Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

51458135 .. 51459408

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG390500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCACCTTACTTCTTAAGGTGGAACGAGGCATTCTTGGTTCTAGGCACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAGACAGCACTTTTCAGGGCTTAACTGAAAAGGAGTACCCTTTTGCCTATATGCTGGCATGTATGGGGTTCTTGATCACTATGCTTGCTGATTGTGTTGTTTCTTATGTGTATGGTAAGCAGGAGGGTAGTACTACTGACCCAGAAGTTCTAGGAAAGGAAGAGGCTCACAAGGGCCATGATACTCACCACATTGCAGCGGTTGGTTCATTCAGGGACACAATTCTGTTGATCGTAGCCTTGTGCTTCCACTCTTTCTTTGAGGGGATTGCAATTGGGATTGCCAAGACAAAACTGGATGCTTGGAAAGCCTTGTGGACAGTGTGTGTGCACAAAATCATTGCAGCTATTGCCATGAGCATTGCCCTTCTCCGCATGATTCCAAATCGGCCATTCATATCATGCATGGCATATGCTTTTGTATTTGCCATTTCCAGTCCAGTTGGTGTAGGAGTTGGGATCATAATAGACGCCAAAACCCAAGGTGCCACAGCAGATTGGATGTTTGCTATTTCTACAGCTTTGGCTTGTGGAGTGTTCATCTATGTGTCAATAAATCATTTGCTTTCGAAAGGTTACACAGCTCAAAATGCAGTCTCTGTTGATGAACCCCATTACAAGTTTTTGGCTGTTGTTTTTGGTGTTGGGGTGATCTCTGTTGCCATGATCTGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

260

Amino Acids

28.28

Weight (kDa)

5.95

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	4 - 255	1.7e-43	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	774
AciI	CCGC	2 cut(s)	305, 478
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	2 cut(s)	143, 238
AfiI	CCNNNNNNNGG	1 cut(s)	774
AflII	CTTAAG	1 cut(s)	16
AluBI	AGCT	4 cut(s)	83, 452, 626, 689
AluI	AGCT	4 cut(s)	83, 452, 626, 689
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	706
Alw44I	GTGCAC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	280, 494
ApaLI	GTGCAC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	302, 449
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	284, 766
AsuII	TTCGAA	1 cut(s)	674
BaeGI	GKGCMC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	314, 461
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	2 cut(s)	44, 257
BfmI	CTRYAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	16
BisI	GCNGC	2 cut(s)	303, 450
BlsI	GCNGC	2 cut(s)	304, 451
BmcAI	AGTACT	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	592
BmsI	GCATC	1 cut(s)	394
Bpu14I	TTCGAA	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	3 cut(s)	405, 540, 545
Bse3DI	GCAATG	3 cut(s)	297, 444, 465
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	2 cut(s)	409, 612
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMI	GCAATG	3 cut(s)	297, 444, 465
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	3 cut(s)	405, 540, 545
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	314, 461
BshFI	GGCC	2 cut(s)	282, 496
BshNI	GGYRCC	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	282, 496
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	180, 336, 564, 756, 771
BspACI	CCGC	2 cut(s)	305, 478
BspANI	GGCC	2 cut(s)	282, 496
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	592
BspPI	GGATC	1 cut(s)	572
BspT104I	TTCGAA	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	590
BspTI	CTTAAG	1 cut(s)	16
BsrDI	GCAATG	3 cut(s)	297, 444, 465
BsrI	ACTGG	3 cut(s)	405, 540, 545
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	5 cut(s)	180, 336, 564, 756, 771
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	2 cut(s)	54, 427
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	576
BstAFI	CTTAAG	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	162, 192
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	409, 612
BstKTI	GATC	5 cut(s)	183, 339, 567, 759, 774
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	5 cut(s)	180, 336, 564, 756, 771
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 455, 695
BstNSI	RCATGY	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	314, 461
BsuRI	GGCC	2 cut(s)	282, 496
BtsCI	GGATG	2 cut(s)	409, 612
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	162, 192
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	142, 237
CviAII	CATG	8 cut(s)	88, 165, 284, 460, 481, 507, 511, 769
CviQI	GTAC	2 cut(s)	142, 237
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	5 cut(s)	182, 338, 566, 758, 773
DpnII	GATC	5 cut(s)	180, 336, 564, 756, 771
EaeI	YGGCCR	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	8 cut(s)	91, 168, 287, 463, 484, 510, 514, 772
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	8 cut(s)	87, 164, 283, 459, 480, 506, 510, 768
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	303, 450
FokI	GGATG	2 cut(s)	416, 619
Fsp4HI	GCNGC	2 cut(s)	303, 450
FspBI	CTAG	2 cut(s)	44, 257
GluI	GCNGC	2 cut(s)	303, 450
HaeIII	GGCC	2 cut(s)	282, 496
HgaI	GACGC	1 cut(s)	584
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	8 cut(s)	91, 168, 287, 463, 484, 510, 514, 772
HinfI	GANTC	2 cut(s)	104, 484
HphI	GGTGA	2 cut(s)	284, 766
Hpy166II	GTNNAC	2 cut(s)	423, 436
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	97, 178
Hpy8I	GTNNAC	2 cut(s)	423, 436
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	2 cut(s)	54, 427
HpyCH4V	TGCA	7 cut(s)	91, 302, 377, 436, 449, 510, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 455, 695
HpyF3I	CTNAG	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	8 cut(s)	91, 168, 287, 463, 484, 510, 514, 772
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	180, 336, 564, 756, 771
Lsp1109I	GCAGC	2 cut(s)	314, 461
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	44, 257
MaeIII	GTNAC	2 cut(s)	3, 680
MalI	GATC	5 cut(s)	182, 338, 566, 758, 773
MboI	GATC	5 cut(s)	180, 336, 564, 756, 771
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	2 cut(s)	327, 378
MnlI	CCTC	4 cut(s)	22, 223, 262, 361
Mph1103I	ATGCAT	1 cut(s)	512
MseI	TTAA	2 cut(s)	17, 128
MslI	CAYNNNNRTG	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	413, 455, 695
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	5 cut(s)	180, 336, 564, 756, 771
NlaIII	CATG	8 cut(s)	91, 168, 287, 463, 484, 510, 514, 772
NlaIV	GGNNCC	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	512
NspI	RCATGY	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	674
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	104, 484
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	2 cut(s)	304, 451
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	704
RsaI	GTAC	2 cut(s)	143, 238
RsaNI	GTAC	2 cut(s)	142, 237
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	2 cut(s)	17, 128
SatI	GCNGC	2 cut(s)	303, 450
Sau3AI	GATC	5 cut(s)	180, 336, 564, 756, 771
Sau96I	GGNCC	1 cut(s)	280
ScaI	AGTACT	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	8 cut(s)	10, 23, 85, 454, 592, 628, 682, 691
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	621
SfuI	TTCGAA	1 cut(s)	674
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	327, 378
SsiI	CCGC	2 cut(s)	305, 478
SspMI	CTAG	2 cut(s)	44, 257
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	2 cut(s)	54, 427
TaqI	TCGA	1 cut(s)	674
TasI	AATT	2 cut(s)	327, 378
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	104, 484
Tru1I	TTAA	2 cut(s)	17, 128
Tru9I	TTAA	2 cut(s)	17, 128
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	302, 449
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	4 cut(s)	303, 490, 634, 726
TspRI	CASTG	1 cut(s)	432
Van91I	CCANNNNNTGG	1 cut(s)	774
Vha464I	CTTAAG	1 cut(s)	16
VneI	GTGCAC	1 cut(s)	434
XceI	RCATGY	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XspI	CTAG	2 cut(s)	44, 257
ZrmI	AGTACT	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.