Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

51428997 .. 51432567

Gene Structure 3571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG390400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTCGACCACTTCTCCTCCTCCTCCTCCTCTCCCTCGCCCTCGCCGCCTCCGCCCACAGCGGCCACGGCGATGAAGACGAGGAACCAACCGCCGCAGACGACACTGACCTCCGCGCCAGGCCTCTGATCATGGCAAAGATTTGGTGTTTGATAGTTATCTTCTTCGGAACTTTCATCCCTGGAGTTTCCCCTTACTTCTTCAAATGGAATCAGGGTTTCTTGGTTCTGGGGACCCAGTTTGCTGGAGGCGTGTTTCTGGGGACGGCTCTGATGCATTTTCTGAGCGACGCTGATGAGACTTTTAAGGACTTGACTAAAAAAGAGTACCCTTTCGCGTTCATGTTGGCTTGTGCTGGGTTCTTGTTGACAATGCTGGCTGACTGTGTCATTTCCTATGTGTTTTCCAAGAAAAGGGACGCTGTCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTGAACATGAAAAAGGCGTCACAGCATCACAGTGTCAGAGCCATAACCACTTTGCAAACGCATCTGTCGCAAATGTTAGTTCACTTGGGGATAGTGTCCTGTTGATAGTAGCCTTGTGTTTTCACTCTGTCTTTGAGGGCATTGCAATTGGAGTTGCTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACAATTTCTCTGCATAAGGTATTTGCAGCTATTGCCATGGGAATTGCTCTTCTGCGAATGATGCCTAACCGTCCCTTCTTATCATGCGCTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGTGTGGCCATTGGAATCATAATAGACGCAACAACCCAAGGTGCTGTGGCGGATTGGATATTTGCGATTTCAATGGGTCTGGCATGTGGTGTGTTTATCTATGTAGCTGTAAACCATTTATTGGCAAAGGGTTACACACCCGATAAGGCAGTTTCTGTGGACAAACCCCATTACAAGTTTTTGGCAGTGTCGTTGGGCGTTGGCGTTATAGCTGTTGTGATGATTTGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

336

Amino Acids

36.04

Weight (kDa)

5.76

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	46 - 331	1.8e-52	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccII	CGCG	2 cut(s)	117, 338
AciI	CCGC	7 cut(s)	48, 54, 63, 93, 96, 115, 824
AcoI	YGGCCR	2 cut(s)	64, 780
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	414, 895
AgsI	TTSAA	4 cut(s)	205, 461, 765, 846
AjnI	CCWGG	2 cut(s)	119, 181
AluBI	AGCT	4 cut(s)	626, 677, 881, 986
AluI	AGCT	4 cut(s)	626, 677, 881, 986
Alw26I	GTCTC	4 cut(s)	293, 430, 437, 611
AlwNI	CAGNNNCTG	1 cut(s)	929
AoxI	GGCC	3 cut(s)	64, 122, 780
ApeKI	GCWGC	2 cut(s)	674, 737
AspLEI	GCGC	2 cut(s)	119, 737
AspS9I	GGNCC	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	782
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	686, 724
BceAI	ACGGC	2 cut(s)	85, 282
BciT130I	CCWGG	2 cut(s)	121, 183
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	4 cut(s)	293, 430, 437, 611
BisI	GCNGC	5 cut(s)	48, 64, 96, 675, 738
BlsI	GCNGC	5 cut(s)	49, 65, 97, 676, 739
Bme1390I	CCNGG	2 cut(s)	121, 183
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	3 cut(s)	87, 235, 236
BmrFI	CCNGG	2 cut(s)	121, 183
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	5 cut(s)	264, 491, 527, 619, 699
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	204, 267
BpuEI	CTTGAG	2 cut(s)	432, 461
BsaBI	GATNNNNATC	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	4 cut(s)	67, 181, 684, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 33
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 895
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	121, 183
BseDI	CCNNGG	4 cut(s)	67, 181, 684, 811
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	2 cut(s)	414, 895
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	2 cut(s)	275, 606
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	5 cut(s)	8, 11, 14, 17, 20
BseXI	GCAGC	2 cut(s)	686, 724
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	117, 338
BshFI	GGCC	3 cut(s)	66, 124, 782
BslFI	GGGAC	4 cut(s)	247, 277, 431, 705
BslI	CCNNNNNNNGG	2 cut(s)	414, 895
BsmAI	GTCTC	4 cut(s)	293, 430, 437, 611
BsmFI	GGGAC	4 cut(s)	247, 277, 431, 705
BsnI	GGCC	3 cut(s)	66, 124, 782
Bsp143I	GATC	2 cut(s)	129, 436
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	7 cut(s)	48, 54, 63, 93, 96, 115, 824
BspANI	GGCC	3 cut(s)	66, 124, 782
BspCNI	CTCAG	2 cut(s)	276, 607
BspFNI	CGCG	2 cut(s)	117, 338
BspLI	GGNNCC	3 cut(s)	87, 235, 236
BspQI	GCTCTTC	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	67, 181, 684, 811
BssMI	GATC	2 cut(s)	129, 436
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	684, 811
Bst2UI	CCWGG	2 cut(s)	121, 183
Bst4CI	ACNGT	3 cut(s)	386, 489, 719
Bst6I	CTCTTC	1 cut(s)	702
BstACI	GRCGYC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	284, 615
BstDSI	CCRYGG	2 cut(s)	67, 684
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	117, 338
BstHHI	GCGC	2 cut(s)	119, 737
BstKTI	GATC	2 cut(s)	132, 439
BstMAI	GTCTC	4 cut(s)	293, 430, 437, 611
BstMBI	GATC	2 cut(s)	129, 436
BstMWI	GCNNNNNNNGC	8 cut(s)	47, 53, 69, 524, 638, 680, 709, 743
BstNI	CCWGG	2 cut(s)	121, 183
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	2 cut(s)	119, 181
BstUI	CGCG	2 cut(s)	117, 338
BstV1I	GCAGC	2 cut(s)	686, 724
BstV2I	GAAGAC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	66, 124, 782
BtgI	CCRYGG	2 cut(s)	67, 684
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	3 cut(s)	105, 494, 966
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	929
CfoI	GCGC	2 cut(s)	119, 737
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	4 cut(s)	299, 428, 463, 809
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	6 cut(s)	133, 343, 464, 685, 732, 858
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	284, 615
DpnI	GATC	2 cut(s)	131, 438
DpnII	GATC	2 cut(s)	129, 436
EaeI	YGGCCR	2 cut(s)	64, 780
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
EciI	GGCGGA	2 cut(s)	43, 839
Eco130I	CCWWGG	2 cut(s)	684, 811
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	119, 181
EcoT14I	CCWWGG	2 cut(s)	684, 811
EcoT22I	ATGCAT	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	684, 811
FaeI	CATG	6 cut(s)	136, 346, 467, 688, 735, 861
FaqI	GGGAC	4 cut(s)	247, 277, 431, 705
FatI	CATG	6 cut(s)	132, 342, 463, 684, 731, 857
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	48, 64, 96, 675, 738
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	5 cut(s)	48, 64, 96, 675, 738
GlaI	GCGC	2 cut(s)	118, 736
GluI	GCNGC	5 cut(s)	48, 64, 96, 675, 738
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	2 cut(s)	204, 267
HaeIII	GGCC	3 cut(s)	66, 124, 782
HgaI	GACGC	4 cut(s)	299, 428, 463, 809
HhaI	GCGC	2 cut(s)	119, 737
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	6 cut(s)	136, 346, 467, 688, 735, 861
Hin6I	GCGC	2 cut(s)	117, 735
HinP1I	GCGC	2 cut(s)	117, 735
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	3 cut(s)	211, 445, 789
Hpy166II	GTNNAC	4 cut(s)	369, 539, 886, 934
Hpy188I	TCNGA	6 cut(s)	129, 170, 273, 285, 436, 495
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	4 cut(s)	369, 539, 886, 934
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	733
HpyCH4III	ACNGT	3 cut(s)	386, 489, 719
HpyCH4V	TGCA	6 cut(s)	277, 512, 602, 661, 674, 752
HpyF10VI	GCNNNNNNNGC	8 cut(s)	47, 53, 69, 524, 638, 680, 709, 743
HpyF3I	CTNAG	2 cut(s)	284, 615
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	6 cut(s)	136, 346, 467, 688, 735, 861
HspAI	GCGC	2 cut(s)	117, 735
KflI	GGGWCCC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	129, 436
LguI	GCTCTTC	1 cut(s)	702
Lsp1109I	GCAGC	2 cut(s)	686, 724
LweI	GCATC	5 cut(s)	264, 491, 527, 619, 699
MaeIII	GTNAC	2 cut(s)	475, 905
MalI	GATC	2 cut(s)	131, 438
MboI	GATC	2 cut(s)	129, 436
MboII	GAAGA	5 cut(s)	89, 154, 157, 193, 689
MfeI	CAATTG	1 cut(s)	603
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	3 cut(s)	603, 651, 690
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	1 cut(s)	439
Mox20I	TGGCCA	1 cut(s)	782
Mph1103I	ATGCAT	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	2 cut(s)	72, 487
Msp20I	TGGCCA	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	121, 183
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	2 cut(s)	121, 183
MvnI	CGCG	2 cut(s)	117, 338
MwoI	GCNNNNNNNGC	8 cut(s)	47, 53, 69, 524, 638, 680, 709, 743
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	2 cut(s)	129, 436
NlaIII	CATG	6 cut(s)	136, 346, 467, 688, 735, 861
NlaIV	GGNNCC	3 cut(s)	87, 235, 236
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	1 cut(s)	861
PceI	AGGCCT	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	702
PfeI	GAWTC	2 cut(s)	211, 789
PflFI	GACNNNGTC	2 cut(s)	386, 422
PflMI	CCANNNNNTGG	1 cut(s)	895
PkrI	GCNGC	5 cut(s)	49, 65, 97, 676, 739
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	119, 181
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	119, 181
PspN4I	GGNNCC	3 cut(s)	87, 235, 236
PspPI	GGNCC	1 cut(s)	234
PspPPI	RGGWCCY	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	929
PsyI	GACNNNGTC	2 cut(s)	386, 422
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	72, 487
SapI	GCTCTTC	1 cut(s)	702
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	5 cut(s)	48, 64, 96, 675, 738
Sau3AI	GATC	2 cut(s)	129, 436
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	2 cut(s)	121, 183
SetI	ASST	7 cut(s)	114, 628, 669, 679, 817, 883, 988
SfaNI	GCATC	5 cut(s)	264, 491, 527, 619, 699
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	2 cut(s)	72, 487
SmlI	CTYRAG	2 cut(s)	440, 447
SmoI	CTYRAG	2 cut(s)	440, 447
Sse9I	AATT	3 cut(s)	603, 651, 690
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	7 cut(s)	48, 54, 63, 93, 96, 115, 824
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	119, 181
StyI	CCWWGG	2 cut(s)	684, 811
TaaI	ACNGT	3 cut(s)	386, 489, 719
TaqI	TCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	603, 651, 690
TauI	GCSGC	3 cut(s)	50, 66, 98
TfiI	GAWTC	2 cut(s)	211, 789
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	3 cut(s)	112, 494, 966
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	674, 737
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	4 cut(s)	90, 166, 331, 480
TspRI	CASTG	3 cut(s)	112, 494, 966
Tth111I	GACNNNGTC	2 cut(s)	386, 422
Van91I	CCANNNNNTGG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	234
XceI	RCATGY	1 cut(s)	861
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.