Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

32568566 .. 32571794

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTCTTCAGGGAAGCTAATATGGTCGCAGATCATTTTGCTAGCTCAGGACAAAGATACTCTCAAAGTTGTATTTGGTTTAACAATGTTCCTACTGATTCTCCAAAACTTTTCCACCAGAATCTTTTGCAAGATGAACCCCAGATACGAGAAAATCCCCACCGTGGCACCACTCCGCCTGCCGGAAATGAAAGAATCGGTGGACGCCGTGGAGCAGATCCTAGACTATGACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTCATCCACCCCTCCTGCCGCATAAGCGACGCCGTTTCGTATCAGCGGCTCGCGTTCCTCGGCGACACCGTTCTTGACCTCGCTGTAAGTAAAGACCTCTTCCTTGCTTACCCTGTAATTGACCAAGGCGATCTCACTCGGCTACGTTCCGCTAACGTCAGCAATGAGAAGTTCGCACGTGTGGCTGTGAGACATGGGCTTTATACCTACCTTCGCCGCACTGCAACTCGTGCTCTCGATTATCAGGTTAGGGAGTTTACTGAAGCAATAAGACGAGAAGAGGAGAAGACGCCTGTATTTGGACGGTCTGTAGAAGCCCCTAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGGTGCTATTTATTTTGACTTGAATTTTGATCTGGAACAACTTTGGATGAAATTTAAGCATGTTTTGGAGCCTATAGTTACTCTTGAAGAGTTGCAGCAACAACCTCATCCTGTGCAACAACCTCATCCTGTGACAGAGTTGCAGCAACAATCTTATCCTGTTCAACAACCTCATCCTGTGACAGAGTTGCATCAACTTTGCCAGAAGCAGGGGAAGCATGTCAGTATCGAGTACGGGAGAGGTAAGATGAAGAGTAATATTGATGGGAAGTGTGTTGCCTTGGGTTCGGCTGAACAGAAAGGAAGTGCTAAGGTCAATGCTGCTGAGATGGCTCTGAGTAAGTTGATTTATGATGCGCTGGTTGAAGTTATTGCTGAAATCGATCGGCCATTTTCTGTTAAAAAAGCAAAAGATGAGTTGCATAAGATTTGTGCCGAGAAGAGGTGGCCTCAACCAATTTACACCATTGAGCATGAAGAGGGTCCTCCACATGATAAGATGTTTAAATCGATGGTAACTATAGGTCTGGTATATATGATTGGAGATGCAAATCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

391

Amino Acids

44.59

Weight (kDa)

6.44

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	80 - 214	2e-16	Ribonuclease-III-like
Ribonuclease_3	PF00636	102 - 211	2e-22	Ribonuclease III domain
DND1_DSRM	PF14709	340 - 378	9e-06	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	341 - 388	5.1e-07	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	314
AciI	CCGC	5 cut(s)	175, 280, 307, 411, 478
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	1001
AcsI	RAATTY	2 cut(s)	637, 665
AcuI	CTGAAG	1 cut(s)	543
AcvI	CACGTG	1 cut(s)	440
AcyI	GRCGYC	3 cut(s)	204, 291, 551
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	5 cut(s)	163, 181, 560, 823, 1056
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	235, 637, 701, 779, 980
AluBI	AGCT	3 cut(s)	16, 44, 260
AluI	AGCT	3 cut(s)	16, 44, 260
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	1001, 1061
ApeKI	GCWGC	3 cut(s)	709, 757, 935
ApoI	RAATTY	2 cut(s)	637, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
AspLEI	GCGC	1 cut(s)	973
AspS9I	GGNCC	1 cut(s)	1097
AsuNHI	GCTAGC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	1097
BanI	GGYRCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	489
BbrPI	CACGTG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	3 cut(s)	721, 769, 922
BccI	CCATC	3 cut(s)	872, 937, 1120
BceAI	ACGGC	2 cut(s)	191, 278
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	3 cut(s)	41, 221, 251
BfmI	CTRYAG	3 cut(s)	570, 687, 1134
BisI	GCNGC	6 cut(s)	280, 308, 478, 710, 758, 936
BlsI	GCNGC	6 cut(s)	281, 309, 479, 711, 759, 937
Bme18I	GGWCC	1 cut(s)	1097
BmgT120I	GGNCC	1 cut(s)	1097
BmiI	GGNNCC	3 cut(s)	168, 684, 1098
BmsI	GCATC	3 cut(s)	814, 958, 1150
BmtI	GCTAGC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	554
BplI	GAGNNNNNCTC	2 cut(s)	1048, 1080
Bpu10I	CCTNAGC	2 cut(s)	45, 924
Bsa29I	ATCGAT	2 cut(s)	996, 1124
BsaAI	YACGTR	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	1164
BsaHI	GRCGYC	3 cut(s)	204, 291, 551
BsaJI	CCNNGG	5 cut(s)	162, 207, 319, 385, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	5 cut(s)	163, 181, 560, 823, 1056
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	1164
BseCI	ATCGAT	2 cut(s)	996, 1124
BseDI	CCNNGG	5 cut(s)	162, 207, 319, 385, 894
BseGI	GGATG	5 cut(s)	264, 666, 721, 739, 787
BseJI	GATNNNNATC	1 cut(s)	1164
BseLI	CCNNNNNNNGG	5 cut(s)	163, 181, 560, 823, 1056
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	3 cut(s)	59, 930, 941
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	721, 769, 922
Bsh1236I	CGCG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	1000
BshFI	GGCC	2 cut(s)	1003, 1063
BshNI	GGYRCC	1 cut(s)	166
BshVI	ATCGAT	2 cut(s)	996, 1124
BsiEI	CGRYCG	1 cut(s)	1000
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	5 cut(s)	163, 181, 560, 823, 1056
BsmAI	GTCTC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	1003, 1063
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	5 cut(s)	30, 216, 391, 643, 997
BspACI	CCGC	5 cut(s)	175, 280, 307, 411, 478
BspANI	GGCC	2 cut(s)	1003, 1063
BspCNI	CTCAG	3 cut(s)	58, 931, 942
BspDI	ATCGAT	2 cut(s)	996, 1124
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	3 cut(s)	168, 684, 1098
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	430
BssECI	CCNNGG	5 cut(s)	162, 207, 319, 385, 894
BssMI	GATC	5 cut(s)	30, 216, 391, 643, 997
BssNI	GRCGYC	3 cut(s)	204, 291, 551
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	385, 894
Bst2BI	CACGAG	1 cut(s)	489
Bst4CI	ACNGT	3 cut(s)	163, 331, 567
Bst6I	CTCTTC	6 cut(s)	365, 534, 696, 860, 1049, 1086
BstACI	GRCGYC	3 cut(s)	204, 291, 551
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	42, 179, 312
BstDEI	CTNAG	4 cut(s)	45, 924, 939, 950
BstDSI	CCRYGG	2 cut(s)	162, 207
BstF5I	GGATG	5 cut(s)	264, 666, 721, 739, 787
BstFNI	CGCG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	973
BstKTI	GATC	5 cut(s)	33, 219, 394, 646, 1000
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	5 cut(s)	30, 216, 391, 643, 997
BstMCI	CGRYCG	1 cut(s)	1000
BstMWI	GCNNNNNNNGC	5 cut(s)	285, 443, 491, 829, 944
BstNSI	RCATGY	2 cut(s)	677, 836
BstSFI	CTRYAG	3 cut(s)	570, 687, 1134
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	721, 769, 922
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
Bsu15I	ATCGAT	2 cut(s)	996, 1124
BsuRI	GGCC	2 cut(s)	1003, 1063
BsuTUI	ATCGAT	2 cut(s)	996, 1124
BtgI	CCRYGG	2 cut(s)	162, 207
BtsCI	GGATG	5 cut(s)	264, 666, 721, 739, 787
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	42, 179, 312
CfoI	GCGC	1 cut(s)	973
Cfr13I	GGNCC	1 cut(s)	1097
ClaI	ATCGAT	2 cut(s)	996, 1124
CseI	GACGC	3 cut(s)	212, 299, 559
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	5 cut(s)	455, 674, 833, 1088, 1106
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	4 cut(s)	45, 924, 939, 950
DpnI	GATC	5 cut(s)	32, 218, 393, 645, 999
DpnII	GATC	5 cut(s)	30, 216, 391, 643, 997
DraI	TTTAAA	1 cut(s)	1120
EaeI	YGGCCR	1 cut(s)	1001
Eam1104I	CTCTTC	6 cut(s)	365, 534, 696, 860, 1049, 1086
EarI	CTCTTC	6 cut(s)	365, 534, 696, 860, 1049, 1086
EciI	GGCGGA	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	385, 894
Eco47I	GGWCC	1 cut(s)	1097
Eco57I	CTGAAG	1 cut(s)	543
Eco72I	CACGTG	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	1097
EcoT14I	CCWWGG	2 cut(s)	385, 894
ErhI	CCWWGG	2 cut(s)	385, 894
FaeI	CATG	5 cut(s)	458, 677, 836, 1091, 1109
FatI	CATG	5 cut(s)	454, 673, 832, 1087, 1105
Fnu4HI	GCNGC	6 cut(s)	280, 308, 478, 710, 758, 936
FokI	GGATG	5 cut(s)	251, 673, 708, 726, 774
Fsp4HI	GCNGC	6 cut(s)	280, 308, 478, 710, 758, 936
FspBI	CTAG	3 cut(s)	41, 221, 251
GlaI	GCGC	1 cut(s)	972
GluI	GCNGC	6 cut(s)	280, 308, 478, 710, 758, 936
HaeIII	GGCC	2 cut(s)	1003, 1063
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	3 cut(s)	212, 299, 559
HhaI	GCGC	1 cut(s)	973
Hin1I	GRCGYC	3 cut(s)	204, 291, 551
Hin1II	CATG	5 cut(s)	458, 677, 836, 1091, 1109
Hin6I	GCGC	1 cut(s)	971
HinP1I	GCGC	1 cut(s)	971
HinfI	GANTC	4 cut(s)	97, 120, 194, 605
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	202, 519
Hpy188I	TCNGA	1 cut(s)	951
Hpy188III	TCNNGA	8 cut(s)	47, 235, 251, 335, 497, 647, 698, 1169
Hpy8I	GTNNAC	2 cut(s)	202, 519
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	3 cut(s)	163, 331, 567
HpyCH4IV	ACGT	3 cut(s)	406, 417, 439
HpyCH4V	TGCA	9 cut(s)	129, 485, 593, 709, 730, 757, 805, 1036, 1163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	285, 443, 491, 829, 944
HpyF3I	CTNAG	4 cut(s)	45, 924, 939, 950
HpySE526I	ACGT	3 cut(s)	406, 417, 439
Hsp92I	GRCGYC	3 cut(s)	204, 291, 551
Hsp92II	CATG	5 cut(s)	458, 677, 836, 1091, 1109
HspAI	GCGC	1 cut(s)	971
Kzo9I	GATC	5 cut(s)	30, 216, 391, 643, 997
LmnI	GCTCC	2 cut(s)	211, 682
Lsp1109I	GCAGC	3 cut(s)	721, 769, 922
LweI	GCATC	3 cut(s)	814, 958, 1150
MaeI	CTAG	3 cut(s)	41, 221, 251
MaeII	ACGT	3 cut(s)	406, 417, 439
MaeIII	GTNAC	4 cut(s)	691, 745, 793, 1129
MalI	GATC	5 cut(s)	32, 218, 393, 645, 999
MboI	GATC	5 cut(s)	30, 216, 391, 643, 997
MboII	GAAGA	7 cut(s)	352, 551, 559, 713, 877, 1066, 1103
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	4 cut(s)	378, 637, 665, 1071
MlyI	GAGTC	1 cut(s)	614
MseI	TTAA	4 cut(s)	80, 669, 1014, 1119
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	5 cut(s)	285, 443, 491, 829, 944
NdeII	GATC	5 cut(s)	30, 216, 391, 643, 997
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	5 cut(s)	458, 677, 836, 1091, 1109
NlaIV	GGNNCC	3 cut(s)	168, 684, 1098
NmeAIII	GCCGAG	3 cut(s)	300, 379, 1075
NmuCI	GTSAC	2 cut(s)	745, 793
NspI	RCATGY	2 cut(s)	677, 836
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	97, 120, 194
PkrI	GCNGC	6 cut(s)	281, 309, 479, 711, 759, 937
Ple19I	CGATCG	1 cut(s)	1000
PleI	GAGTC	1 cut(s)	613
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	613
Ppu21I	YACGTR	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	1097
Psp5II	RGGWCCY	1 cut(s)	1097
PspCI	CACGTG	1 cut(s)	440
PspN4I	GGNNCC	3 cut(s)	168, 684, 1098
PspPI	GGNCC	1 cut(s)	1097
PspPPI	RGGWCCY	1 cut(s)	1097
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PsuI	RGATCY	1 cut(s)	216
PvuI	CGATCG	1 cut(s)	1000
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
SaqAI	TTAA	4 cut(s)	80, 669, 1014, 1119
SatI	GCNGC	6 cut(s)	280, 308, 478, 710, 758, 936
Sau3AI	GATC	5 cut(s)	30, 216, 391, 643, 997
Sau96I	GGNCC	1 cut(s)	1097
SchI	GAGTC	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	3 cut(s)	814, 958, 1150
SfcI	CTRYAG	3 cut(s)	570, 687, 1134
SinI	GGWCC	1 cut(s)	1097
Sse9I	AATT	4 cut(s)	378, 637, 665, 1071
SsiI	CCGC	5 cut(s)	175, 280, 307, 411, 478
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	41, 221, 251
StyI	CCWWGG	2 cut(s)	385, 894
TaaI	ACNGT	3 cut(s)	163, 331, 567
TaiI	ACGT	3 cut(s)	409, 420, 442
TaqI	TCGA	4 cut(s)	498, 843, 996, 1124
TasI	AATT	4 cut(s)	378, 637, 665, 1071
TauI	GCSGC	3 cut(s)	282, 310, 480
TfiI	GAWTC	3 cut(s)	97, 120, 194
Tru1I	TTAA	4 cut(s)	80, 669, 1014, 1119
Tru9I	TTAA	4 cut(s)	80, 669, 1014, 1119
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	2 cut(s)	745, 793
TseI	GCWGC	3 cut(s)	709, 757, 935
Tsp45I	GTSAC	2 cut(s)	745, 793
TspDTI	ATGAA	5 cut(s)	149, 203, 677, 878, 1104
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	1097
XapI	RAATTY	2 cut(s)	637, 665
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	2 cut(s)	677, 836
XspI	CTAG	3 cut(s)	41, 221, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.