Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023670.1

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

30331 .. 30789

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023670.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggcttgctgtaataatcttattttcctctctctcttcctctgcctcaccttctcttccttagcctacagcaacaacaacgacaatgaaaccaaaaatggaaatggtgctcacaaccttcggtccaagtctctagtcctggtcaagatatggtgcttgctgttggtctttgttgggacttttgcagcaggaatgtcaccttacttcttaaggtggaacgagtcattcttggttctaggcacacagtttgctggtggtgtgtttttgggaacagctctcatgcacttcctgagtgattcagacaggacttttcagggcttaactgaaaaggagtacccttttgcgtatatgctggcatgtatggggttcttgatcactatgcttgctgattgtgttgtttcttatgtgtatggtaagcaggagggtagtactactgaccctgaagttctaggttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

152

Amino Acids

16.87

Weight (kDa)

5.19

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	335, 430
AflII	CTTAAG	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	40, 189
AvaII	GGWCC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	3 cut(s)	134, 236, 449
BfmI	CTRYAG	1 cut(s)	67
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	208
BssMI	GATC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	41, 61
BstAFI	CTTAAG	1 cut(s)	208
BstC8I	GCNNGC	4 cut(s)	7, 158, 354, 384
BstDEI	CTNAG	2 cut(s)	61, 290
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	372
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	197
Cac8I	GCNNGC	4 cut(s)	7, 158, 354, 384
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	334, 429
CviAII	CATG	2 cut(s)	280, 357
CviJI	RGCY	4 cut(s)	5, 65, 275, 318
CviKI_1	RGCY	4 cut(s)	5, 65, 275, 318
CviQI	GTAC	2 cut(s)	334, 429
DdeI	CTNAG	2 cut(s)	61, 290
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	41, 61
EarI	CTCTTC	2 cut(s)	41, 61
Eco47I	GGWCC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	283, 360
FaiI	YATR	9 cut(s)	151, 281, 348, 350, 358, 362, 380, 405, 411
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	2 cut(s)	279, 356
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	3 cut(s)	134, 236, 449
GluI	GCNGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	283, 360
HinfI	GANTC	2 cut(s)	221, 296
HphI	GGTGA	2 cut(s)	40, 189
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	145, 289, 370
HpyAV	CCTTC	2 cut(s)	61, 128
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	185, 283
HpyF3I	CTNAG	2 cut(s)	61, 290
Hsp92II	CATG	2 cut(s)	283, 360
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	372
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	3 cut(s)	134, 236, 449
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	2 cut(s)	28, 48
MhlI	GDGCHC	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	4 cut(s)	38, 50, 56, 415
MseI	TTAA	2 cut(s)	209, 320
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	2 cut(s)	283, 360
NmuCI	GTSAC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	123
RsaI	GTAC	2 cut(s)	335, 430
RsaNI	GTAC	2 cut(s)	334, 429
SaqAI	TTAA	2 cut(s)	209, 320
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	123
ScaI	AGTACT	1 cut(s)	430
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	6 cut(s)	53, 120, 202, 215, 277, 454
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SspMI	CTAG	3 cut(s)	134, 236, 449
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	111
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	209, 320
Tru9I	TTAA	2 cut(s)	209, 320
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	102
Vha464I	CTTAAG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	360
XspI	CTAG	3 cut(s)	134, 236, 449
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.