Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

19599344 .. 19600870

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCACCAGTACAACATGGCTGGCTACAATCTTCTCAAGCTTTCTCTCTTCCTCTTCCTCACCCTCTCCACCTTGGCCTACAGAAGCGACGACGGTGATGAAACCAACAAGAACAACCACGCTCGCAGCCTTCACTCTAAGCCTCTAATGCTCGTAAAGGTATGGTGCATGGTTTTGGTTTTTGTTGGGACATTTGCAGCCAGAATGTCTCCCTACTTCTTAAAGTGGAACGAGGGGTTTCTGGTTCTAGGAACGCAGTTTGCTGGCGGTATTTTTCTGGGTACAGCTCTCATGCACTTTCTCAGTGATTCAAACAAGACTTTCGAAAGCTTGACTGAGAAGGAATACCCTTTTGCATATATGATGGCGAGCCTGGGGTTCTTGATCGACCATGCTTGCGGATTCTGTGGTTTCATATGTGGCCATGATGTTCATGGTGACCACCCTGCAACAGTTGGTTCAGTTGGGGATAGCATCTTGTTGATCGTAGCCTTGTGTTTCCACTCTTTCTTTGAGGGTATCGCCATCGGAGTTGCCAGCACGAAAGCTGAAGCTTGGAAGGCTCTGTGGACGGTCAGTCTGCACAAAATCTTTGCAGCCATCGCCATGGCCATTGCTCTCCTCCGAATGATTCCAGACCGTCCCTTCTTATCATGCGCGGTATATGCTTTTCTGTTTGCCATTTCCAGTCCAATTGGTATCGGAGTTGGGATCATGATAGATGCCGCAACTCAAGGTAGAACAGCAGATTGGATCTCTGCCATATCGATAGGTCTGGCATGCGGCGTGTTCATATATGTATCCATAAACCATCTGCTGTCAAAGGGTTATACAGCTCACAAGTCAGTCTCTGTTGACACTCCCCACTACAAGTTTTTGGCTGTGTTGTTTGGAATCGGAGTGGTATCAGTTGTCATGATCTGGGACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

311

Amino Acids

33.85

Weight (kDa)

6.88

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	51 - 129	2.2e-11	ZIP Zinc transporter
Zip	PF02535	155 - 305	3e-33	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	659
AciI	CCGC	5 cut(s)	267, 399, 659, 726, 783
AclWI	GGATC	2 cut(s)	719, 761
AcoI	YGGCCR	2 cut(s)	421, 609
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	11, 283
AgsI	TTSAA	1 cut(s)	312
AhdI	GACNNNNNGTC	1 cut(s)	576
AjnI	CCWGG	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	733, 765
AluBI	AGCT	6 cut(s)	40, 287, 330, 548, 554, 836
AluI	AGCT	6 cut(s)	40, 287, 330, 548, 554, 836
Alw26I	GTCTC	2 cut(s)	213, 853
AlwI	GGATC	2 cut(s)	719, 761
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	75, 421, 609
ApeKI	GCWGC	3 cut(s)	126, 197, 596
AspLEI	GCGC	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	52, 107, 449
AsuII	TTCGAA	1 cut(s)	324
BalI	TGGCCA	2 cut(s)	423, 611
BbvI	GCAGC	3 cut(s)	138, 209, 608
BccI	CCATC	4 cut(s)	358, 533, 608, 819
BciT130I	CCWGG	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	213, 853
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	811
BisI	GCNGC	5 cut(s)	127, 198, 597, 726, 784
BlsI	GCNGC	5 cut(s)	128, 199, 598, 727, 785
Bme1390I	CCNGG	1 cut(s)	374
BmeRI	GACNNNNNGTC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	483, 712
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	20, 717
Bsa29I	ATCGAT	1 cut(s)	767
BsaJI	CCNNGG	3 cut(s)	72, 373, 606
Bse1I	ACTGG	2 cut(s)	7, 687
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	767
BseDI	CCNNGG	3 cut(s)	72, 373, 606
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	316, 327
BseNI	ACTGG	2 cut(s)	7, 687
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	3 cut(s)	138, 209, 608
BsgI	GTGCAG	1 cut(s)	566
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	3 cut(s)	77, 423, 611
BshVI	ATCGAT	1 cut(s)	767
BslFI	GGGAC	2 cut(s)	202, 627
BsmAI	GTCTC	2 cut(s)	213, 853
BsmFI	GGGAC	2 cut(s)	202, 627
BsnI	GGCC	3 cut(s)	77, 423, 611
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	5 cut(s)	384, 483, 711, 753, 918
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	5 cut(s)	267, 399, 659, 726, 783
BspANI	GGCC	3 cut(s)	77, 423, 611
BspCNI	CTCAG	2 cut(s)	315, 328
BspDI	ATCGAT	1 cut(s)	767
BspFNI	CGCG	1 cut(s)	659
BspHI	TCATGA	2 cut(s)	714, 915
BspPI	GGATC	2 cut(s)	719, 761
BspT104I	TTCGAA	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	7, 687
BssECI	CCNNGG	3 cut(s)	72, 373, 606
BssMI	GATC	5 cut(s)	384, 483, 711, 753, 918
BssT1I	CCWWGG	2 cut(s)	72, 606
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	4 cut(s)	95, 454, 574, 641
Bst6I	CTCTTC	2 cut(s)	53, 59
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	7 cut(s)	22, 124, 265, 370, 397, 538, 781
BstDEI	CTNAG	3 cut(s)	138, 302, 336
BstDSI	CCRYGG	1 cut(s)	606
BstEII	GGTNACC	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	659
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	5 cut(s)	387, 486, 714, 756, 921
BstMAI	GTCTC	2 cut(s)	213, 853
BstMBI	GATC	5 cut(s)	384, 483, 711, 753, 918
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 560, 602, 665
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	783
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	3 cut(s)	138, 209, 608
BstX2I	RGATCY	1 cut(s)	753
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	753
Bsu15I	ATCGAT	1 cut(s)	767
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	3 cut(s)	77, 423, 611
BsuTUI	ATCGAT	1 cut(s)	767
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	7 cut(s)	22, 124, 265, 370, 397, 538, 781
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	2 cut(s)	714, 915
CfoI	GCGC	1 cut(s)	659
ClaI	ATCGAT	1 cut(s)	767
Csp6I	GTAC	2 cut(s)	10, 282
CviQI	GTAC	2 cut(s)	10, 282
DdeI	CTNAG	3 cut(s)	138, 302, 336
DpnI	GATC	5 cut(s)	386, 485, 713, 755, 920
DpnII	GATC	5 cut(s)	384, 483, 711, 753, 918
DriI	GACNNNNNGTC	1 cut(s)	576
EaeI	YGGCCR	2 cut(s)	421, 609
Eam1104I	CTCTTC	2 cut(s)	53, 59
Eam1105I	GACNNNNNGTC	1 cut(s)	576
EarI	CTCTTC	2 cut(s)	53, 59
Eco130I	CCWWGG	2 cut(s)	72, 606
Eco57I	CTGAAG	1 cut(s)	570
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	2 cut(s)	72, 606
ErhI	CCWWGG	2 cut(s)	72, 606
FaqI	GGGAC	2 cut(s)	202, 627
FauNDI	CATATG	1 cut(s)	416
Fnu4HI	GCNGC	5 cut(s)	127, 198, 597, 726, 784
Fsp4HI	GCNGC	5 cut(s)	127, 198, 597, 726, 784
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	5 cut(s)	127, 198, 597, 726, 784
HaeIII	GGCC	3 cut(s)	77, 423, 611
HhaI	GCGC	1 cut(s)	659
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	3 cut(s)	38, 328, 552
HinfI	GANTC	4 cut(s)	308, 402, 631, 894
HphI	GGTGA	3 cut(s)	52, 107, 449
Hpy166II	GTNNAC	2 cut(s)	570, 856
Hpy188I	TCNGA	4 cut(s)	530, 626, 704, 899
Hpy188III	TCNNGA	4 cut(s)	382, 635, 715, 916
Hpy8I	GTNNAC	2 cut(s)	570, 856
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	4 cut(s)	140, 334, 553, 655
HpyCH4III	ACNGT	4 cut(s)	95, 454, 574, 641
HpyCH4V	TGCA	8 cut(s)	4, 168, 197, 295, 356, 449, 583, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 560, 602, 665
HpyF3I	CTNAG	3 cut(s)	138, 302, 336
HspAI	GCGC	1 cut(s)	657
Kzo9I	GATC	5 cut(s)	384, 483, 711, 753, 918
Lsp1109I	GCAGC	3 cut(s)	138, 209, 608
LweI	GCATC	2 cut(s)	483, 712
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	5 cut(s)	386, 485, 713, 755, 920
MboI	GATC	5 cut(s)	384, 483, 711, 753, 918
MboII	GAAGA	3 cut(s)	23, 40, 46
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	753
MlsI	TGGCCA	2 cut(s)	423, 611
MluCI	AATT	1 cut(s)	693
MluNI	TGGCCA	2 cut(s)	423, 611
MnlI	CCTC	7 cut(s)	62, 68, 74, 153, 226, 508, 632
Mox20I	TGGCCA	2 cut(s)	423, 611
MscI	TGGCCA	2 cut(s)	423, 611
MseI	TTAA	2 cut(s)	221, 931
MslI	CAYNNNNRTG	1 cut(s)	605
Msp20I	TGGCCA	2 cut(s)	423, 611
MspR9I	CCNGG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	4 cut(s)	148, 560, 602, 665
NcoI	CCATGG	1 cut(s)	606
NdeI	CATATG	1 cut(s)	416
NdeII	GATC	5 cut(s)	384, 483, 711, 753, 918
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	783
NspV	TTCGAA	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	783
PagI	TCATGA	2 cut(s)	714, 915
PfeI	GAWTC	4 cut(s)	308, 402, 631, 894
PkrI	GCNGC	5 cut(s)	128, 199, 598, 727, 785
Psp6I	CCWGG	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	753
RsaI	GTAC	2 cut(s)	11, 283
RsaNI	GTAC	2 cut(s)	10, 282
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	2 cut(s)	221, 931
SatI	GCNGC	5 cut(s)	127, 198, 597, 726, 784
Sau3AI	GATC	5 cut(s)	384, 483, 711, 753, 918
ScrFI	CCNGG	1 cut(s)	374
SfaNI	GCATC	2 cut(s)	483, 712
SfcI	CTRYAG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	2 cut(s)	35, 732
SmoI	CTYRAG	2 cut(s)	35, 732
SphI	GCATGC	1 cut(s)	783
Sse9I	AATT	1 cut(s)	693
SsiI	CCGC	5 cut(s)	267, 399, 659, 726, 783
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	72, 606
TaaI	ACNGT	4 cut(s)	95, 454, 574, 641
TaqI	TCGA	3 cut(s)	324, 387, 767
TasI	AATT	1 cut(s)	693
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	728, 786
TfiI	GAWTC	4 cut(s)	308, 402, 631, 894
Tru1I	TTAA	2 cut(s)	221, 931
Tru9I	TTAA	2 cut(s)	221, 931
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	126, 197, 596
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	114, 403, 422, 781
TspRI	CASTG	1 cut(s)	310
XceI	RCATGY	1 cut(s)	783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.