Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00066

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

32791 .. 34255

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTTGCTGTAATAATCTTATTTTCCTCTCTCTCTTCCTCTGCCTCACCTTCTCTTCCTTAGCCTACAGCAACAACAACGACAATGAAACCAAAAATGGAAATGGTGCTCACAACCTTCGGTCCAAGTCTCTAGTCCTGGTCAAGATATGGTGCTTGCTGTTGGTCTTTGTTGGGACTTTTGCAGCAGGAATGTCACCTTACTTCTTAAGGTGGAACGAGGCATTCTTGGTTCTAGGCACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAGACAGGACTTTTCAGGGCTTAACTGAAAAGGAGTACCCTTTTGCCTATATGCTGGCATGTATGGGGTTCTTGATCACTATGCTTGCTGATTGTGTTGTTTCTTATGTGTATGGTAAGCAGGAGGGTAGTACTACTGACCCAGAAGGCCATGATACTCACCACATTGCAGCGGTTGGTTCATTCAGGGACACAATTCTGTTGATCGTAGCCTTGTGCTTCCACTCTTTCTTTGAGGGGATTGCAATTGGGATTGCCAAGACAAAACTGGATGCTTGGAAAGCCTTGTGGACAGTGTGTGTGCACAAAATCATTGCAGCTATTGCCATGAGCATTGCCCTTCTTCGCATGATTCCACATCGGCCATTCATATCATGCATGGCATATGCTTTTGTATTTGCCATTTCCAGTCCAGTTGGTGTAGGAGTTGGGATCATAATAGACGCCAAAACCCAAGGTGCCACAGCAGATTGGATGTTTGCTATTTCTACAGCTTTGGCTTGTGGGTGTTACACAGCTCAAAATGCAGTCTCTGTTGATAAACCCCACTACAAGTTTTTGGCTGTTGTTTTTGGTGTTGGGGTGATCTCTGTTGCCATGATCTGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

302

Amino Acids

32.87

Weight (kDa)

6.73

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	47 - 154	4.3e-18	ZIP Zinc transporter
Zip	PF02535	151 - 297	1.6e-20	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	755
AccB7I	CCANNNNNTGG	1 cut(s)	900
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	737
AcoI	YGGCCR	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	2 cut(s)	335, 430
AfiI	CCNNNNNNNGG	1 cut(s)	900
AflII	CTTAAG	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	4 cut(s)	275, 617, 791, 815
AluI	AGCT	4 cut(s)	275, 617, 791, 815
Alw21I	GWGCWC	2 cut(s)	112, 603
Alw26I	GTCTC	2 cut(s)	135, 832
Alw44I	GTGCAC	1 cut(s)	599
AlwI	GGATC	1 cut(s)	737
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	2 cut(s)	445, 659
ApaLI	GTGCAC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	185, 467, 614
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	40, 189, 449, 892
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	755
Bbv12I	GWGCWC	2 cut(s)	112, 603
BbvI	GCAGC	3 cut(s)	197, 479, 626
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	135, 832
BfaI	CTAG	2 cut(s)	134, 236
BfmI	CTRYAG	2 cut(s)	67, 786
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	3 cut(s)	186, 468, 615
BlsI	GCNGC	3 cut(s)	187, 469, 616
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	559
Bpu10I	CCTNAGC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	1 cut(s)	900
Bse1I	ACTGG	3 cut(s)	570, 705, 710
Bse3DI	GCAATG	3 cut(s)	462, 609, 630
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	2 cut(s)	574, 777
BseLI	CCNNNNNNNGG	1 cut(s)	900
BseMI	GCAATG	3 cut(s)	462, 609, 630
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	3 cut(s)	570, 705, 710
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	197, 479, 626
BshFI	GGCC	2 cut(s)	447, 661
BshNI	GGYRCC	1 cut(s)	755
BsiHKAI	GWGCWC	2 cut(s)	112, 603
BslFI	GGGAC	2 cut(s)	190, 500
BslI	CCNNNNNNNGG	1 cut(s)	900
BsmAI	GTCTC	2 cut(s)	135, 832
BsmFI	GGGAC	2 cut(s)	190, 500
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	447, 661
Bsp1286I	GDGCHC	2 cut(s)	112, 603
Bsp143I	GATC	5 cut(s)	372, 501, 729, 882, 897
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	2 cut(s)	447, 661
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	757
BspPI	GGATC	1 cut(s)	737
BspT107I	GGYRCC	1 cut(s)	755
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	3 cut(s)	462, 609, 630
BsrI	ACTGG	3 cut(s)	570, 705, 710
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	5 cut(s)	372, 501, 729, 882, 897
BssNI	GRCGYC	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	751
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	246, 592
Bst6I	CTCTTC	2 cut(s)	41, 61
BstACI	GRCGYC	1 cut(s)	741
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	7, 158, 354, 384
BstDEI	CTNAG	2 cut(s)	61, 290
BstF5I	GGATG	2 cut(s)	574, 777
BstKTI	GATC	5 cut(s)	375, 504, 732, 885, 900
BstMAI	GTCTC	2 cut(s)	135, 832
BstMBI	GATC	5 cut(s)	372, 501, 729, 882, 897
BstMWI	GCNNNNNNNGC	3 cut(s)	578, 620, 821
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	67, 786
BstSLI	GKGCMC	1 cut(s)	603
BstV1I	GCAGC	3 cut(s)	197, 479, 626
BsuRI	GGCC	2 cut(s)	447, 661
BtsCI	GGATG	2 cut(s)	574, 777
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	4 cut(s)	7, 158, 354, 384
CaiI	CAGNNNCTG	1 cut(s)	830
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	2 cut(s)	334, 429
CviAII	CATG	8 cut(s)	280, 357, 449, 625, 646, 672, 676, 895
CviQI	GTAC	2 cut(s)	334, 429
DdeI	CTNAG	2 cut(s)	61, 290
DpnI	GATC	5 cut(s)	374, 503, 731, 884, 899
DpnII	GATC	5 cut(s)	372, 501, 729, 882, 897
EaeI	YGGCCR	1 cut(s)	659
Eam1104I	CTCTTC	2 cut(s)	41, 61
EarI	CTCTTC	2 cut(s)	41, 61
Eco130I	CCWWGG	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	751
EcoT22I	ATGCAT	1 cut(s)	677
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	8 cut(s)	283, 360, 452, 628, 649, 675, 679, 898
FaqI	GGGAC	2 cut(s)	190, 500
FatI	CATG	8 cut(s)	279, 356, 448, 624, 645, 671, 675, 894
FauNDI	CATATG	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	186, 468, 615
FokI	GGATG	2 cut(s)	581, 784
Fsp4HI	GCNGC	3 cut(s)	186, 468, 615
FspBI	CTAG	2 cut(s)	134, 236
GluI	GCNGC	3 cut(s)	186, 468, 615
HaeIII	GGCC	2 cut(s)	447, 661
HgaI	GACGC	1 cut(s)	749
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	8 cut(s)	283, 360, 452, 628, 649, 675, 679, 898
HinfI	GANTC	2 cut(s)	296, 649
HphI	GGTGA	4 cut(s)	40, 189, 449, 892
Hpy166II	GTNNAC	2 cut(s)	588, 601
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	145, 289, 370
Hpy8I	GTNNAC	2 cut(s)	588, 601
HpyAV	CCTTC	4 cut(s)	61, 128, 437, 647
HpyCH4III	ACNGT	2 cut(s)	246, 592
HpyCH4V	TGCA	8 cut(s)	185, 283, 467, 542, 601, 614, 675, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	578, 620, 821
HpyF3I	CTNAG	2 cut(s)	61, 290
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	8 cut(s)	283, 360, 452, 628, 649, 675, 679, 898
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	372, 501, 729, 882, 897
Lsp1109I	GCAGC	3 cut(s)	197, 479, 626
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	2 cut(s)	134, 236
MaeIII	GTNAC	2 cut(s)	195, 806
MalI	GATC	5 cut(s)	374, 503, 731, 884, 899
MboI	GATC	5 cut(s)	372, 501, 729, 882, 897
MboII	GAAGA	3 cut(s)	28, 48, 632
MfeI	CAATTG	1 cut(s)	543
MhlI	GDGCHC	2 cut(s)	112, 603
MluCI	AATT	2 cut(s)	492, 543
MnlI	CCTC	6 cut(s)	38, 50, 56, 214, 415, 526
Mph1103I	ATGCAT	1 cut(s)	677
MseI	TTAA	2 cut(s)	209, 320
MspA1I	CMGCKG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	578, 620, 821
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	5 cut(s)	372, 501, 729, 882, 897
NlaIII	CATG	8 cut(s)	283, 360, 452, 628, 649, 675, 679, 898
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	1 cut(s)	195
NsiI	ATGCAT	1 cut(s)	677
NspI	RCATGY	1 cut(s)	360
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	296, 649
PflMI	CCANNNNNTGG	1 cut(s)	900
PkrI	GCNGC	3 cut(s)	187, 469, 616
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	335, 430
RsaNI	GTAC	2 cut(s)	334, 429
SaqAI	TTAA	2 cut(s)	209, 320
SatI	GCNGC	3 cut(s)	186, 468, 615
Sau3AI	GATC	5 cut(s)	372, 501, 729, 882, 897
Sau96I	GGNCC	1 cut(s)	123
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	112, 603
SetI	ASST	9 cut(s)	53, 120, 202, 215, 277, 619, 757, 793, 817
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	67, 786
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	2 cut(s)	492, 543
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	2 cut(s)	134, 236
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	2 cut(s)	246, 592
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	492, 543
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	296, 649
Tru1I	TTAA	2 cut(s)	209, 320
Tru9I	TTAA	2 cut(s)	209, 320
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	3 cut(s)	185, 467, 614
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	3 cut(s)	102, 468, 655
TspRI	CASTG	1 cut(s)	597
Van91I	CCANNNNNTGG	1 cut(s)	900
Vha464I	CTTAAG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XspI	CTAG	2 cut(s)	134, 236
ZrmI	AGTACT	1 cut(s)	430
Zsp2I	ATGCAT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.