Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

22515624 .. 22517911

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCCTCGTTCACTTCTCCTCCTCCTCATCCTCCTCTCCCTCGCCGTCGCCGCCTCCGCCCACAGCGGCCACGGCGACGAAGACGAGGAGCCAACTGCAGCAGAAAGCAACAACCTCCGAGCTAGGCCTCTGATTCTGACAAAGATCTGGTGTTTGATAGTTATCTTTTTCGGGACATTCATCCCTGGAGTTTCGCCTTACTTCTTGGAATGGAATCAGGGTTTCTTGGTTCTTGGGACCCAGTTTGCTGGAGGCGTGTTTCTCGGGACAGCTTTGATGCATTTTCTGAGTGATGCTGATGAGACTTTTAAGGACTTGACTGAGAAAGTGTACCCTTTTGCCTTCATGTTGGCTTGTGCTGGGTTCTTGATGACAATGCTAGCTGATTGTGTCATTTCCTATGTGTTTTCCAAGAAGAGGGATGGTGGCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTGAACATGAACAAGGCGTAACAGCATCACAGTTCCAGAGTCATAACCACTTTGTAAATGCATCTGTCGCAAATGTAAGTTCACTTGGGGATAGTGTCTTGTTGATTGTAGCCTTGTGTTTCCACTCAGTCTTTGAGGGCATTGCGATTGGAGTTACTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACGATTTCTCTGCACAAGGTATTTGCAGCCATTGCAATGGGAATTGCTCTTCTTCGTATGATGCCTAACCGTCCCTTCCTATCATGCGCTGCCTATGCTTTTGCATTTGCTTCTTCAAGTCCTATTGGTGTGGCCATTGGAATCATAATAGACGCAACAACCCAAGGTGCTGTGGCAGATTGGATATTTGCTATTTCAATGGGTCTGGCATGTGGAGTGTTTATCTATGTAGCTGTAAACCATTTGTTGGCCAAGGGTTACACACCTGATAAGCCAGTTTCTCTGGACAAATCCCATTACAAGTTTTTGGCAGTGTTGTTAGGTGTTGGCGTTATAGCTGTTGTGATGATCTGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

338

Amino Acids

36.2

Weight (kDa)

5.5

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	46 - 332	4.2e-53	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	898
AciI	CCGC	3 cut(s)	51, 57, 66
AcoI	YGGCCR	3 cut(s)	67, 783, 900
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	417, 898
AgsI	TTSAA	3 cut(s)	464, 768, 849
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	6 cut(s)	122, 272, 383, 629, 884, 989
AluI	AGCT	6 cut(s)	122, 272, 383, 629, 884, 989
Alw26I	GTCTC	3 cut(s)	296, 440, 614
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	4 cut(s)	67, 125, 783, 900
ApeKI	GCWGC	3 cut(s)	98, 677, 740
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	237
AsuNHI	GCTAGC	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	237
BalI	TGGCCA	2 cut(s)	785, 902
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	110, 689, 727
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	2 cut(s)	29, 88
BcgI	CGANNNNNNTGC	2 cut(s)	643, 677
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	296, 440, 614
BfaI	CTAG	2 cut(s)	123, 380
BfmI	CTRYAG	1 cut(s)	96
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	5 cut(s)	51, 67, 99, 678, 741
BlsI	GCNGC	5 cut(s)	52, 68, 100, 679, 742
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	3 cut(s)	90, 238, 239
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	6 cut(s)	267, 283, 494, 530, 622, 702
BmtI	GCTAGC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	207, 270
BpuEI	CTTGAG	2 cut(s)	435, 464
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	4 cut(s)	70, 184, 814, 903
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 898
Bse1I	ACTGG	2 cut(s)	241, 926
Bse3DI	GCAATG	3 cut(s)	600, 681, 693
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	70, 184, 814, 903
BseGI	GGATG	3 cut(s)	27, 180, 427
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	417, 898
BseMI	GCAATG	3 cut(s)	600, 681, 693
BseMII	CTCAG	4 cut(s)	278, 312, 600, 609
BseNI	ACTGG	2 cut(s)	241, 926
BseRI	GAGGAG	5 cut(s)	8, 11, 14, 23, 101
BseXI	GCAGC	3 cut(s)	110, 689, 727
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	4 cut(s)	69, 127, 785, 902
BsiHKCI	CYCGRG	1 cut(s)	263
BslFI	GGGAC	4 cut(s)	187, 250, 280, 708
BslI	CCNNNNNNNGG	2 cut(s)	417, 898
BsmAI	GTCTC	3 cut(s)	296, 440, 614
BsmFI	GGGAC	4 cut(s)	187, 250, 280, 708
BsnI	GGCC	4 cut(s)	69, 127, 785, 902
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	144, 439, 999
BspACI	CCGC	3 cut(s)	51, 57, 66
BspANI	GGCC	4 cut(s)	69, 127, 785, 902
BspCNI	CTCAG	4 cut(s)	279, 313, 599, 610
BspLI	GGNNCC	3 cut(s)	90, 238, 239
BspMAI	CTGCAG	1 cut(s)	100
BspOI	GCTAGC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	705
BsrDI	GCAATG	3 cut(s)	600, 681, 693
BsrI	ACTGG	2 cut(s)	241, 926
BssECI	CCNNGG	4 cut(s)	70, 184, 814, 903
BssMI	GATC	3 cut(s)	144, 439, 999
BssT1I	CCWWGG	2 cut(s)	814, 903
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	492, 722
Bst6I	CTCTTC	2 cut(s)	410, 705
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	287, 321, 586, 618
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	3 cut(s)	27, 180, 427
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	3 cut(s)	147, 442, 1002
BstMAI	GTCTC	3 cut(s)	296, 440, 614
BstMBI	GATC	3 cut(s)	144, 439, 999
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 56, 72, 527, 641, 683, 746
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	864
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	110, 689, 727
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	144
BstXI	CCANNNNNNTGG	2 cut(s)	248, 688
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	4 cut(s)	69, 127, 785, 902
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	27, 180, 427
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	1 cut(s)	969
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	740
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	4 cut(s)	346, 467, 735, 861
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	4 cut(s)	287, 321, 586, 618
DpnI	GATC	3 cut(s)	146, 441, 1001
DpnII	GATC	3 cut(s)	144, 439, 999
EaeI	YGGCCR	3 cut(s)	67, 783, 900
Eam1104I	CTCTTC	2 cut(s)	410, 705
EarI	CTCTTC	2 cut(s)	410, 705
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	814, 903
Eco147I	AGGCCT	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	814, 903
EcoT22I	ATGCAT	2 cut(s)	282, 523
ErhI	CCWWGG	2 cut(s)	814, 903
FaeI	CATG	4 cut(s)	349, 470, 738, 864
FaqI	GGGAC	4 cut(s)	187, 250, 280, 708
FatI	CATG	4 cut(s)	345, 466, 734, 860
Fnu4HI	GCNGC	5 cut(s)	51, 67, 99, 678, 741
FokI	GGATG	3 cut(s)	14, 167, 434
Fsp4HI	GCNGC	5 cut(s)	51, 67, 99, 678, 741
FspBI	CTAG	2 cut(s)	123, 380
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	5 cut(s)	51, 67, 99, 678, 741
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	207, 270
HaeIII	GGCC	4 cut(s)	69, 127, 785, 902
HgaI	GACGC	1 cut(s)	812
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	4 cut(s)	349, 470, 738, 864
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HinfI	GANTC	5 cut(s)	133, 214, 448, 499, 792
Hpy166II	GTNNAC	4 cut(s)	11, 331, 542, 889
Hpy188I	TCNGA	5 cut(s)	119, 132, 138, 288, 439
Hpy188III	TCNNGA	6 cut(s)	172, 265, 367, 443, 496, 935
Hpy8I	GTNNAC	4 cut(s)	11, 331, 542, 889
Hpy99I	CGWCG	2 cut(s)	50, 80
HpyAV	CCTTC	2 cut(s)	352, 736
HpyCH4III	ACNGT	2 cut(s)	492, 722
HpyCH4V	TGCA	7 cut(s)	98, 280, 521, 664, 677, 686, 755
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 56, 72, 527, 641, 683, 746
HpyF3I	CTNAG	4 cut(s)	287, 321, 586, 618
Hsp92II	CATG	4 cut(s)	349, 470, 738, 864
HspAI	GCGC	1 cut(s)	738
KflI	GGGWCCC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	144, 439, 999
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	3 cut(s)	110, 689, 727
LweI	GCATC	6 cut(s)	267, 283, 494, 530, 622, 702
MaeI	CTAG	2 cut(s)	123, 380
MaeIII	GTNAC	3 cut(s)	478, 613, 908
MalI	GATC	3 cut(s)	146, 441, 1001
MboI	GATC	3 cut(s)	144, 439, 999
MboII	GAAGA	5 cut(s)	92, 427, 692, 695, 756
MflI	RGATCY	1 cut(s)	144
MlsI	TGGCCA	2 cut(s)	785, 902
MluCI	AATT	1 cut(s)	693
MluNI	TGGCCA	2 cut(s)	785, 902
MlyI	GAGTC	2 cut(s)	442, 508
Mox20I	TGGCCA	2 cut(s)	785, 902
Mph1103I	ATGCAT	2 cut(s)	282, 523
MscI	TGGCCA	2 cut(s)	785, 902
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	686
Msp20I	TGGCCA	2 cut(s)	785, 902
MspA1I	CMGCKG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	7 cut(s)	50, 56, 72, 527, 641, 683, 746
NdeII	GATC	3 cut(s)	144, 439, 999
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	349, 470, 738, 864
NlaIV	GGNNCC	3 cut(s)	90, 238, 239
NsiI	ATGCAT	2 cut(s)	282, 523
NspI	RCATGY	1 cut(s)	864
PceI	AGGCCT	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	705
PfeI	GAWTC	3 cut(s)	133, 214, 792
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	5 cut(s)	52, 68, 100, 679, 742
PleI	GAGTC	2 cut(s)	442, 507
PpsI	GAGTC	2 cut(s)	442, 507
PpuMI	RGGWCCY	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	90, 238, 239
PspPI	GGNCC	1 cut(s)	237
PspPPI	RGGWCCY	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	686
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	5 cut(s)	51, 67, 99, 678, 741
Sau3AI	GATC	3 cut(s)	144, 439, 999
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	2 cut(s)	442, 508
ScrFI	CCNGG	1 cut(s)	186
SfaNI	GCATC	6 cut(s)	267, 283, 494, 530, 622, 702
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	443, 450
SmoI	CTYRAG	2 cut(s)	443, 450
Sse9I	AATT	1 cut(s)	693
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	3 cut(s)	51, 57, 66
SspMI	CTAG	2 cut(s)	123, 380
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	2 cut(s)	814, 903
TaaI	ACNGT	2 cut(s)	492, 722
TasI	AATT	1 cut(s)	693
TauI	GCSGC	2 cut(s)	53, 69
TfiI	GAWTC	3 cut(s)	133, 214, 792
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	969
TseI	GCWGC	3 cut(s)	98, 677, 740
TspDTI	ATGAA	3 cut(s)	169, 334, 483
TspRI	CASTG	1 cut(s)	969
Van91I	CCANNNNNTGG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	237
XceI	RCATGY	1 cut(s)	864
XspI	CTAG	2 cut(s)	123, 380
Zsp2I	ATGCAT	2 cut(s)	282, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.