Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

33687182 .. 33687625

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTGCCAGAGAAGAATGGCTTGCTACAATAATCATCTCTTCCTTTCCCTCTTCCTTTGCCTCACCCTCTCTTCCTTAGCCTACAGCAACCACGGCGAGGGTGAAACTGAAGAACACAATGGTGTTCACTACCTTCGATCTAAGCCTCTTATCCTGGTCAAGATTTGGTGCCTGGTGTTGGTCTTTGTTGGGACTTTTGCAGCAGGAATGTCACCTTACTTCTTAAGGTGGAACGAGGCGTTCTTGGTTCTAGGCACACAGTCTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAAACAAGACTTTTGAGGGCTTGACTGAAAAGGAGTACCCTTTTGCCTGTATGCTGGCCTGTGTAGGGTTCTTGATCACAATGCTTGCAGATTGTGTGGTTTCATATGTCTATGCTAAGCAGAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

147

Amino Acids

16.47

Weight (kDa)

6.93

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	52 - 144	3.5e-15	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	97, 178, 378
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	315
AjnI	CCWGG	2 cut(s)	153, 171
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	55, 113, 204
BanI	GGYRCC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	155, 173
BclI	TGATCA	1 cut(s)	387
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	82
BfrI	CTTAAG	1 cut(s)	223
BisI	GCNGC	1 cut(s)	201
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	155, 173
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	155, 173
Bpu10I	CCTNAGC	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 178, 378
BseBI	CCWGG	2 cut(s)	155, 173
BseDI	CCNNGG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	97, 178, 378
BseMII	CTCAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	212
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	3 cut(s)	97, 178, 378
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	137, 387
Bsp1720I	GCTNAGC	1 cut(s)	429
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	137, 387
Bst2UI	CCWGG	2 cut(s)	155, 173
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	3 cut(s)	44, 56, 76
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	22, 369, 399
BstDEI	CTNAG	4 cut(s)	76, 141, 305, 429
BstDSI	CCRYGG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	140, 390
BstMBI	GATC	2 cut(s)	137, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	2 cut(s)	155, 173
BstSCI	CCNGG	2 cut(s)	153, 171
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	91
Cac8I	GCNNGC	3 cut(s)	22, 369, 399
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	6 cut(s)	20, 80, 145, 290, 333, 371
CviKI_1	RGCY	6 cut(s)	20, 80, 145, 290, 333, 371
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	76, 141, 305, 429
DpnI	GATC	2 cut(s)	139, 389
DpnII	GATC	2 cut(s)	137, 387
Eam1104I	CTCTTC	3 cut(s)	44, 56, 76
EarI	CTCTTC	3 cut(s)	44, 56, 76
Eco57I	CTGAAG	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	153, 171
FaeI	CATG	1 cut(s)	298
FaiI	YATR	6 cut(s)	296, 365, 418, 420, 426, 442
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	294
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	1 cut(s)	311
HphI	GGTGA	3 cut(s)	55, 113, 204
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	3 cut(s)	160, 304, 385
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	143, 430
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	200, 298, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	4 cut(s)	76, 141, 305, 429
Hsp92II	CATG	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	137, 387
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	2 cut(s)	139, 389
MboI	GATC	2 cut(s)	137, 387
MboII	GAAGA	5 cut(s)	24, 31, 43, 63, 122
MnlI	CCTC	7 cut(s)	59, 71, 77, 91, 156, 229, 322
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	155, 173
MvaI	CCWGG	2 cut(s)	155, 173
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	137, 387
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	153, 171
PspGI	CCWGG	2 cut(s)	153, 171
PspN4I	GGNNCC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	137, 387
ScrFI	CCNGG	2 cut(s)	155, 173
SetI	ASST	5 cut(s)	135, 217, 230, 292, 441
SfcI	CTRYAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	153, 171
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	405
Vha464I	CTTAAG	1 cut(s)	223
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.