Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

57920648 .. 57920923

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG380500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCACCTTACTTCTCAAGGTGGAACGAGGCGTTCTTGGTTCCAGGTACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAAACAAGACTTTTGAGGGCTTGACTGAAAAGAAGTACCCTTTTGCCGATATGCTGGCCTGTGTAGGGTTCTTGATCACTATGCTTGCAGATTGTGTGGTTTCATATGTCTATGCTAAGCAGAAGGACAGTCCAACCGACCCTGAATTTCAAGGTCAGGGGTGGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

91

Amino Acids

10.16

Weight (kDa)

4.79

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	8 - 78	1.3e-13	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	49, 143
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	108, 257
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AoxI	GGCC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	1 cut(s)	180
BfaI	CTAG	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	171
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	180, 270
Bsp1720I	GCTNAGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	42
BssMI	GATC	2 cut(s)	180, 270
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	54, 236
BstC8I	GCNNGC	2 cut(s)	162, 192
BstDEI	CTNAG	2 cut(s)	98, 222
BstKTI	GATC	2 cut(s)	183, 273
BstMBI	GATC	2 cut(s)	180, 270
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	162, 192
Csp6I	GTAC	2 cut(s)	48, 142
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	3 cut(s)	83, 126, 164
CviKI_1	RGCY	3 cut(s)	83, 126, 164
CviQI	GTAC	2 cut(s)	48, 142
DdeI	CTNAG	2 cut(s)	98, 222
DpnI	GATC	2 cut(s)	182, 272
DpnII	GATC	2 cut(s)	180, 270
EcoRII	CCWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	91
FaiI	YATR	6 cut(s)	89, 158, 188, 211, 213, 219
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	180
FspBI	CTAG	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188III	TCNNGA	2 cut(s)	97, 178
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	54, 236
HpyCH4V	TGCA	2 cut(s)	91, 194
HpyF3I	CTNAG	2 cut(s)	98, 222
Hsp92II	CATG	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	180, 270
LpnPI	CCDG	8 cut(s)	30, 45, 57, 110, 146, 178, 248, 261
MaeI	CTAG	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	182, 272
MboI	GATC	2 cut(s)	180, 270
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	2 cut(s)	22, 115
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	180, 270
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	3
PfeI	GAWTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	2 cut(s)	49, 143
RsaNI	GTAC	2 cut(s)	48, 142
Sau3AI	GATC	2 cut(s)	180, 270
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	5 cut(s)	10, 23, 49, 85, 262
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	54, 236
TasI	AATT	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	198
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.