Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

56236371 .. 56237615

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCACCTTACTTCTTAAGGTGGAACGAGGCGTTCTTGGTTCTAGGCACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAAACAAGACTTTTGAGGGCTTGACTGAAAAGGAGTACCCTTTTGCCTGTATGCTGGCCTGTGTAGGGTTCTTGATCACAATGTTTGCAGATTGTGTGGTTTCATATGTCTATGCTAAGCAGAAGGACAGTCCAACCGACCCTGAATTTCAAGGGAAGGACGAGGCTCACAAGAGCCATGGCACCCACCACGTAGCAGCAGTTGGTTCATTTGGGGACACCATTTTGTTGATCATAGCCTTGTGCTTCCACTCTTTCTCTGAGGGCATCGCTATTGGAATTGCAAAAACGAAAATTGATGCTTGGAAGGCTTTGTGGACAGTGTGTCTGCACAAAATGATTGCAGCCATTGCCATGAGCATTGCTCTCCTCCGCATGGTTCCCAATCGTCCCTTCTTATCATGCATGGCTTACGCTTTTATCTTTGCCATTTCTAGTCCAGTTGGTGTGGGAGTTGGGATCATAATAGATTCCACAACTGAAGGTTCAACAGCAGATTGGATGTTTGCTATTTCTATAGGCTTGGCTTGTGGAGTATTCATCTATGTTTCGATAAACCATTTGCTTTCAAAGGGTTACACAGCTCACAATGCAGTTTCTGTTGACAAACCCCATTACAGGTTATTGGCTGTTGTGTTTGGTATTGGAGTAATCTCTGTGGCCATGATCTGGGACACTTACGTCGCATATATTGCTCATCGATCATTCTCAAGGGTATCTCGATTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

278

Amino Acids

30.38

Weight (kDa)

7.15

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	4 - 255	1.4e-41	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	774
AciI	CCGC	1 cut(s)	478
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	4 cut(s)	171, 481, 723, 774
AflII	CTTAAG	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	108, 257, 594, 675
AhdI	GACNNNNNGTC	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	2 cut(s)	83, 689
AluI	AGCT	2 cut(s)	83, 689
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	162, 765
ApeKI	GCWGC	2 cut(s)	302, 449
ApoI	RAATTY	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	767
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	314, 461
BclI	TGATCA	2 cut(s)	180, 336
BfaI	CTAG	2 cut(s)	44, 540
BfmI	CTRYAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	16
BisI	GCNGC	2 cut(s)	303, 450
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	2 cut(s)	304, 451
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmiI	GGNNCC	2 cut(s)	289, 486
BmsI	GCATC	2 cut(s)	381, 394
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	799
Bsa29I	ATCGAT	1 cut(s)	805
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 481, 723, 774
Bse1I	ACTGG	1 cut(s)	545
Bse3DI	GCAATG	2 cut(s)	453, 465
BseCI	ATCGAT	1 cut(s)	805
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	4 cut(s)	171, 481, 723, 774
BseMI	GCAATG	2 cut(s)	453, 465
BseMII	CTCAG	2 cut(s)	89, 357
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	314, 461
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	164, 767
BshNI	GGYRCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	805
BslFI	GGGAC	3 cut(s)	335, 480, 791
BslI	CCNNNNNNNGG	4 cut(s)	171, 481, 723, 774
BsmFI	GGGAC	3 cut(s)	335, 480, 791
BsnI	GGCC	2 cut(s)	164, 767
Bsp143I	GATC	5 cut(s)	180, 336, 564, 771, 806
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	2 cut(s)	164, 767
BspCNI	CTCAG	2 cut(s)	90, 358
BspDI	ATCGAT	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	289, 486
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	16
BsrDI	GCAATG	2 cut(s)	453, 465
BsrI	ACTGG	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	5 cut(s)	180, 336, 564, 771, 806
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	3 cut(s)	54, 236, 427
BstAFI	CTTAAG	1 cut(s)	16
BstAPI	GCANNNNNTGC	2 cut(s)	455, 797
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	98, 222, 366
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	612
BstKTI	GATC	5 cut(s)	183, 339, 567, 774, 809
BstMBI	GATC	5 cut(s)	180, 336, 564, 771, 806
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 455, 695, 797
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	314, 461
Bsu15I	ATCGAT	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	164, 767
BsuTUI	ATCGAT	1 cut(s)	805
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	704
ClaI	ATCGAT	1 cut(s)	805
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	7 cut(s)	88, 284, 460, 481, 507, 511, 769
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	98, 222, 366
DpnI	GATC	5 cut(s)	182, 338, 566, 773, 808
DpnII	GATC	5 cut(s)	180, 336, 564, 771, 806
DrdI	GACNNNNNNGTC	1 cut(s)	785
DriI	GACNNNNNGTC	1 cut(s)	429
DseDI	GACNNNNNNGTC	1 cut(s)	785
EaeI	YGGCCR	1 cut(s)	765
Eam1105I	GACNNNNNGTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	7 cut(s)	91, 287, 463, 484, 510, 514, 772
FaqI	GGGAC	3 cut(s)	335, 480, 791
FatI	CATG	7 cut(s)	87, 283, 459, 480, 506, 510, 768
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	2 cut(s)	180, 336
Fnu4HI	GCNGC	2 cut(s)	303, 450
FokI	GGATG	1 cut(s)	619
Fsp4HI	GCNGC	2 cut(s)	303, 450
FspBI	CTAG	2 cut(s)	44, 540
GluI	GCNGC	2 cut(s)	303, 450
HaeIII	GGCC	2 cut(s)	164, 767
Hin1II	CATG	7 cut(s)	91, 287, 463, 484, 510, 514, 772
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	2 cut(s)	104, 575
Hpy166II	GTNNAC	2 cut(s)	423, 709
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	3 cut(s)	97, 178, 825
Hpy8I	GTNNAC	2 cut(s)	423, 709
Hpy99I	CGWCG	1 cut(s)	791
HpyAV	CCTTC	5 cut(s)	223, 256, 406, 508, 581
HpyCH4III	ACNGT	3 cut(s)	54, 236, 427
HpyCH4IV	ACGT	2 cut(s)	297, 786
HpyCH4V	TGCA	7 cut(s)	91, 194, 389, 436, 449, 510, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 455, 695, 797
HpyF3I	CTNAG	3 cut(s)	98, 222, 366
HpySE526I	ACGT	2 cut(s)	297, 786
Hsp92II	CATG	7 cut(s)	91, 287, 463, 484, 510, 514, 772
Ksp22I	TGATCA	2 cut(s)	180, 336
Kzo9I	GATC	5 cut(s)	180, 336, 564, 771, 806
LpnPI	CCDG	9 cut(s)	45, 110, 146, 166, 178, 261, 558, 709, 760
Lsp1109I	GCAGC	2 cut(s)	314, 461
LweI	GCATC	2 cut(s)	381, 394
MaeI	CTAG	2 cut(s)	44, 540
MaeII	ACGT	2 cut(s)	297, 786
MaeIII	GTNAC	2 cut(s)	3, 680
MalI	GATC	5 cut(s)	182, 338, 566, 773, 808
MboI	GATC	5 cut(s)	180, 336, 564, 771, 806
MlsI	TGGCCA	1 cut(s)	767
MluCI	AATT	3 cut(s)	251, 384, 399
MluNI	TGGCCA	1 cut(s)	767
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	5 cut(s)	22, 115, 262, 361, 485
Mox20I	TGGCCA	1 cut(s)	767
Mph1103I	ATGCAT	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	2 cut(s)	17, 835
MslI	CAYNNNNRTG	1 cut(s)	458
Msp20I	TGGCCA	1 cut(s)	767
MspCI	CTTAAG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	413, 455, 695, 797
NcoI	CCATGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	5 cut(s)	180, 336, 564, 771, 806
NlaIII	CATG	7 cut(s)	91, 287, 463, 484, 510, 514, 772
NlaIV	GGNNCC	2 cut(s)	289, 486
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	104, 575
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	2 cut(s)	304, 451
Ppu21I	YACGTR	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	289, 486
PstNI	CAGNNNCTG	1 cut(s)	704
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	17, 835
SatI	GCNGC	2 cut(s)	303, 450
Sau3AI	GATC	5 cut(s)	180, 336, 564, 771, 806
SetI	ASST	8 cut(s)	10, 23, 85, 300, 592, 691, 728, 789
SfaNI	GCATC	2 cut(s)	381, 394
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	16, 814
SmoI	CTYRAG	2 cut(s)	16, 814
Sse9I	AATT	3 cut(s)	251, 384, 399
SsiI	CCGC	1 cut(s)	478
SspMI	CTAG	2 cut(s)	44, 540
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	54, 236, 427
TaiI	ACGT	2 cut(s)	300, 789
TaqI	TCGA	3 cut(s)	656, 805, 826
TasI	AATT	3 cut(s)	251, 384, 399
TfiI	GAWTC	2 cut(s)	104, 575
Tru1I	TTAA	2 cut(s)	17, 835
Tru9I	TTAA	2 cut(s)	17, 835
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	302, 449
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	198, 303, 634
TspRI	CASTG	1 cut(s)	432
Van91I	CCANNNNNTGG	1 cut(s)	774
Vha464I	CTTAAG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	2 cut(s)	44, 540
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.