Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

29200824 .. 29201402

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1201500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTAGATTGTCTAGGCCATGATGTTCATGGTGACCACCCTGCAACAGTTGGTTCAGTTGGGGATAGCATCTTGTTGATCGTAGCCTTGTGTTTCCACTCTTTCTTTGAGGGTATCGCAATCGGAGTTGCCAGCACGAAAGCTGAAGCTTGGAAGGCTCTGTGGACAGTCAGTCTGCACAAAATCTTTGCAGCCATTGCCATGGCCATTGCTCTCCTCCGAATGATTCCAGACCGTCCCTTCTTATCATGCACAGCATATGCTTTTCTGTTTGCCATTTCCAGTCCAATTGGTATCGGAGTTGGGATCACGATAGATGCCACAACTCAAGGTAGAACGGCAGATTGGATCTCTGCCATATCGATAGGTCTGGCATGCGGCGTGTTCATATATGTATCCATAAACCATCTGCTTTCAAAGGGTTATACAGTTCACAAGGCAGTCTCTGTTGACACTCCCCACTACAAGTTTTTGGCTGTGTTGTTTGGAATCGGAGTAGTATCAGTTGTCATGATCTGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

176

Amino Acids

18.62

Weight (kDa)

6.41

Isoelectric Point (pI)

24.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	22 - 170	2.3e-33	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	2 cut(s)	314, 356
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	417
AhdI	GACNNNNNGTC	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	2 cut(s)	143, 149
AluI	AGCT	2 cut(s)	143, 149
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	314, 356
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	16, 204
ApeKI	GCWGC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	192, 379
BlsI	GCNGC	2 cut(s)	193, 380
BmeRI	GACNNNNNGTC	1 cut(s)	171
BmsI	GCATC	2 cut(s)	78, 307
BpuEI	CTTGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	2 cut(s)	195, 207
BseCI	ATCGAT	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	201
BseMI	GCAATG	2 cut(s)	195, 207
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	18, 206
BshVI	ATCGAT	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	18, 206
Bsp143I	GATC	4 cut(s)	78, 306, 348, 513
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	2 cut(s)	18, 206
BspDI	ATCGAT	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	510
BspPI	GGATC	2 cut(s)	314, 356
BsrDI	GCAATG	2 cut(s)	195, 207
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	4 cut(s)	78, 306, 348, 513
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	4 cut(s)	49, 169, 236, 430
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	133, 376
BstDSI	CCRYGG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	81, 309, 351, 516
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	4 cut(s)	78, 306, 348, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 197
BstNSI	RCATGY	1 cut(s)	378
BstPI	GGTNACC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	18, 206
BsuTUI	ATCGAT	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	133, 376
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	510
ClaI	ATCGAT	1 cut(s)	362
CviAII	CATG	6 cut(s)	20, 29, 202, 249, 375, 511
CviJI	RGCY	8 cut(s)	18, 86, 143, 149, 158, 194, 206, 476
CviKI_1	RGCY	8 cut(s)	18, 86, 143, 149, 158, 194, 206, 476
DpnI	GATC	4 cut(s)	80, 308, 350, 515
DpnII	GATC	4 cut(s)	78, 306, 348, 513
DriI	GACNNNNNGTC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	165
Eco91I	GGTNACC	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	6 cut(s)	23, 32, 205, 252, 378, 514
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	6 cut(s)	19, 28, 201, 248, 374, 510
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	192, 379
Fsp4HI	GCNGC	2 cut(s)	192, 379
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	2 cut(s)	192, 379
HaeIII	GGCC	2 cut(s)	18, 206
Hin1II	CATG	6 cut(s)	23, 32, 205, 252, 378, 514
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	2 cut(s)	226, 489
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	3 cut(s)	165, 433, 451
Hpy188I	TCNGA	4 cut(s)	125, 221, 299, 494
Hpy188III	TCNNGA	3 cut(s)	230, 310, 511
Hpy8I	GTNNAC	3 cut(s)	165, 433, 451
HpyAV	CCTTC	2 cut(s)	148, 250
HpyCH4III	ACNGT	4 cut(s)	49, 169, 236, 430
HpyCH4V	TGCA	4 cut(s)	44, 178, 191, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 197
Hsp92II	CATG	6 cut(s)	23, 32, 205, 252, 378, 514
Kzo9I	GATC	4 cut(s)	78, 306, 348, 513
LpnPI	CCDG	6 cut(s)	54, 145, 243, 295, 356, 502
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	2 cut(s)	78, 307
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	4 cut(s)	80, 308, 350, 515
MboI	GATC	4 cut(s)	78, 306, 348, 513
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	206
MnlI	CCTC	2 cut(s)	103, 227
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	206
MunI	CAATTG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	155, 197
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	78, 306, 348, 513
NlaIII	CATG	6 cut(s)	23, 32, 205, 252, 378, 514
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	378
PagI	TCATGA	1 cut(s)	510
PfeI	GAWTC	2 cut(s)	226, 489
PkrI	GCNGC	2 cut(s)	193, 380
PspEI	GGTNACC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	200
SatI	GCNGC	2 cut(s)	192, 379
Sau3AI	GATC	4 cut(s)	78, 306, 348, 513
SetI	ASST	4 cut(s)	145, 151, 334, 370
SfaNI	GCATC	2 cut(s)	78, 307
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SphI	GCATGC	1 cut(s)	378
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	49, 169, 236, 430
TaqI	TCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	226, 489
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	17, 376
XceI	RCATGY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.