Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

58483654 .. 58485695

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG353700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTCGACCACTCCTCCTCCTCCTCCTCCTCCTCCACCTCATCCTCCTCTCCCTCGCCCTCGCCGCCTCCGCCCACAGCGGCCACGGCGATGAAGACGAGGAACCAACTACCGCAGACGACACTGACCTCCGCGCCAGGCCTCTGATCATGGCAAAGATTTGGTGTTTGATAGTTATCTTCTTCGGAACTTTCATCCCTGGAGTTTCCCCTTACTTCTTCAAATGGAATCAGGGTTTCTTGGTTCTGGGGACCCAGTTTGCTGGGGGCGTGTTTCTGGGGACGGCTCTGATGCATTTTCTGAGTGACGCTGATGAGACTTTTAAGGACTTGACTAAAAAAGAGTACCCTTTTGCGTTCATGTTGGCTTGTGCTGGGTTCTTGTTGACAATGCTGGCTGACTGTGTCATTTCCTATGTGTTTTCCAAGAAAAGGGACGCTGGCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTGAACATGAAAAAGGCGTCACAGCATCACAGTGTCAGAGCCATAACCACTTTGCAAACGCATCTGTCGCAAATGTTAGTTCACTTGGGGATAGTGTCCTGTTGATAGTAGCCTTGTGTTTTCACTCTGTCTTTGAGGGCATTGCAATTGGAGTTGCTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACAATTTCTCTGCATAAGGTATTTGCAGCTATTGCCATGGGAATTGCTCTTCTGCGAATGATGCCTAACCGTCCCTTCTTATCATGCGCTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGCGTGGCCATTGGAATCATAATAGACGCAACAACCCAAGGTGCTGTGGCAGATTGGATATTTGCGATTTCAATGGGTCTGGCATGTGGTGTGTTTATCTATGTAGCTGTAAACCATTTATTGGCAAAGGGTTACACACCCGATAAGGTAGTTTCTGTGGACAAACCCCATTACAAGTTTTTGGCAGTGTCGTTGGGCGTTGGCGTTATAGCTGTTGTGATGATTTGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

342

Amino Acids

36.76

Weight (kDa)

5.84

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	52 - 337	7.3e-53	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	913
AccII	CGCG	1 cut(s)	135
AciI	CCGC	5 cut(s)	66, 72, 81, 114, 133
AcoI	YGGCCR	2 cut(s)	82, 798
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	432, 913
AgsI	TTSAA	4 cut(s)	223, 479, 783, 864
AjnI	CCWGG	2 cut(s)	137, 199
AluBI	AGCT	4 cut(s)	644, 695, 899, 1004
AluI	AGCT	4 cut(s)	644, 695, 899, 1004
Alw26I	GTCTC	3 cut(s)	311, 455, 629
AoxI	GGCC	3 cut(s)	82, 140, 798
ApeKI	GCWGC	2 cut(s)	692, 755
AspLEI	GCGC	2 cut(s)	137, 755
AspS9I	GGNCC	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	704, 742
BceAI	ACGGC	2 cut(s)	103, 300
BciT130I	CCWGG	2 cut(s)	139, 201
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	311, 455, 629
BisI	GCNGC	4 cut(s)	66, 82, 693, 756
BlsI	GCNGC	4 cut(s)	67, 83, 694, 757
Bme1390I	CCNGG	2 cut(s)	139, 201
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	3 cut(s)	105, 253, 254
BmrFI	CCNGG	2 cut(s)	139, 201
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	5 cut(s)	282, 509, 545, 637, 717
BmuI	ACTGGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	450, 479
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	85, 199, 702, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 33
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 913
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	139, 201
BseDI	CCNNGG	4 cut(s)	85, 199, 702, 829
BseGI	GGATG	2 cut(s)	42, 195
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	432, 913
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	293, 624
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	8 cut(s)	5, 8, 11, 14, 17, 20, 23, 38
BseXI	GCAGC	2 cut(s)	704, 742
BseYI	CCCAGC	2 cut(s)	263, 374
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	84, 142, 800
BslFI	GGGAC	4 cut(s)	265, 295, 449, 723
BslI	CCNNNNNNNGG	2 cut(s)	432, 913
BsmAI	GTCTC	3 cut(s)	311, 455, 629
BsmFI	GGGAC	4 cut(s)	265, 295, 449, 723
BsnI	GGCC	3 cut(s)	84, 142, 800
Bsp143I	GATC	2 cut(s)	147, 454
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	5 cut(s)	66, 72, 81, 114, 133
BspANI	GGCC	3 cut(s)	84, 142, 800
BspCNI	CTCAG	2 cut(s)	294, 625
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	105, 253, 254
BspQI	GCTCTTC	1 cut(s)	720
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	85, 199, 702, 829
BssMI	GATC	2 cut(s)	147, 454
BssNI	GRCGYC	1 cut(s)	492
BssT1I	CCWWGG	2 cut(s)	702, 829
Bst2UI	CCWGG	2 cut(s)	139, 201
Bst4CI	ACNGT	3 cut(s)	404, 507, 737
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	492
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	396, 442
BstDEI	CTNAG	2 cut(s)	302, 633
BstDSI	CCRYGG	2 cut(s)	85, 702
BstF5I	GGATG	2 cut(s)	42, 195
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	137, 755
BstKTI	GATC	2 cut(s)	150, 457
BstMAI	GTCTC	3 cut(s)	311, 455, 629
BstMBI	GATC	2 cut(s)	147, 454
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 71, 87, 542, 656, 698, 727, 761
BstNI	CCWGG	2 cut(s)	139, 201
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	2 cut(s)	137, 199
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	704, 742
BstV2I	GAAGAC	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	84, 142, 800
BtgI	CCRYGG	2 cut(s)	85, 702
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	42, 195
BtsI	GCAGTG	1 cut(s)	984
BtsIMutI	CAGTG	3 cut(s)	123, 512, 984
Cac8I	GCNNGC	2 cut(s)	396, 442
CfoI	GCGC	2 cut(s)	137, 755
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	4 cut(s)	317, 446, 481, 827
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	6 cut(s)	151, 361, 482, 703, 750, 876
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	302, 633
DpnI	GATC	2 cut(s)	149, 456
DpnII	GATC	2 cut(s)	147, 454
EaeI	YGGCCR	2 cut(s)	82, 798
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	702, 829
Eco147I	AGGCCT	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	137, 199
EcoT14I	CCWWGG	2 cut(s)	702, 829
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	702, 829
FaeI	CATG	6 cut(s)	154, 364, 485, 706, 753, 879
FaqI	GGGAC	4 cut(s)	265, 295, 449, 723
FatI	CATG	6 cut(s)	150, 360, 481, 702, 749, 875
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	66, 82, 693, 756
FokI	GGATG	2 cut(s)	29, 182
Fsp4HI	GCNGC	4 cut(s)	66, 82, 693, 756
GlaI	GCGC	2 cut(s)	136, 754
GluI	GCNGC	4 cut(s)	66, 82, 693, 756
GsaI	CCCAGC	2 cut(s)	267, 378
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	84, 142, 800
HgaI	GACGC	4 cut(s)	317, 446, 481, 827
HhaI	GCGC	2 cut(s)	137, 755
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	6 cut(s)	154, 364, 485, 706, 753, 879
Hin6I	GCGC	2 cut(s)	135, 753
HinP1I	GCGC	2 cut(s)	135, 753
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	3 cut(s)	229, 463, 807
Hpy166II	GTNNAC	4 cut(s)	387, 557, 904, 952
Hpy188I	TCNGA	6 cut(s)	147, 188, 291, 303, 454, 513
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	4 cut(s)	387, 557, 904, 952
HpyAV	CCTTC	1 cut(s)	751
HpyCH4III	ACNGT	3 cut(s)	404, 507, 737
HpyCH4V	TGCA	6 cut(s)	295, 530, 620, 679, 692, 770
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 71, 87, 542, 656, 698, 727, 761
HpyF3I	CTNAG	2 cut(s)	302, 633
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	154, 364, 485, 706, 753, 879
HspAI	GCGC	2 cut(s)	135, 753
KflI	GGGWCCC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	147, 454
LguI	GCTCTTC	1 cut(s)	720
Lsp1109I	GCAGC	2 cut(s)	704, 742
LweI	GCATC	5 cut(s)	282, 509, 545, 637, 717
MaeIII	GTNAC	3 cut(s)	305, 493, 923
MalI	GATC	2 cut(s)	149, 456
MboI	GATC	2 cut(s)	147, 454
MboII	GAAGA	5 cut(s)	107, 172, 175, 211, 707
MfeI	CAATTG	1 cut(s)	621
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	3 cut(s)	621, 669, 708
MluNI	TGGCCA	1 cut(s)	800
MlyI	GAGTC	1 cut(s)	457
Mox20I	TGGCCA	1 cut(s)	800
Mph1103I	ATGCAT	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	90, 505
Msp20I	TGGCCA	1 cut(s)	800
MspA1I	CMGCKG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	139, 201
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	2 cut(s)	139, 201
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	8 cut(s)	65, 71, 87, 542, 656, 698, 727, 761
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	2 cut(s)	147, 454
NlaIII	CATG	6 cut(s)	154, 364, 485, 706, 753, 879
NlaIV	GGNNCC	3 cut(s)	105, 253, 254
NmuCI	GTSAC	2 cut(s)	305, 493
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	879
PceI	AGGCCT	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	229, 807
PflFI	GACNNNGTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	913
PkrI	GCNGC	4 cut(s)	67, 83, 694, 757
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	137, 199
PspFI	CCCAGC	2 cut(s)	263, 374
PspGI	CCWGG	2 cut(s)	137, 199
PspN4I	GGNNCC	3 cut(s)	105, 253, 254
PspPI	GGNCC	1 cut(s)	252
PspPPI	RGGWCCY	1 cut(s)	252
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	90, 505
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	66, 82, 693, 756
Sau3AI	GATC	2 cut(s)	147, 454
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	139, 201
SetI	ASST	9 cut(s)	42, 132, 646, 687, 697, 835, 901, 942, 1006
SfaNI	GCATC	5 cut(s)	282, 509, 545, 637, 717
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	90, 505
SmlI	CTYRAG	2 cut(s)	458, 465
SmoI	CTYRAG	2 cut(s)	458, 465
Sse9I	AATT	3 cut(s)	621, 669, 708
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	5 cut(s)	66, 72, 81, 114, 133
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	137, 199
StyI	CCWWGG	2 cut(s)	702, 829
TaaI	ACNGT	3 cut(s)	404, 507, 737
TaqI	TCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	621, 669, 708
TauI	GCSGC	2 cut(s)	68, 84
TfiI	GAWTC	2 cut(s)	229, 807
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	3 cut(s)	130, 512, 984
TseFI	GTSAC	2 cut(s)	305, 493
TseI	GCWGC	2 cut(s)	692, 755
Tsp45I	GTSAC	2 cut(s)	305, 493
TspDTI	ATGAA	4 cut(s)	108, 184, 349, 498
TspRI	CASTG	3 cut(s)	130, 512, 984
Tth111I	GACNNNGTC	1 cut(s)	404
Van91I	CCANNNNNTGG	1 cut(s)	913
VpaK11BI	GGWCC	1 cut(s)	252
XceI	RCATGY	1 cut(s)	879
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.