Rw0G002110

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00066
OG0002192
Physical Location & Seq
Reverse (-)
61502 .. 63633
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002110.1

Sequence Viewer

Length: 1026 bp
ATGGCTCGACCACTCCTCCTCCTCCTCCTCCACCTCACCTCATCCTCCTCCCTCGCCCTCGCCGCCTCCGCCCACAGCGGCCACGGCGATGAAGACGAGGAACCAACCGCCGCAGACGACACTGACCTCCGCGCCAGGCCTCTGATCATGGCAAAGATTTGGTGTTTGATAGTTATCTTCTTCGGAACTTTCATCCCTGGAGTTTCCCCTTACTTCTTCAAATGGAATCAGGGTTTCTTGGTTCTGGGGACCCAGTTTGCTGGAGGCGTGTTTCTGGGGACGGCTCTGATGCATTTTCTGAGTGACGCTGATGAGACTTTTAAGGACTTGACTAAAAAAGAGTACCCTTTTGCGTTTATGTTGGCTTGTGCTGGGTTCTTGTTGACAATGCTGGCTGACTGTATCATTTCCTATGTGTTTTCCAAGAAAAGGGACGCTGGCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTCAACATGAAAAAGGCGTCACAGCATCACAGTGTCAGAGCCATAACCACTTTGCAAACGCATCTGTCGCAAATGTTAGTTCACTTGGGGATAGTGTCCTGTTGATAGTAGCCTTGTGTTTTCACTCTGTCTTTGAGGGCATTGCAATTGGAGTTGCTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACAATTTCTCTGCATAAGGTATTTGCAGCTATTGCCATGGGAATTGCTCTTCTGCGAATGATGCCTAACCGTCCCTTCTTATCATGCGCTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGCGTGGCCATTGGAATCATAATAGACGCAACAACCCAAGGTGCTGTGGCGGATTGGATATTTGCGATTTCAATGGGTCTGGCATGTGGTGTGTTTATCTATGTAGCTGTAAACCATTTATTGGCAAAGGGTTACACACCCGAGAAGGTAGTTTCTGTGGACAAACCCCATTACAAGTTTTTGGCAGTGTCGTTGGGCGTTGGCGTTATAGCTGTTGTGATGATTTGGGACACTTGA

Protein Analysis

341

Amino Acids

36.55

Weight (kDa)

5.97

Isoelectric Point (pI)

27.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 51 - 336 5.4e-53 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 910
AccII CGCG 1 cut(s) 132
AciI CCGC 7 cut(s) 63, 69, 78, 108, 111, 130, 839
AcoI YGGCCR 2 cut(s) 79, 795
AcyI GRCGYC 1 cut(s) 489
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 429, 910
AgsI TTSAA 4 cut(s) 220, 476, 780, 861
AjnI CCWGG 2 cut(s) 134, 196
AluBI AGCT 4 cut(s) 641, 692, 896, 1001
AluI AGCT 4 cut(s) 641, 692, 896, 1001
Alw26I GTCTC 3 cut(s) 308, 452, 626
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 3 cut(s) 79, 137, 795
ApeKI GCWGC 2 cut(s) 689, 752
AspLEI GCGC 2 cut(s) 134, 752
AspS9I GGNCC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 1 cut(s) 249
BalI TGGCCA 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 701, 739
BceAI ACGGC 2 cut(s) 100, 297
BciT130I CCWGG 2 cut(s) 136, 198
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 308, 452, 626
BisI GCNGC 5 cut(s) 63, 79, 111, 690, 753
BlsI GCNGC 5 cut(s) 64, 80, 112, 691, 754
Bme1390I CCNGG 2 cut(s) 136, 198
Bme18I GGWCC 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 3 cut(s) 102, 250, 251
BmrFI CCNGG 2 cut(s) 136, 198
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 5 cut(s) 279, 506, 542, 634, 714
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 2 cut(s) 219, 282
BpuEI CTTGAG 2 cut(s) 447, 476
BsaBI GATNNNNATC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 489
BsaJI CCNNGG 4 cut(s) 82, 196, 699, 826
BsaXI ACNNNNNCTCC 2 cut(s) 30, 33
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 910
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 2 cut(s) 136, 198
BseDI CCNNGG 4 cut(s) 82, 196, 699, 826
BseGI GGATG 2 cut(s) 41, 192
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 2 cut(s) 429, 910
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 290, 621
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 6 cut(s) 5, 8, 11, 14, 17, 37
BseXI GCAGC 2 cut(s) 701, 739
BseYI CCCAGC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 81, 139, 797
BsiHKCI CYCGRG 1 cut(s) 929
BslFI GGGAC 4 cut(s) 262, 292, 446, 720
BslI CCNNNNNNNGG 2 cut(s) 429, 910
BsmAI GTCTC 3 cut(s) 308, 452, 626
BsmFI GGGAC 4 cut(s) 262, 292, 446, 720
BsnI GGCC 3 cut(s) 81, 139, 797
BsoBI CYCGRG 1 cut(s) 929
Bsp143I GATC 2 cut(s) 144, 451
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 7 cut(s) 63, 69, 78, 108, 111, 130, 839
BspANI GGCC 3 cut(s) 81, 139, 797
BspCNI CTCAG 2 cut(s) 291, 622
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 102, 250, 251
BspQI GCTCTTC 1 cut(s) 717
BsrDI GCAATG 1 cut(s) 612
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 4 cut(s) 82, 196, 699, 826
BssMI GATC 2 cut(s) 144, 451
BssNI GRCGYC 1 cut(s) 489
BssT1I CCWWGG 2 cut(s) 699, 826
Bst2UI CCWGG 2 cut(s) 136, 198
Bst4CI ACNGT 3 cut(s) 401, 504, 734
Bst6I CTCTTC 1 cut(s) 717
BstACI GRCGYC 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 393, 439
BstDEI CTNAG 2 cut(s) 299, 630
BstDSI CCRYGG 2 cut(s) 82, 699
BstF5I GGATG 2 cut(s) 41, 192
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 2 cut(s) 134, 752
BstKTI GATC 2 cut(s) 147, 454
BstMAI GTCTC 3 cut(s) 308, 452, 626
BstMBI GATC 2 cut(s) 144, 451
BstMWI GCNNNNNNNGC 8 cut(s) 62, 68, 84, 539, 653, 695, 724, 758
BstNI CCWGG 2 cut(s) 136, 198
BstNSI RCATGY 1 cut(s) 876
BstSCI CCNGG 2 cut(s) 134, 196
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 701, 739
BstV2I GAAGAC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 260
BsuRI GGCC 3 cut(s) 81, 139, 797
BtgI CCRYGG 2 cut(s) 82, 699
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 41, 192
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 3 cut(s) 120, 509, 981
Cac8I GCNNGC 2 cut(s) 393, 439
CfoI GCGC 2 cut(s) 134, 752
Cfr13I GGNCC 1 cut(s) 249
CseI GACGC 4 cut(s) 314, 443, 478, 824
Csp6I GTAC 1 cut(s) 343
CviAII CATG 5 cut(s) 148, 479, 700, 747, 873
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 299, 630
DpnI GATC 2 cut(s) 146, 453
DpnII GATC 2 cut(s) 144, 451
EaeI YGGCCR 2 cut(s) 79, 795
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
EciI GGCGGA 2 cut(s) 58, 854
Eco130I CCWWGG 2 cut(s) 699, 826
Eco147I AGGCCT 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 929
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 134, 196
EcoT14I CCWWGG 2 cut(s) 699, 826
EcoT22I ATGCAT 1 cut(s) 294
ErhI CCWWGG 2 cut(s) 699, 826
FaeI CATG 5 cut(s) 151, 482, 703, 750, 876
FaqI GGGAC 4 cut(s) 262, 292, 446, 720
FatI CATG 5 cut(s) 147, 478, 699, 746, 872
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 5 cut(s) 63, 79, 111, 690, 753
FokI GGATG 2 cut(s) 28, 179
Fsp4HI GCNGC 5 cut(s) 63, 79, 111, 690, 753
GlaI GCGC 2 cut(s) 133, 751
GluI GCNGC 5 cut(s) 63, 79, 111, 690, 753
GsaI CCCAGC 1 cut(s) 375
GsuI CTGGAG 2 cut(s) 219, 282
HaeIII GGCC 3 cut(s) 81, 139, 797
HgaI GACGC 4 cut(s) 314, 443, 478, 824
HhaI GCGC 2 cut(s) 134, 752
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 5 cut(s) 151, 482, 703, 750, 876
Hin6I GCGC 2 cut(s) 132, 750
HinP1I GCGC 2 cut(s) 132, 750
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 3 cut(s) 226, 460, 804
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 4 cut(s) 384, 554, 901, 949
Hpy188I TCNGA 6 cut(s) 144, 185, 288, 300, 451, 510
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 4 cut(s) 384, 554, 901, 949
HpyAV CCTTC 2 cut(s) 748, 928
HpyCH4III ACNGT 3 cut(s) 401, 504, 734
HpyCH4V TGCA 6 cut(s) 292, 527, 617, 676, 689, 767
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 68, 84, 539, 653, 695, 724, 758
HpyF3I CTNAG 2 cut(s) 299, 630
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 5 cut(s) 151, 482, 703, 750, 876
HspAI GCGC 2 cut(s) 132, 750
KflI GGGWCCC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 2 cut(s) 144, 451
LguI GCTCTTC 1 cut(s) 717
Lsp1109I GCAGC 2 cut(s) 701, 739
LweI GCATC 5 cut(s) 279, 506, 542, 634, 714
MaeIII GTNAC 3 cut(s) 302, 490, 920
MalI GATC 2 cut(s) 146, 453
MboI GATC 2 cut(s) 144, 451
MboII GAAGA 5 cut(s) 104, 169, 172, 208, 704
MfeI CAATTG 1 cut(s) 618
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 3 cut(s) 618, 666, 705
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 1 cut(s) 454
Mox20I TGGCCA 1 cut(s) 797
Mph1103I ATGCAT 1 cut(s) 294
MscI TGGCCA 1 cut(s) 797
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 87, 502
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 136, 198
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 2 cut(s) 136, 198
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 8 cut(s) 62, 68, 84, 539, 653, 695, 724, 758
NcoI CCATGG 1 cut(s) 699
NdeII GATC 2 cut(s) 144, 451
NlaIII CATG 5 cut(s) 151, 482, 703, 750, 876
NlaIV GGNNCC 3 cut(s) 102, 250, 251
NmuCI GTSAC 2 cut(s) 302, 490
NsiI ATGCAT 1 cut(s) 294
NspI RCATGY 1 cut(s) 876
PceI AGGCCT 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 226, 804
PflMI CCANNNNNTGG 1 cut(s) 910
PkrI GCNGC 5 cut(s) 64, 80, 112, 691, 754
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 134, 196
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 2 cut(s) 134, 196
PspN4I GGNNCC 3 cut(s) 102, 250, 251
PspPI GGNCC 1 cut(s) 249
PspPPI RGGWCCY 1 cut(s) 249
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 87, 502
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 5 cut(s) 63, 79, 111, 690, 753
Sau3AI GATC 2 cut(s) 144, 451
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 2 cut(s) 136, 198
SfaNI GCATC 5 cut(s) 279, 506, 542, 634, 714
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 87, 502
SmlI CTYRAG 2 cut(s) 455, 462
SmoI CTYRAG 2 cut(s) 455, 462
Sse9I AATT 3 cut(s) 618, 666, 705
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 7 cut(s) 63, 69, 78, 108, 111, 130, 839
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 134, 196
StyI CCWWGG 2 cut(s) 699, 826
TaaI ACNGT 3 cut(s) 401, 504, 734
TaqI TCGA 1 cut(s) 7
TasI AATT 3 cut(s) 618, 666, 705
TauI GCSGC 3 cut(s) 65, 81, 113
TfiI GAWTC 2 cut(s) 226, 804
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 3 cut(s) 127, 509, 981
TseFI GTSAC 2 cut(s) 302, 490
TseI GCWGC 2 cut(s) 689, 752
Tsp45I GTSAC 2 cut(s) 302, 490
TspDTI ATGAA 3 cut(s) 105, 181, 495
TspRI CASTG 3 cut(s) 127, 509, 981
Van91I CCANNNNNTGG 1 cut(s) 910
VpaK11BI GGWCC 1 cut(s) 249
XceI RCATGY 1 cut(s) 876
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.