Rh5BG365700

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002192
Physical Location & Seq
Forward (+)
57384677 .. 57385863
1187 bp
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UTR
Exon/CDS
Intron
Rh5BG365700.1

Sequence Viewer

Length: 696 bp
ATGCACTTCCTGAGTGATTCAGACAGGACTTTTCAGGGCTTGACTGAAAAGGAGTACCCTTTTGCCTATATGCTGGCATGTATGGGGTTCTTGATCACTATGCTTGCTGATTGTGTTGTTTCTTATGTGTATGGTAAGCAGGAGGGTAGTACTACTGACCCAGAAGTTCTAGGAAAGGAAGAGGCTCACAAGGGCCATGATACTCACCACATTGCAGCGGTTGGTTCATTCAGGGACACAATTCTGTTGATCGTAGCCTTGTGCTTCCACTCTTTCTTTGAGGGGATTGCAATTGGGATTGCCAAGACAAAACTGGATGCTTGGAAAGCCTTGTGGACAGTGTGTGTGCACAAAATCATTGCAGCTATTGCCATGAGCATTGCCCTTCTTCGCATGATTCCAAATCGGCCATTCATATCATGCATGGCATATGCTTTTGTATTTGCCATTTCCAGTCCAGTTGGTGTAGGAGTTGGGATCATAATAGACGCCAAAACCCAAGGTGCCACAGCAGATTGGATGTTTGCTATTTCTACAGCTTTGGCTTGTGGAGTGTTCATCTATGTGTCGATAAATCATTTGCTTTCGAAAGGTTACACAGCTCAAAATGCAGTCTCTGTTGATAAACCCCATTACAAGTTTTTGGCTGTTGTTTTTGGTGTTGGGGTGATCTCTGTTGCCATGATCTGGGACTAA

Protein Analysis

231

Amino Acids

25.16

Weight (kDa)

6.49

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 1 - 226 5.4e-35 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 503
AccB7I CCANNNNNTGG 1 cut(s) 687
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 485
AcoI YGGCCR 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 2 cut(s) 56, 151
AfiI CCNNNNNNNGG 1 cut(s) 687
AluBI AGCT 3 cut(s) 365, 539, 602
AluI AGCT 3 cut(s) 365, 539, 602
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 619
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 1 cut(s) 485
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 2 cut(s) 193, 407
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 215, 362
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 197, 679
AsuII TTCGAA 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 227, 374
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 2 cut(s) 216, 363
BlsI GCNGC 2 cut(s) 217, 364
BmcAI AGTACT 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 505
BmsI GCATC 1 cut(s) 307
Bpu14I TTCGAA 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 499
Bsc4I CCNNNNNNNGG 1 cut(s) 687
Bse1I ACTGG 3 cut(s) 318, 453, 458
Bse3DI GCAATG 3 cut(s) 210, 357, 378
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 2 cut(s) 322, 525
BseLI CCNNNNNNNGG 1 cut(s) 687
BseMI GCAATG 3 cut(s) 210, 357, 378
BseNI ACTGG 3 cut(s) 318, 453, 458
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 2 cut(s) 227, 374
BshFI GGCC 2 cut(s) 195, 409
BshNI GGYRCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 351
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 687
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 2 cut(s) 195, 409
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 5 cut(s) 93, 249, 477, 669, 684
BspACI CCGC 1 cut(s) 218
BspANI GGCC 2 cut(s) 195, 409
BspLI GGNNCC 1 cut(s) 505
BspPI GGATC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 503
BsrDI GCAATG 3 cut(s) 210, 357, 378
BsrI ACTGG 3 cut(s) 318, 453, 458
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 5 cut(s) 93, 249, 477, 669, 684
BssNI GRCGYC 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 75, 105
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 2 cut(s) 322, 525
BstKTI GATC 5 cut(s) 96, 252, 480, 672, 687
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 5 cut(s) 93, 249, 477, 669, 684
BstMWI GCNNNNNNNGC 3 cut(s) 326, 368, 608
BstNSI RCATGY 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 227, 374
BsuRI GGCC 2 cut(s) 195, 409
BtsCI GGATG 2 cut(s) 322, 525
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 75, 105
CaiI CAGNNNCTG 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 497
Csp6I GTAC 2 cut(s) 55, 150
CviAII CATG 7 cut(s) 78, 197, 373, 394, 420, 424, 682
CviQI GTAC 2 cut(s) 55, 150
DdeI CTNAG 1 cut(s) 11
DpnI GATC 5 cut(s) 95, 251, 479, 671, 686
DpnII GATC 5 cut(s) 93, 249, 477, 669, 684
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 499
EcoT22I ATGCAT 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 7 cut(s) 81, 200, 376, 397, 423, 427, 685
FaqI GGGAC 1 cut(s) 248
FatI CATG 7 cut(s) 77, 196, 372, 393, 419, 423, 681
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 216, 363
FokI GGATG 2 cut(s) 329, 532
Fsp4HI GCNGC 2 cut(s) 216, 363
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 216, 363
HaeIII GGCC 2 cut(s) 195, 409
HgaI GACGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 7 cut(s) 81, 200, 376, 397, 423, 427, 685
HinfI GANTC 2 cut(s) 17, 397
HphI GGTGA 2 cut(s) 197, 679
Hpy166II GTNNAC 2 cut(s) 336, 349
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 10, 91
Hpy8I GTNNAC 2 cut(s) 336, 349
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 7 cut(s) 4, 215, 290, 349, 362, 423, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 368, 608
HpyF3I CTNAG 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 7 cut(s) 81, 200, 376, 397, 423, 427, 685
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 5 cut(s) 93, 249, 477, 669, 684
Lsp1109I GCAGC 2 cut(s) 227, 374
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 593
MalI GATC 5 cut(s) 95, 251, 479, 671, 686
MboI GATC 5 cut(s) 93, 249, 477, 669, 684
MboII GAAGA 2 cut(s) 191, 380
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 2 cut(s) 240, 291
MnlI CCTC 3 cut(s) 136, 175, 274
Mph1103I ATGCAT 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 218
MunI CAATTG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 326, 368, 608
NdeI CATATG 1 cut(s) 430
NdeII GATC 5 cut(s) 93, 249, 477, 669, 684
NlaIII CATG 7 cut(s) 81, 200, 376, 397, 423, 427, 685
NlaIV GGNNCC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 425
NspI RCATGY 1 cut(s) 81
NspV TTCGAA 1 cut(s) 587
PfeI GAWTC 2 cut(s) 17, 397
PflMI CCANNNNNTGG 1 cut(s) 687
PkrI GCNGC 2 cut(s) 217, 364
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 56, 151
RsaNI GTAC 2 cut(s) 55, 150
RseI CAYNNNNRTG 1 cut(s) 563
SatI GCNGC 2 cut(s) 216, 363
Sau3AI GATC 5 cut(s) 93, 249, 477, 669, 684
Sau96I GGNCC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 151
SduI GDGCHC 1 cut(s) 351
SetI ASST 5 cut(s) 367, 505, 541, 595, 604
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 563
Sse9I AATT 2 cut(s) 240, 291
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 569, 587
TasI AATT 2 cut(s) 240, 291
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 2 cut(s) 17, 397
TscAI CASTG 1 cut(s) 345
TseI GCWGC 2 cut(s) 215, 362
TspDTI ATGAA 3 cut(s) 216, 403, 547
TspRI CASTG 1 cut(s) 345
Van91I CCANNNNNTGG 1 cut(s) 687
VneI GTGCAC 1 cut(s) 347
XceI RCATGY 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XspI CTAG 1 cut(s) 170
ZrmI AGTACT 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.