Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

15835762 .. 15837211

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTTGCTACAATACTCTCAAGCTCTCTCTCTTCCTCTGCCTCACCCTCTCTGCCTTGGCGTTCAGCAGCCACAATGACAAGGAAAGCCACAGGAGCGACGAGGCTGACAGCCTTCAGTCTAAGCCTCTAATTCTGGTCAAGATCTGGTGCTTGGTTTTGGTCTTTGTTGGGACATTTGCAGCTGGAATGTCACCCTACTTCCTAAAGTGGAATGAGGGGTTCTTGGTTCTAGGCACACAGTTCGCTGGCGGAGTGTTTTTGGGAACAGCTCTCATGCACTTTCTGAGTGATTCAAACAAGACTTTCCAAAGCTTGACTGAGAAGGAGTACCCTTTTGCATTTATGCTGGCCAGTGTGGGGTTCTTGATCACTATGCTTGCGGATTGTGTTGTTTCCTATGTGTATGCTAAGCAAGAGTGCAGTGACCTTGAAGTTCACGGAAAGGACGGTCACAAGGGCCACGAGAGTGGTCATGGTCACCACCCTGCAACAGTTGGTTCAGTTGGGGACAGCATTTTGTTGATCGTAGCCTTATGTTTCCATTCTTTCTTTGAGGGCATTGCAATCGGAGTTGCCAAGACAAAAGCAGAAGCTTGGAAGGCTTTGTGGACAGTCAGTGTGCACAAGATCATTGCAGCCATTGCCATGGGCATTGCTCTCCTCCGCATGCTTCCGAACCGCCCCTTCTTATCATGCATGGCGTATGCTTTCGTGTTCGGCATTTCGAGTCCAGTTGGTGTGGGAGTTGGCATCACAATAGATTCCACAACCCAAGGTGCCACAGCAGATTGGCTCTTCGCCATTTCCATAGGTTTGGCATGTGGGGTGTTCATATATGTATCCATAAACCATCTGCTGTCAAAGGGTTACACAGCTCAGAAGGCAGTCTCTGTTGACAAACCCCATTACAAGTTTTTGGCTGTGTTGTTTGGCATTGGAGTTATCTCTGTTGCCATGTTCTGGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

325

Amino Acids

35.0

Weight (kDa)

6.88

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	779
AccB7I	CCANNNNNTGG	1 cut(s)	963
AciI	CCGC	4 cut(s)	252, 383, 667, 682
AcoI	YGGCCR	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	360, 963
AgsI	TTSAA	2 cut(s)	297, 434
AleI	CACNNNNGTG	1 cut(s)	468
AluBI	AGCT	6 cut(s)	25, 185, 272, 315, 596, 878
AluI	AGCT	6 cut(s)	25, 185, 272, 315, 596, 878
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	895
Alw44I	GTGCAC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	2 cut(s)	351, 460
ApaLI	GTGCAC	1 cut(s)	623
ApeKI	GCWGC	3 cut(s)	69, 182, 638
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	3 cut(s)	37, 186, 473
BaeGI	GKGCMC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	779
BauI	CACGAG	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	81, 194, 650
BccI	CCATC	1 cut(s)	861
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 550, 584
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	895
BfaI	CTAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	853
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	3 cut(s)	70, 183, 639
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	71, 184, 640
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	781
BmsI	GCATC	1 cut(s)	762
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	57, 648, 775
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 963
Bse1I	ACTGG	2 cut(s)	354, 734
Bse3DI	GCAATG	4 cut(s)	561, 633, 642, 654
BseDI	CCNNGG	3 cut(s)	57, 648, 775
BseLI	CCNNNNNNNGG	2 cut(s)	360, 963
BseMI	GCAATG	4 cut(s)	561, 633, 642, 654
BseMII	CTCAG	3 cut(s)	278, 312, 893
BseNI	ACTGG	2 cut(s)	354, 734
BseRI	GAGGAG	1 cut(s)	653
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	3 cut(s)	81, 194, 650
BsgI	GTGCAG	1 cut(s)	442
BshFI	GGCC	2 cut(s)	353, 462
BshNI	GGYRCC	1 cut(s)	779
BsiHKAI	GWGCWC	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	187, 524
BslI	CCNNNNNNNGG	2 cut(s)	360, 963
BsmAI	GTCTC	1 cut(s)	895
BsmFI	GGGAC	2 cut(s)	187, 524
BsnI	GGCC	2 cut(s)	353, 462
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	4 cut(s)	144, 369, 525, 630
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	4 cut(s)	252, 383, 667, 682
BspANI	GGCC	2 cut(s)	353, 462
BspCNI	CTCAG	3 cut(s)	279, 313, 892
BspLI	GGNNCC	1 cut(s)	781
BspQI	GCTCTTC	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	779
BsrDI	GCAATG	4 cut(s)	561, 633, 642, 654
BsrI	ACTGG	2 cut(s)	354, 734
BssECI	CCNNGG	3 cut(s)	57, 648, 775
BssMI	GATC	4 cut(s)	144, 369, 525, 630
BssSI	CACGAG	1 cut(s)	464
BssT1I	CCWWGG	3 cut(s)	57, 648, 775
Bst2BI	CACGAG	1 cut(s)	464
Bst4CI	ACNGT	4 cut(s)	243, 452, 496, 616
Bst6I	CTCTTC	2 cut(s)	38, 803
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	5 cut(s)	7, 250, 351, 381, 671
BstDEI	CTNAG	5 cut(s)	123, 287, 321, 411, 879
BstDSI	CCRYGG	1 cut(s)	648
BstEII	GGTNACC	1 cut(s)	479
BstKTI	GATC	4 cut(s)	147, 372, 528, 633
BstMAI	GTCTC	1 cut(s)	895
BstMBI	GATC	4 cut(s)	144, 369, 525, 630
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 602, 644, 884
BstNSI	RCATGY	2 cut(s)	673, 825
BstPI	GGTNACC	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	3 cut(s)	81, 194, 650
BstX2I	RGATCY	1 cut(s)	144
BstXI	CCANNNNNNTGG	3 cut(s)	470, 649, 817
BstYI	RGATCY	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	2 cut(s)	353, 462
BtgI	CCRYGG	1 cut(s)	648
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	3 cut(s)	361, 430, 625
Cac8I	GCNNGC	5 cut(s)	7, 250, 351, 381, 671
CaiI	CAGNNNCTG	1 cut(s)	893
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	8 cut(s)	277, 476, 649, 670, 696, 700, 822, 958
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	5 cut(s)	123, 287, 321, 411, 879
DpnI	GATC	4 cut(s)	146, 371, 527, 632
DpnII	GATC	4 cut(s)	144, 369, 525, 630
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	38, 803
EarI	CTCTTC	2 cut(s)	38, 803
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	3 cut(s)	57, 648, 775
Eco57I	CTGAAG	1 cut(s)	101
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoT14I	CCWWGG	3 cut(s)	57, 648, 775
EcoT22I	ATGCAT	1 cut(s)	701
ErhI	CCWWGG	3 cut(s)	57, 648, 775
FaeI	CATG	8 cut(s)	280, 479, 652, 673, 699, 703, 825, 961
FaqI	GGGAC	2 cut(s)	187, 524
FatI	CATG	8 cut(s)	276, 475, 648, 669, 695, 699, 821, 957
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	70, 183, 639
Fsp4HI	GCNGC	3 cut(s)	70, 183, 639
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	3 cut(s)	70, 183, 639
HaeIII	GGCC	2 cut(s)	353, 462
Hin1II	CATG	8 cut(s)	280, 479, 652, 673, 699, 703, 825, 961
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HindIII	AAGCTT	2 cut(s)	313, 594
HinfI	GANTC	4 cut(s)	293, 730, 764, 968
HphI	GGTGA	3 cut(s)	37, 186, 473
Hpy166II	GTNNAC	4 cut(s)	439, 612, 625, 898
Hpy188I	TCNGA	4 cut(s)	288, 572, 678, 882
Hpy188III	TCNNGA	3 cut(s)	142, 367, 972
Hpy8I	GTNNAC	4 cut(s)	439, 612, 625, 898
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	5 cut(s)	125, 319, 595, 697, 877
HpyCH4III	ACNGT	4 cut(s)	243, 452, 496, 616
HpyCH4V	TGCA	9 cut(s)	182, 280, 341, 423, 491, 566, 625, 638, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 602, 644, 884
HpyF3I	CTNAG	5 cut(s)	123, 287, 321, 411, 879
Hsp92II	CATG	8 cut(s)	280, 479, 652, 673, 699, 703, 825, 961
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	144, 369, 525, 630
LguI	GCTCTTC	1 cut(s)	803
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	3 cut(s)	81, 194, 650
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	5 cut(s)	192, 425, 452, 479, 869
MalI	GATC	4 cut(s)	146, 371, 527, 632
MboI	GATC	4 cut(s)	144, 369, 525, 630
MboII	GAAGA	2 cut(s)	25, 790
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	627
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	2 cut(s)	739, 962
MnlI	CCTC	8 cut(s)	47, 53, 59, 97, 138, 211, 550, 674
Mox20I	TGGCCA	1 cut(s)	353
Mph1103I	ATGCAT	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	468, 647
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	96, 602, 644, 884
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	4 cut(s)	144, 369, 525, 630
NlaIII	CATG	8 cut(s)	280, 479, 652, 673, 699, 703, 825, 961
NlaIV	GGNNCC	1 cut(s)	781
NmuCI	GTSAC	4 cut(s)	192, 425, 452, 479
NsiI	ATGCAT	1 cut(s)	701
NspI	RCATGY	2 cut(s)	673, 825
OliI	CACNNNNGTG	1 cut(s)	468
PaeI	GCATGC	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	803
PfeI	GAWTC	2 cut(s)	293, 764
PflMI	CCANNNNNTGG	1 cut(s)	963
PkrI	GCNGC	3 cut(s)	71, 184, 640
PleI	GAGTC	2 cut(s)	738, 962
PpsI	GAGTC	2 cut(s)	738, 962
PspEI	GGTNACC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	781
PspPI	GGNCC	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	2 cut(s)	468, 647
SapI	GCTCTTC	1 cut(s)	803
SatI	GCNGC	3 cut(s)	70, 183, 639
Sau3AI	GATC	4 cut(s)	144, 369, 525, 630
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	2 cut(s)	739, 962
SduI	GDGCHC	1 cut(s)	627
SetI	ASST	9 cut(s)	27, 187, 274, 317, 432, 598, 781, 817, 880
SfaNI	GCATC	1 cut(s)	762
SmiMI	CAYNNNNRTG	2 cut(s)	468, 647
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SphI	GCATGC	1 cut(s)	673
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	4 cut(s)	252, 383, 667, 682
SspMI	CTAG	1 cut(s)	233
StyI	CCWWGG	3 cut(s)	57, 648, 775
TaaI	ACNGT	4 cut(s)	243, 452, 496, 616
TaqI	TCGA	1 cut(s)	728
TasI	AATT	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	293, 764
TscAI	CASTG	3 cut(s)	361, 430, 625
TseFI	GTSAC	4 cut(s)	192, 425, 452, 479
TseI	GCWGC	3 cut(s)	69, 182, 638
Tsp45I	GTSAC	4 cut(s)	192, 425, 452, 479
TspDTI	ATGAA	1 cut(s)	823
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	3 cut(s)	361, 430, 625
Van91I	CCANNNNNTGG	1 cut(s)	963
VneI	GTGCAC	1 cut(s)	623
XceI	RCATGY	2 cut(s)	673, 825
XspI	CTAG	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.