Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003165.1

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

28433 .. 28954

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003165.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgctttcactgcagagccatggcacccaccacgtagcagcagttggttcatttggggacaccattttgttgatcatagccttgtgcttccactctttctttgagggcatcgctattggaattgcaaaaacgaaaattgatgcttggaaggctttgtggacactgtgtctgcacaaaatgattgcagccattgccatgggcattgctctcctccgcatggttcccaatcgttcaacagcagattggatgtttgctatttctataggcttggcttgtggagtattcatctatgtttcgataaaccatttgctttcaaagggttacacagctcacaatgcagtttctgttgacaaaccccattacaggttattggctgttgtgtttggtattggagtaatctctgtggccatgatctgggacacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

141

Amino Acids

15.28

Weight (kDa)

8.91

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	414
AciI	CCGC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	217, 363, 414
AgsI	TTSAA	2 cut(s)	234, 315
AhdI	GACNNNNNGTC	1 cut(s)	165
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	38, 185
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	50, 197
BclI	TGATCA	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	11, 261
BisI	GCNGC	2 cut(s)	39, 186
BlsI	GCNGC	2 cut(s)	40, 187
BmeRI	GACNNNNNGTC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	25, 222
BmsI	GCATC	2 cut(s)	117, 130
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	19, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 363, 414
Bse3DI	GCAATG	2 cut(s)	189, 201
BseDI	CCNNGG	2 cut(s)	19, 195
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	217, 363, 414
BseMI	GCAATG	2 cut(s)	189, 201
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	50, 197
BsgI	GTGCAG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	217, 363, 414
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	72, 411
Bsp19I	CCATGG	2 cut(s)	19, 195
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	25, 222
BspMAI	CTGCAG	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	189, 201
BssECI	CCNNGG	2 cut(s)	19, 195
BssMI	GATC	2 cut(s)	72, 411
BssT1I	CCWWGG	2 cut(s)	19, 195
Bst4CI	ACNGT	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	34
BstDSI	CCRYGG	2 cut(s)	19, 195
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	75, 414
BstMBI	GATC	2 cut(s)	72, 411
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 149, 191, 335
BstSFI	CTRYAG	2 cut(s)	11, 261
BstV1I	GCAGC	2 cut(s)	50, 197
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	19, 195
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	8
BtsIMutI	CAGTG	2 cut(s)	8, 161
CaiI	CAGNNNCTG	1 cut(s)	344
CviAII	CATG	4 cut(s)	20, 196, 217, 409
CviJI	RGCY	9 cut(s)	18, 80, 152, 188, 267, 272, 329, 374, 407
CviKI_1	RGCY	9 cut(s)	18, 80, 152, 188, 267, 272, 329, 374, 407
DpnI	GATC	2 cut(s)	74, 413
DpnII	GATC	2 cut(s)	72, 411
DriI	GACNNNNNGTC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	405
Eam1105I	GACNNNNNGTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	19, 195
EcoT14I	CCWWGG	2 cut(s)	19, 195
ErhI	CCWWGG	2 cut(s)	19, 195
FaeI	CATG	4 cut(s)	23, 199, 220, 412
FaiI	YATR	7 cut(s)	21, 77, 197, 218, 263, 291, 410
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	19, 195, 216, 408
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	39, 186
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	39, 186
GluI	GCNGC	2 cut(s)	39, 186
HaeIII	GGCC	1 cut(s)	407
Hin1II	CATG	4 cut(s)	23, 199, 220, 412
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	159, 349
Hpy8I	GTNNAC	2 cut(s)	159, 349
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	13, 125, 172, 185, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 149, 191, 335
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	23, 199, 220, 412
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	72, 411
LpnPI	CCDG	2 cut(s)	349, 400
Lsp1109I	GCAGC	2 cut(s)	50, 197
LweI	GCATC	2 cut(s)	117, 130
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	74, 413
MboI	GATC	2 cut(s)	72, 411
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	2 cut(s)	120, 135
MluNI	TGGCCA	1 cut(s)	407
MnlI	CCTC	2 cut(s)	97, 221
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	407
MwoI	GCNNNNNNNGC	4 cut(s)	10, 149, 191, 335
NcoI	CCATGG	2 cut(s)	19, 195
NdeII	GATC	2 cut(s)	72, 411
NlaIII	CATG	4 cut(s)	23, 199, 220, 412
NlaIV	GGNNCC	2 cut(s)	25, 222
PflMI	CCANNNNNTGG	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	40, 187
Ppu21I	YACGTR	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	25, 222
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	2 cut(s)	39, 186
Sau3AI	GATC	2 cut(s)	72, 411
SetI	ASST	3 cut(s)	36, 331, 368
SfaNI	GCATC	2 cut(s)	117, 130
SfcI	CTRYAG	2 cut(s)	11, 261
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	120, 135
SsiI	CCGC	1 cut(s)	214
StyI	CCWWGG	2 cut(s)	19, 195
TaaI	ACNGT	1 cut(s)	165
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	120, 135
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	2 cut(s)	15, 168
TseI	GCWGC	2 cut(s)	38, 185
TspDTI	ATGAA	2 cut(s)	39, 274
TspRI	CASTG	2 cut(s)	15, 168
Van91I	CCANNNNNTGG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.