57I	CTGAAG	3 cut(s)	7, 64, 210
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	272
FaeI	CATG	4 cut(s)	118, 218, 304, 402
FatI	CATG	4 cut(s)	114, 214, 300, 398
Fnu4HI	GCNGC	5 cut(s)	19, 147, 380, 579, 582
FokI	GGATG	1 cut(s)	547
Fsp4HI	GCNGC	5 cut(s)	19, 147, 380, 579, 582
FspBI	CTAG	3 cut(s)	41, 98, 683
GluI	GCNGC	5 cut(s)	19, 147, 380, 579, 582
HaeIII	GGCC	3 cut(s)	273, 361, 387
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	4 cut(s)	118, 218, 304, 402
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	3 cut(s)	206, 517, 679
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	3 cut(s)	38, 95, 182
Hpy188I	TCNGA	4 cut(s)	190, 376, 478, 549
Hpy188III	TCNNGA	2 cut(s)	115, 514
Hpy8I	GTNNAC	3 cut(s)	38, 95, 182
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	178, 659
HpyCH4V	TGCA	4 cut(s)	18, 308, 382, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	178, 659
Hsp92II	CATG	4 cut(s)	118, 218, 304, 402
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	5 cut(s)	88, 224, 288, 517, 630
Lsp1109I	GCAGC	5 cut(s)	30, 158, 366, 565, 593
MaeI	CTAG	3 cut(s)	41, 98, 683
MaeII	ACGT	2 cut(s)	178, 659
MaeIII	GTNAC	2 cut(s)	218, 527
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	7 cut(s)	56, 113, 162, 203, 236, 358, 494
MfeI	CAATTG	1 cut(s)	422
MluCI	AATT	5 cut(s)	422, 457, 464, 543, 669
MlyI	GAGTC	2 cut(s)	511, 688
MnlI	CCTC	9 cut(s)	20, 220, 241, 252, 263, 318, 374, 441, 472
MroXI	GAANNNNTTC	1 cut(s)	195
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	4 cut(s)	118, 218, 304, 402
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	2 cut(s)	218, 527
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	20, 148, 381, 580, 583
PleI	GAGTC	2 cut(s)	511, 687
PpsI	GAGTC	2 cut(s)	511, 687
PsiI	TTATAA	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	3 cut(s)	272, 360, 386
PstI	CTGCAG	1 cut(s)	583
SatI	GCNGC	5 cut(s)	19, 147, 380, 579, 582
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	3 cut(s)	272, 360, 386
SchI	GAGTC	2 cut(s)	511, 688
SetI	ASST	9 cut(s)	23, 181, 231, 268, 346, 381, 444, 586, 662
SfcI	CTRYAG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	422, 457, 464, 543, 669
SsiI	CCGC	2 cut(s)	413, 562
SspMI	CTAG	3 cut(s)	41, 98, 683
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	2 cut(s)	181, 662
TaqI	TCGA	1 cut(s)	586
TasI	AATT	5 cut(s)	422, 457, 464, 543, 669
TfiI	GAWTC	1 cut(s)	206
TseFI	GTSAC	2 cut(s)	218, 527
TseI	GCWGC	5 cut(s)	18, 146, 379, 578, 581
Tsp45I	GTSAC	2 cut(s)	218, 527
TspDTI	ATGAA	3 cut(s)	219, 317, 657
TspGWI	ACGGA	2 cut(s)	518, 591
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	4 cut(s)	457, 464, 543, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	3 cut(s)	41, 98, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.