Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

14928815 .. 14930094

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTCCACCTATCCCTCGCTTACTCCTCCTCTCTTCTCTCCTCCTCCTCTGCCTCACCATCCCCGCCTTAGCCCACAGTGGCCACCATGAAGACGATGAAACCGAACCCGACACCAACGACAGCGAAACCCCGCATAACCTCCGTTCGAGGCCTCTAATACTAGTCAAGATTTGGTGCCTCATCATAATATTTTTTGGGACGTTCTTACCTGGAGTTTCGCCTTATTTCTTCAAGTGGAATGAAGGGTTTTTGGTTTTGGGTATCCAGTTTGCTGGGGGTGTGTTTTTGGGTACGGCTATGATGCACTTTCTGAGTGATTCCAATGAGACTTTCAAGGACTTGACCCAAGAAGAATACCCTTTTGCGTTTATGTTGGCTTGTGGGGGCTTCTTGCTTACAATGCTTGCTGATTGTGTTATTTCCTACGTGTTCCTCAAGAACAAGAGTGTTGTGTCTGCTGCTCTACGATCGATCTTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

162

Amino Acids

18.0

Weight (kDa)

5.41

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	55 - 147	2.2e-16	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	177
AciI	CCGC	2 cut(s)	66, 134
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	463
AfaI	GTAC	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	2 cut(s)	235, 337
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
Alw26I	GTCTC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	82, 152
ApeKI	GCWGC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	323
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	6, 179
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	473
BseGI	GGATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	5 cut(s)	17, 20, 32, 35, 38
BseXI	GCAGC	1 cut(s)	448
BseYI	CCCAGC	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	84, 154
BshNI	GGYRCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	84, 154
Bsp143I	GATC	2 cut(s)	470, 474
BspACI	CCGC	2 cut(s)	66, 134
BspANI	GGCC	2 cut(s)	84, 154
BspCNI	CTCAG	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	473
BspLI	GGNNCC	2 cut(s)	6, 179
BspT107I	GGYRCC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	470, 474
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	70, 314
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	473, 477
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	470, 474
BstMCI	CGRYCG	1 cut(s)	473
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	84, 154
BsuTUI	ATCGAT	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	408
ClaI	ATCGAT	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	7 cut(s)	5, 74, 84, 154, 299, 380, 390
CviKI_1	RGCY	7 cut(s)	5, 74, 84, 154, 299, 380, 390
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	2 cut(s)	70, 314
DpnI	GATC	2 cut(s)	472, 476
DpnII	GATC	2 cut(s)	470, 474
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	90, 138, 188, 302, 374
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	1 cut(s)	88
FauI	CCCGC	2 cut(s)	73, 141
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	462
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	84, 154
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	169, 439
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	203, 429
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	2 cut(s)	70, 314
HpySE526I	ACGT	2 cut(s)	203, 429
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	470, 474
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	198, 225, 261, 281, 466
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	203, 429
MalI	GATC	2 cut(s)	472, 476
MboI	GATC	2 cut(s)	470, 474
MboII	GAAGA	5 cut(s)	27, 104, 223, 365, 469
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	403
NdeII	GATC	2 cut(s)	470, 474
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	6, 179
PceI	AGGCCT	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	463
Ple19I	CGATCG	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	6, 179
PvuI	CGATCG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	470, 474
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	6 cut(s)	13, 144, 206, 214, 432, 485
SfaNI	GCATC	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SpeI	ACTAGT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	66, 134
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	2 cut(s)	206, 432
TaqI	TCGA	2 cut(s)	149, 473
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	105, 114, 258
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	85
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.