Rh5BG365600

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002192
Physical Location & Seq
Forward (+)
57304963 .. 57330901
25939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG365600.1

Sequence Viewer

Length: 390 bp
ATGCCAAAGGTTGTGCCTTTACCATATTTGTTTGTGAAAGAATGCCTAATGAAGCATATGGAATGGAGCTCTTTGATGATTAGCAAGACTAGGTCTAAGCCTCTTATCCTGGTCAAGATTTGGTGCCTGGTGTTAGTCTTTGTTGGGACTTTTGCAGCAGGAATGTCACCTTACTTCTCAAGGTGGAATGAGGCGTTCTTGGTTCTAGGTACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAAACAAGACTTTTGAGGGCCTGACTGAAAAGAAGTACCATTTTGCCGATATGCTAGCCTGTGTAGGGTTCTTGATCACTATGCTTGCAGATTGTGTGGTTTCATATGTCTATGCTAAGTAG

Protein Analysis

129

Amino Acids

14.56

Weight (kDa)

8.93

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 37 - 129 6.2e-16 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AfaI GTAC 2 cut(s) 211, 305
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 1 cut(s) 270
AjnI CCWGG 2 cut(s) 108, 126
AluBI AGCT 2 cut(s) 69, 245
AluI AGCT 2 cut(s) 69, 245
Alw21I GWGCWC 1 cut(s) 71
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 159
AsuNHI GCTAGC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 167
BciT130I CCWGG 2 cut(s) 110, 128
BclI TGATCA 1 cut(s) 342
BfaI CTAG 3 cut(s) 90, 206, 323
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 110, 128
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 110, 128
BmtI GCTAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 333
BseBI CCWGG 2 cut(s) 110, 128
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 342
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 125
BspOI GCTAGC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 123
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 110, 128
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 324, 354
BstDEI CTNAG 3 cut(s) 96, 260, 384
BstKTI GATC 1 cut(s) 345
BstMBI GATC 1 cut(s) 342
BstNI CCWGG 2 cut(s) 110, 128
BstSCI CCNGG 2 cut(s) 108, 126
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 324, 354
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 210, 304
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 69, 100, 245, 288, 326
CviKI_1 RGCY 5 cut(s) 69, 100, 245, 288, 326
CviQI GTAC 2 cut(s) 210, 304
DdeI CTNAG 3 cut(s) 96, 260, 384
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 108, 126
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 1 cut(s) 253
FaiI YATR 9 cut(s) 25, 57, 59, 251, 320, 350, 373, 375, 381
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 249
FauNDI CATATG 2 cut(s) 57, 373
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 90, 206, 323
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 288
Hin1II CATG 1 cut(s) 253
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 115, 259, 340
Hpy8I GTNNAC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 155, 253, 356
HpyF3I CTNAG 3 cut(s) 96, 260, 384
Hsp92II CATG 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 9 cut(s) 95, 113, 122, 140, 144, 207, 272, 302, 340
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 3 cut(s) 90, 206, 323
MaeIII GTNAC 1 cut(s) 165
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MhlI GDGCHC 1 cut(s) 71
MnlI CCTC 3 cut(s) 111, 184, 277
MspR9I CCNGG 2 cut(s) 110, 128
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 2 cut(s) 110, 128
NdeI CATATG 2 cut(s) 57, 373
NdeII GATC 1 cut(s) 342
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 165
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 266
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 108, 126
PspGI CCWGG 2 cut(s) 108, 126
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 91
RsaI GTAC 2 cut(s) 211, 305
RsaNI GTAC 2 cut(s) 210, 304
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 110, 128
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 12, 71, 95, 172, 185, 211, 247
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SspMI CTAG 3 cut(s) 90, 206, 323
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 108, 126
TaaI ACNGT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 266
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 65, 360
Tth111I GACNNNGTC 1 cut(s) 91
XspI CTAG 3 cut(s) 90, 206, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.