Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012421.1

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

7836 .. 11413

Gene Structure 3578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012421.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

atgttggcttgtgctgggttcttgttgacaatgctggctgactgtatcatttcctatgtgttttccaagaaaagggacgctggctctgtttctgatcttgagactcaagggagtgttcaacatgaaaaaggcgtcacagcatcacagtgtcagagccataaccactttgcaaacgcatctgtcgcaaatgttagttcacttggggatagtgtcctgttgatagtagccttgtgttttcactctgtctttgagggcattgcaattggagttgctgagactaaagctgacgcttggaaagccttatggacaatttctctgcataaggtatttgcagctattgccatgggaattgctcttctgcgaatgatgcctaaccgtcccttcttatcatgcgctgcctatgcttttgcatttgctatttcaagtcctattggcgtggccattggaatcataatagacgcaacaacccaaggtgctgtggcagattggatatttgcgatttcaatgggtctggcatgtggtgtgtttatctatgtagctgtaagccatttattggcaaagggttacacacccgataaggtagtttctgtggacaaaccccattacaagtttttggcagtgtcgttgggcgttggcgttatagcgaatggcgttcttctcttcctttgcctcaccctctcttccttagcctacagcaaccacggcgagggtgaaactgaaaaacacaatggtgctcactaccttcgatctaaggctcttatcctggtcaagatttggtgcctgctgttggtctttgttgggacttttgcagcaggaatgtcaccttacttcttaaggtggaatgaggcgttcttgattctaggcacacagtttgctggtggtgtgtttttgggaacagctctcatgcacttcctgagtgattcaaacaagacttttgagggcttgactgaaaaggagtacccttttgcctgtatgctggcctgtgtagggttcttgatcacaattcttgcagattgtgtggtttcatatgtctatgctaagcagaaggacagtccaaccgaccctgaatttcaagggaaggacgaggctcagaagagccatggcacccaccacgtagcagcagttggttcatttggggacaccattttgttgatcatagccttgtgcttccactctttctttgagggcatcgctattggaattgcaaaaacgaaaattgatgcttggaaggctttgtggacactgtgtctgcacaaaatgattgcagccattgccatgggcattgctctcctccgcatggttcccaatcgttcaacagcagattggatgtttgctatttctataggcttggcttgtggagtattcatctatgtttcgataaaccatttgctttcaaagggttacacagctcacaatgcagtttctgttgacaaaccccattacaggttattggctgttgtgtttggtattggagtaatctctgtggccatgatctgggacacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

501

Amino Acids

53.83

Weight (kDa)

7.26

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	777, 1103
AccB7I	CCANNNNNTGG	2 cut(s)	553, 1494
AciI	CCGC	1 cut(s)	1294
AcoI	YGGCCR	2 cut(s)	438, 1485
AcsI	RAATTY	1 cut(s)	1067
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	959
AfiI	CCNNNNNNNGG	8 cut(s)	72, 553, 706, 787, 987, 1297, 1443, 1494
AflII	CTTAAG	1 cut(s)	832
AgsI	TTSAA	7 cut(s)	119, 423, 504, 924, 1073, 1314, 1395
AhdI	GACNNNNNGTC	1 cut(s)	1245
AjnI	CCWGG	1 cut(s)	762
AleI	CACNNNNGTG	1 cut(s)	729
AluBI	AGCT	5 cut(s)	284, 335, 539, 899, 1409
AluI	AGCT	5 cut(s)	284, 335, 539, 899, 1409
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	2 cut(s)	95, 269
AlwNI	CAGNNNCTG	1 cut(s)	1424
AoxI	GGCC	3 cut(s)	438, 978, 1485
ApeKI	GCWGC	5 cut(s)	332, 395, 809, 1118, 1265
ApoI	RAATTY	1 cut(s)	1067
AspLEI	GCGC	1 cut(s)	395
AsuHPI	GGTGA	3 cut(s)	664, 722, 813
BalI	TGGCCA	2 cut(s)	440, 1487
BanI	GGYRCC	2 cut(s)	777, 1103
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	5 cut(s)	344, 382, 821, 1130, 1277
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	1 cut(s)	764
BclI	TGATCA	2 cut(s)	996, 1152
BcoDI	GTCTC	2 cut(s)	95, 269
BfaI	CTAG	1 cut(s)	860
BfmI	CTRYAG	2 cut(s)	691, 1341
BfrI	CTTAAG	1 cut(s)	832
BisI	GCNGC	5 cut(s)	333, 396, 810, 1119, 1266
BlpI	GCTNAGC	1 cut(s)	1038
BlsI	GCNGC	5 cut(s)	334, 397, 811, 1120, 1267
Bme1390I	CCNGG	1 cut(s)	764
BmeRI	GACNNNNNGTC	1 cut(s)	1245
BmiI	GGNNCC	3 cut(s)	779, 1105, 1302
BmrFI	CCNGG	1 cut(s)	764
BmsI	GCATC	5 cut(s)	149, 185, 357, 1197, 1210
Bpu10I	CCTNAGC	1 cut(s)	685
Bpu1102I	GCTNAGC	1 cut(s)	1038
BpuEI	CTTGAG	2 cut(s)	90, 119
BsaAI	YACGTR	1 cut(s)	1114
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	5 cut(s)	342, 469, 700, 1099, 1275
Bsc4I	CCNNNNNNNGG	8 cut(s)	72, 553, 706, 787, 987, 1297, 1443, 1494
Bse3DI	GCAATG	3 cut(s)	255, 1269, 1281
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	5 cut(s)	342, 469, 700, 1099, 1275
BseGI	GGATG	1 cut(s)	1332
BseLI	CCNNNNNNNGG	8 cut(s)	72, 553, 706, 787, 987, 1297, 1443, 1494
BseMI	GCAATG	3 cut(s)	255, 1269, 1281
BseMII	CTCAG	3 cut(s)	264, 905, 1103
BseRI	GAGGAG	1 cut(s)	1280
BseXI	GCAGC	5 cut(s)	344, 382, 821, 1130, 1277
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	1235
BshFI	GGCC	3 cut(s)	440, 980, 1487
BshNI	GGYRCC	2 cut(s)	777, 1103
BsiHKAI	GWGCWC	1 cut(s)	736
BslFI	GGGAC	4 cut(s)	89, 363, 814, 1151
BslI	CCNNNNNNNGG	8 cut(s)	72, 553, 706, 787, 987, 1297, 1443, 1494
BsmAI	GTCTC	2 cut(s)	95, 269
BsmFI	GGGAC	4 cut(s)	89, 363, 814, 1151
BsnI	GGCC	3 cut(s)	440, 980, 1487
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	5 cut(s)	94, 746, 996, 1152, 1491
Bsp1720I	GCTNAGC	1 cut(s)	1038
Bsp19I	CCATGG	3 cut(s)	342, 1099, 1275
BspACI	CCGC	1 cut(s)	1294
BspANI	GGCC	3 cut(s)	440, 980, 1487
BspCNI	CTCAG	3 cut(s)	265, 906, 1102
BspLI	GGNNCC	3 cut(s)	779, 1105, 1302
BspQI	GCTCTTC	2 cut(s)	360, 1088
BspT107I	GGYRCC	2 cut(s)	777, 1103
BspTI	CTTAAG	1 cut(s)	832
BsrDI	GCAATG	3 cut(s)	255, 1269, 1281
BssECI	CCNNGG	5 cut(s)	342, 469, 700, 1099, 1275
BssMI	GATC	5 cut(s)	94, 746, 996, 1152, 1491
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	4 cut(s)	342, 469, 1099, 1275
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	6 cut(s)	44, 147, 377, 870, 1052, 1245
Bst6I	CTCTTC	4 cut(s)	360, 665, 685, 1088
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	832
BstAPI	GCANNNNNTGC	2 cut(s)	338, 1271
BstBAI	YACGTR	1 cut(s)	1114
BstC8I	GCNNGC	4 cut(s)	36, 82, 782, 978
BstDEI	CTNAG	6 cut(s)	273, 685, 750, 914, 1038, 1089
BstDSI	CCRYGG	4 cut(s)	342, 700, 1099, 1275
BstF5I	GGATG	1 cut(s)	1332
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	5 cut(s)	97, 749, 999, 1155, 1494
BstMAI	GTCTC	2 cut(s)	95, 269
BstMBI	GATC	5 cut(s)	94, 746, 996, 1152, 1491
BstMWI	GCNNNNNNNGC	9 cut(s)	182, 296, 338, 367, 401, 702, 1229, 1271, 1415
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	762
BstSFI	CTRYAG	2 cut(s)	691, 1341
BstV1I	GCAGC	5 cut(s)	344, 382, 821, 1130, 1277
BstXI	CCANNNNNNTGG	1 cut(s)	1276
BsuRI	GGCC	3 cut(s)	440, 980, 1487
BtgI	CCRYGG	4 cut(s)	342, 700, 1099, 1275
BtgZI	GCGATG	1 cut(s)	1174
BtsCI	GGATG	1 cut(s)	1332
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	3 cut(s)	152, 624, 1241
Cac8I	GCNNGC	4 cut(s)	36, 82, 782, 978
CaiI	CAGNNNCTG	1 cut(s)	1424
CfoI	GCGC	1 cut(s)	395
CseI	GACGC	4 cut(s)	86, 121, 296, 467
Csp6I	GTAC	1 cut(s)	958
CviAII	CATG	9 cut(s)	122, 343, 390, 516, 904, 1100, 1276, 1297, 1489
CviQI	GTAC	1 cut(s)	958
DdeI	CTNAG	6 cut(s)	273, 685, 750, 914, 1038, 1089
DpnI	GATC	5 cut(s)	96, 748, 998, 1154, 1493
DpnII	GATC	5 cut(s)	94, 746, 996, 1152, 1491
DriI	GACNNNNNGTC	1 cut(s)	1245
EaeI	YGGCCR	2 cut(s)	438, 1485
Eam1104I	CTCTTC	4 cut(s)	360, 665, 685, 1088
Eam1105I	GACNNNNNGTC	1 cut(s)	1245
EarI	CTCTTC	4 cut(s)	360, 665, 685, 1088
Eco130I	CCWWGG	4 cut(s)	342, 469, 1099, 1275
EcoRII	CCWGG	1 cut(s)	762
EcoT14I	CCWWGG	4 cut(s)	342, 469, 1099, 1275
ErhI	CCWWGG	4 cut(s)	342, 469, 1099, 1275
FaeI	CATG	9 cut(s)	125, 346, 393, 519, 907, 1103, 1279, 1300, 1492
FaqI	GGGAC	4 cut(s)	89, 363, 814, 1151
FatI	CATG	9 cut(s)	121, 342, 389, 515, 903, 1099, 1275, 1296, 1488
FauNDI	CATATG	1 cut(s)	1027
FbaI	TGATCA	2 cut(s)	996, 1152
Fnu4HI	GCNGC	5 cut(s)	333, 396, 810, 1119, 1266
FokI	GGATG	1 cut(s)	1339
Fsp4HI	GCNGC	5 cut(s)	333, 396, 810, 1119, 1266
FspBI	CTAG	1 cut(s)	860
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	5 cut(s)	333, 396, 810, 1119, 1266
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	440, 980, 1487
HgaI	GACGC	4 cut(s)	86, 121, 296, 467
HhaI	GCGC	1 cut(s)	395
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	9 cut(s)	125, 346, 393, 519, 907, 1103, 1279, 1300, 1492
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	2 cut(s)	27, 1429
HindII	GTYRAC	2 cut(s)	27, 1429
HinfI	GANTC	4 cut(s)	103, 447, 856, 920
HphI	GGTGA	3 cut(s)	664, 722, 813
Hpy166II	GTNNAC	5 cut(s)	27, 197, 592, 1239, 1429
Hpy188I	TCNGA	3 cut(s)	94, 153, 1092
Hpy188III	TCNNGA	5 cut(s)	98, 769, 853, 913, 994
Hpy8I	GTNNAC	5 cut(s)	27, 197, 592, 1239, 1429
HpyAV	CCTTC	5 cut(s)	391, 752, 1039, 1072, 1222
HpyCH4III	ACNGT	6 cut(s)	44, 147, 377, 870, 1052, 1245
HpyCH4IV	ACGT	1 cut(s)	1113
HpyF10VI	GCNNNNNNNGC	9 cut(s)	182, 296, 338, 367, 401, 702, 1229, 1271, 1415
HpyF3I	CTNAG	6 cut(s)	273, 685, 750, 914, 1038, 1089
HpySE526I	ACGT	1 cut(s)	1113
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	9 cut(s)	125, 346, 393, 519, 907, 1103, 1279, 1300, 1492
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	996, 1152
Kzo9I	GATC	5 cut(s)	94, 746, 996, 1152, 1491
LguI	GCTCTTC	2 cut(s)	360, 1088
Lsp1109I	GCAGC	5 cut(s)	344, 382, 821, 1130, 1277
LweI	GCATC	5 cut(s)	149, 185, 357, 1197, 1210
MaeI	CTAG	1 cut(s)	860
MaeII	ACGT	1 cut(s)	1113
MaeIII	GTNAC	4 cut(s)	133, 563, 819, 1400
MalI	GATC	5 cut(s)	96, 748, 998, 1154, 1493
MboI	GATC	5 cut(s)	94, 746, 996, 1152, 1491
MboII	GAAGA	5 cut(s)	347, 647, 652, 672, 1105
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	736
MlsI	TGGCCA	2 cut(s)	440, 1487
MluCI	AATT	7 cut(s)	261, 309, 348, 1002, 1067, 1200, 1215
MluNI	TGGCCA	2 cut(s)	440, 1487
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	1079
MnlI	CCTC	9 cut(s)	244, 680, 686, 700, 838, 931, 1078, 1177, 1301
Mox20I	TGGCCA	2 cut(s)	440, 1487
MscI	TGGCCA	2 cut(s)	440, 1487
MseI	TTAA	2 cut(s)	833, 1504
MslI	CAYNNNNRTG	3 cut(s)	145, 729, 1274
Msp20I	TGGCCA	2 cut(s)	440, 1487
MspCI	CTTAAG	1 cut(s)	832
MspR9I	CCNGG	1 cut(s)	764
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	9 cut(s)	182, 296, 338, 367, 401, 702, 1229, 1271, 1415
NcoI	CCATGG	3 cut(s)	342, 1099, 1275
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	5 cut(s)	94, 746, 996, 1152, 1491
NlaIII	CATG	9 cut(s)	125, 346, 393, 519, 907, 1103, 1279, 1300, 1492
NlaIV	GGNNCC	3 cut(s)	779, 1105, 1302
NmuCI	GTSAC	2 cut(s)	133, 819
NspI	RCATGY	1 cut(s)	519
OliI	CACNNNNGTG	1 cut(s)	729
PciSI	GCTCTTC	2 cut(s)	360, 1088
PfeI	GAWTC	3 cut(s)	447, 856, 920
PflMI	CCANNNNNTGG	2 cut(s)	553, 1494
PkrI	GCNGC	5 cut(s)	334, 397, 811, 1120, 1267
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Ppu21I	YACGTR	1 cut(s)	1114
Psp6I	CCWGG	1 cut(s)	762
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	3 cut(s)	779, 1105, 1302
PstNI	CAGNNNCTG	1 cut(s)	1424
RsaI	GTAC	1 cut(s)	959
RsaNI	GTAC	1 cut(s)	958
RseI	CAYNNNNRTG	3 cut(s)	145, 729, 1274
SapI	GCTCTTC	2 cut(s)	360, 1088
SaqAI	TTAA	2 cut(s)	833, 1504
SatI	GCNGC	5 cut(s)	333, 396, 810, 1119, 1266
Sau3AI	GATC	5 cut(s)	94, 746, 996, 1152, 1491
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	764
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	5 cut(s)	149, 185, 357, 1197, 1210
SfcI	CTRYAG	2 cut(s)	691, 1341
SmiMI	CAYNNNNRTG	3 cut(s)	145, 729, 1274
SmlI	CTYRAG	3 cut(s)	98, 105, 832
SmoI	CTYRAG	3 cut(s)	98, 105, 832
Sse9I	AATT	7 cut(s)	261, 309, 348, 1002, 1067, 1200, 1215
SsiI	CCGC	1 cut(s)	1294
SspMI	CTAG	1 cut(s)	860
StyD4I	CCNGG	1 cut(s)	762
StyI	CCWWGG	4 cut(s)	342, 469, 1099, 1275
TaaI	ACNGT	6 cut(s)	44, 147, 377, 870, 1052, 1245
TaiI	ACGT	1 cut(s)	1116
TaqI	TCGA	2 cut(s)	745, 1376
TasI	AATT	7 cut(s)	261, 309, 348, 1002, 1067, 1200, 1215
TfiI	GAWTC	3 cut(s)	447, 856, 920
Tru1I	TTAA	2 cut(s)	833, 1504
Tru9I	TTAA	2 cut(s)	833, 1504
TscAI	CASTG	3 cut(s)	152, 624, 1248
TseFI	GTSAC	2 cut(s)	133, 819
TseI	GCWGC	5 cut(s)	332, 395, 809, 1118, 1265
Tsp45I	GTSAC	2 cut(s)	133, 819
TspDTI	ATGAA	4 cut(s)	138, 1014, 1119, 1354
TspRI	CASTG	3 cut(s)	152, 624, 1248
Van91I	CCANNNNNTGG	2 cut(s)	553, 1494
Vha464I	CTTAAG	1 cut(s)	832
XapI	RAATTY	1 cut(s)	1067
XceI	RCATGY	1 cut(s)	519
XspI	CTAG	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.