Rw0G002100

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00066
OG0002192
Physical Location & Seq
Reverse (-)
59674 .. 60868
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002100.1

Sequence Viewer

Length: 786 bp
ATGTCACCTTACTTCTTAAGGTGGAACGAGGCGTTCTTGGTTCTAGGCACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAAACAAGACTTTTGAGGGCTTGACTGAAAAGGAGTACCCTTTTGCCTGTATGCTGGCCTGTGTAGGGTTCTTGATCACAATGCTTGCAGATTGTGTGGTTTCATATGTCTATGCTAAGCAGAAGGACAGTCCAACCGACCCTGAATTTCAAGGGAAGGACGAGGCTCAGAAGAGCGATGCCACCCACCACGTAGCAGCAGTTGGTTCATTTGGGGACACCATTTTGTTGATCATCGCCTTGTGCTTCCACTCTTTCTTTGAGGGCATCGCTATTGGAATTGCAAAAACGAAAATTGATGCTTGGAAGGCTTTGTGGACAGTGTGTCTGCACAAAATGATTGCAGCCATTGCCATGAGCATTGCTCTCCTCCGCATGGTTCCCAATCATCCCTTCTTATCATGCATGGCTTACGCTTCTATCTTTGCCATTTCTAGTCCAGTTGGTGTGGGAGTTGGGATCATAATAGAATCTACAACTGAAGGTTCAACAGCAGATTGGATGTTTGCTATTTCTATAGGCTTGGCTTGTGGAGTATTCATCTATGTTTCGATAAACCATTTGCTTTCAAAGGGTTACACAGCTCACAATGCAGTTTCTGTTGACAAACCCCATTACAGGTTATTGGCTGTTGTGTTTGGTATTGGAGTAATCTCTGTGGCCATGATCTGGGACACTTAA

Protein Analysis

261

Amino Acids

28.28

Weight (kDa)

5.95

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 4 - 255 1.5e-40 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 774
AciI CCGC 1 cut(s) 478
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 606
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 4 cut(s) 171, 481, 723, 774
AflII CTTAAG 1 cut(s) 16
AgsI TTSAA 4 cut(s) 108, 257, 594, 675
AhdI GACNNNNNGTC 1 cut(s) 429
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AluBI AGCT 2 cut(s) 83, 689
AluI AGCT 2 cut(s) 83, 689
AlwI GGATC 1 cut(s) 572
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 2 cut(s) 162, 765
ApeKI GCWGC 2 cut(s) 302, 449
ApoI RAATTY 1 cut(s) 251
BalI TGGCCA 1 cut(s) 767
BbvI GCAGC 2 cut(s) 314, 461
BclI TGATCA 2 cut(s) 180, 336
BfaI CTAG 2 cut(s) 44, 540
BfmI CTRYAG 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 16
BisI GCNGC 2 cut(s) 303, 450
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 2 cut(s) 304, 451
BmeRI GACNNNNNGTC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 486
BmsI GCATC 3 cut(s) 274, 381, 394
BplI GAGNNNNNCTC 2 cut(s) 454, 486
Bpu1102I GCTNAGC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 298
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 481, 723, 774
Bse1I ACTGG 1 cut(s) 545
Bse3DI GCAATG 2 cut(s) 453, 465
BseGI GGATG 2 cut(s) 493, 612
BseLI CCNNNNNNNGG 4 cut(s) 171, 481, 723, 774
BseMI GCAATG 2 cut(s) 453, 465
BseMII CTCAG 2 cut(s) 89, 287
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 2 cut(s) 314, 461
BsgI GTGCAG 1 cut(s) 419
BshFI GGCC 2 cut(s) 164, 767
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 4 cut(s) 171, 481, 723, 774
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 2 cut(s) 164, 767
Bsp143I GATC 4 cut(s) 180, 336, 564, 771
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 1 cut(s) 478
BspANI GGCC 2 cut(s) 164, 767
BspCNI CTCAG 2 cut(s) 90, 286
BspLI GGNNCC 1 cut(s) 486
BspPI GGATC 1 cut(s) 572
BspQI GCTCTTC 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 453, 465
BsrI ACTGG 1 cut(s) 545
BssMI GATC 4 cut(s) 180, 336, 564, 771
Bst4CI ACNGT 3 cut(s) 54, 236, 427
Bst6I CTCTTC 1 cut(s) 272
BstAFI CTTAAG 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 455
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 162, 192
BstDEI CTNAG 3 cut(s) 98, 222, 273
BstF5I GGATG 2 cut(s) 493, 612
BstKTI GATC 4 cut(s) 183, 339, 567, 774
BstMBI GATC 4 cut(s) 180, 336, 564, 771
BstMWI GCNNNNNNNGC 3 cut(s) 413, 455, 695
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 2 cut(s) 314, 461
BsuRI GGCC 2 cut(s) 164, 767
BtgZI GCGATG 3 cut(s) 297, 325, 358
BtsCI GGATG 2 cut(s) 493, 612
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 162, 192
CaiI CAGNNNCTG 1 cut(s) 704
Csp6I GTAC 1 cut(s) 142
CviAII CATG 6 cut(s) 88, 460, 481, 507, 511, 769
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 3 cut(s) 98, 222, 273
DpnI GATC 4 cut(s) 182, 338, 566, 773
DpnII GATC 4 cut(s) 180, 336, 564, 771
DriI GACNNNNNGTC 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 512
FaeI CATG 6 cut(s) 91, 463, 484, 510, 514, 772
FaqI GGGAC 1 cut(s) 335
FatI CATG 6 cut(s) 87, 459, 480, 506, 510, 768
FauNDI CATATG 1 cut(s) 211
FbaI TGATCA 2 cut(s) 180, 336
Fnu4HI GCNGC 2 cut(s) 303, 450
FokI GGATG 2 cut(s) 480, 619
Fsp4HI GCNGC 2 cut(s) 303, 450
FspBI CTAG 2 cut(s) 44, 540
GluI GCNGC 2 cut(s) 303, 450
HaeIII GGCC 2 cut(s) 164, 767
Hin1II CATG 6 cut(s) 91, 463, 484, 510, 514, 772
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 2 cut(s) 104, 575
Hpy166II GTNNAC 2 cut(s) 423, 709
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 2 cut(s) 97, 178
Hpy8I GTNNAC 2 cut(s) 423, 709
HpyAV CCTTC 5 cut(s) 223, 256, 406, 508, 581
HpyCH4III ACNGT 3 cut(s) 54, 236, 427
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 7 cut(s) 91, 194, 389, 436, 449, 510, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 455, 695
HpyF3I CTNAG 3 cut(s) 98, 222, 273
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 6 cut(s) 91, 463, 484, 510, 514, 772
Ksp22I TGATCA 2 cut(s) 180, 336
Kzo9I GATC 4 cut(s) 180, 336, 564, 771
LguI GCTCTTC 1 cut(s) 272
LpnPI CCDG 9 cut(s) 45, 110, 146, 166, 178, 261, 558, 709, 760
Lsp1109I GCAGC 2 cut(s) 314, 461
LweI GCATC 3 cut(s) 274, 381, 394
MaeI CTAG 2 cut(s) 44, 540
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 3, 680
MalI GATC 4 cut(s) 182, 338, 566, 773
MboI GATC 4 cut(s) 180, 336, 564, 771
MboII GAAGA 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 3 cut(s) 251, 384, 399
MluNI TGGCCA 1 cut(s) 767
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 5 cut(s) 22, 115, 262, 361, 485
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 512
MscI TGGCCA 1 cut(s) 767
MseI TTAA 2 cut(s) 17, 784
MslI CAYNNNNRTG 1 cut(s) 458
Msp20I TGGCCA 1 cut(s) 767
MspCI CTTAAG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 413, 455, 695
NdeI CATATG 1 cut(s) 211
NdeII GATC 4 cut(s) 180, 336, 564, 771
NlaIII CATG 6 cut(s) 91, 463, 484, 510, 514, 772
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 104, 575
PflMI CCANNNNNTGG 1 cut(s) 774
PkrI GCNGC 2 cut(s) 304, 451
Ppu21I YACGTR 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 704
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 17, 784
SatI GCNGC 2 cut(s) 303, 450
Sau3AI GATC 4 cut(s) 180, 336, 564, 771
SetI ASST 7 cut(s) 10, 23, 85, 300, 592, 691, 728
SfaNI GCATC 3 cut(s) 274, 381, 394
SfcI CTRYAG 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 3 cut(s) 251, 384, 399
SsiI CCGC 1 cut(s) 478
SspMI CTAG 2 cut(s) 44, 540
TaaI ACNGT 3 cut(s) 54, 236, 427
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 656
TasI AATT 3 cut(s) 251, 384, 399
TfiI GAWTC 2 cut(s) 104, 575
Tru1I TTAA 2 cut(s) 17, 784
Tru9I TTAA 2 cut(s) 17, 784
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 302, 449
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 198, 303, 634
TspRI CASTG 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 774
Vha464I CTTAAG 1 cut(s) 16
XapI RAATTY 1 cut(s) 251
XspI CTAG 2 cut(s) 44, 540
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.