RchiOBHm_Chr5g0053941

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002192
Physical Location & Seq
Forward (+)
56289085 .. 56290567
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33117

Sequence Viewer

Length: 993 bp
ATGCAGTTCCAGAGAAAAATGGCTTGCTGTAATAATCTTATTTTCCTCTCTCTCTTCCTCTGCCTCACCTTCTCTTCCTTAGCCTACAGCAACAACAACGACAATGAAACCAAAAATGGAAATGGTGCTCACAACCTTCGGTCCAAGTCTCTAGTCCTGGTCAAGATATGGTGCTTGCTGTTGGTCTTTGTTGGGACTTTTGCAGCAGGAATGTCACCTTACTTCTTAAGGTGGAACGAGGCATTCTTGGTTCTAGGCACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCACTCATGCACTTCCTGAGTGATTCAGACAGGACTTTTCAGGGCTTAACTGAAAAGGAGTACCCTTTTGCCTATATGCTGGCATGTATGGGGTTCTTGATCACTATGCTTGCTGATTGTGTTGTTTCTTATGTGTATGGTAAGCAGGAGGGTAGTACTACTGACCCAGAAGTTCTAGGAAAGGAAGAGGCTCACAAGGGCCATGATACTCACCACATTGCGGCGGTTGGTTCATTCAGGGACACAATTCTGTTGATCGTAGCCTTGTGCTTCCACTCTTTCTTTGAGGGGATTGCAATTGGGATTGCCAAGACAAAACTGGATGCTTGGAAAGCCTTGTGGACAGTGTGTGTGCACAAAATCATTGCAGCTATTGCCATGAGCATTGCCCTTCTACGCATGATTCCAAATCGGCCATTCATATCATGCATGGCATATGCTTTTGTATTTGCCATTTCCAGTCCAGTTGGTGTAGGAGTTGGGATCATAATAGACGCCAAAACCCAAGGTGCCACAGCAGATTGGATGTTTGCTATTTCTACGGCTTTGGCTTGTGGAGTGTTCATCTATGTGTCGATAAATCATTTGCTTTCGAAAGGTTACACAGCTCAAAATGCAGTCTCTGTTGATAAACCCCACTACAAGTTTTTGGCTGTTGTTTTTGGTGTTGGGATGATCTCTGTTGCCATGATCTGGGACTAA

Protein Analysis

330

Amino Acids

36.16

Weight (kDa)

8.01

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 53 - 325 5.3e-47 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 984
AciI CCGC 2 cut(s) 512, 515
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 1 cut(s) 704
AcyI GRCGYC 1 cut(s) 786
AfaI GTAC 2 cut(s) 353, 448
AfiI CCNNNNNNNGG 2 cut(s) 511, 984
AflII CTTAAG 1 cut(s) 226
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 2 cut(s) 662, 899
AluI AGCT 2 cut(s) 662, 899
Alw21I GWGCWC 2 cut(s) 130, 648
Alw26I GTCTC 2 cut(s) 153, 916
Alw44I GTGCAC 1 cut(s) 644
AlwI GGATC 1 cut(s) 782
AlwNI CAGNNNCTG 1 cut(s) 914
AoxI GGCC 2 cut(s) 490, 704
ApaLI GTGCAC 1 cut(s) 644
ApeKI GCWGC 2 cut(s) 203, 659
AspS9I GGNCC 2 cut(s) 141, 490
AsuHPI GGTGA 3 cut(s) 58, 207, 494
AsuII TTCGAA 1 cut(s) 884
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 648
BanI GGYRCC 1 cut(s) 800
Bbv12I GWGCWC 2 cut(s) 130, 648
BbvI GCAGC 2 cut(s) 215, 671
BceAI ACGGC 1 cut(s) 849
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 153, 916
BfaI CTAG 3 cut(s) 152, 254, 467
BfmI CTRYAG 1 cut(s) 85
BfrI CTTAAG 1 cut(s) 226
BisI GCNGC 3 cut(s) 204, 513, 660
BlsI GCNGC 3 cut(s) 205, 514, 661
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 141, 490
BmiI GGNNCC 1 cut(s) 802
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 604
Bpu10I CCTNAGC 1 cut(s) 79
Bpu14I TTCGAA 1 cut(s) 884
BsaHI GRCGYC 1 cut(s) 786
BsaJI CCNNGG 1 cut(s) 796
Bsc4I CCNNNNNNNGG 2 cut(s) 511, 984
Bse1I ACTGG 3 cut(s) 615, 750, 755
Bse3DI GCAATG 3 cut(s) 507, 654, 675
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 796
BseGI GGATG 3 cut(s) 619, 822, 969
BseLI CCNNNNNNNGG 2 cut(s) 511, 984
BseMI GCAATG 3 cut(s) 507, 654, 675
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 3 cut(s) 615, 750, 755
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 2 cut(s) 215, 671
BshFI GGCC 2 cut(s) 492, 706
BshNI GGYRCC 1 cut(s) 800
BsiHKAI GWGCWC 2 cut(s) 130, 648
BslFI GGGAC 2 cut(s) 208, 545
BslI CCNNNNNNNGG 2 cut(s) 511, 984
BsmAI GTCTC 2 cut(s) 153, 916
BsmFI GGGAC 2 cut(s) 208, 545
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 2 cut(s) 492, 706
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 2 cut(s) 130, 648
Bsp143I GATC 5 cut(s) 390, 546, 774, 966, 981
BspACI CCGC 2 cut(s) 512, 515
BspANI GGCC 2 cut(s) 492, 706
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 802
BspPI GGATC 1 cut(s) 782
BspT104I TTCGAA 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 800
BspTI CTTAAG 1 cut(s) 226
BsrDI GCAATG 3 cut(s) 507, 654, 675
BsrI ACTGG 3 cut(s) 615, 750, 755
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 5 cut(s) 390, 546, 774, 966, 981
BssNI GRCGYC 1 cut(s) 786
BssT1I CCWWGG 1 cut(s) 796
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 264, 637
Bst6I CTCTTC 3 cut(s) 59, 79, 471
BstACI GRCGYC 1 cut(s) 786
BstAFI CTTAAG 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 4 cut(s) 25, 176, 372, 402
BstDEI CTNAG 2 cut(s) 79, 308
BstF5I GGATG 3 cut(s) 619, 822, 969
BstKTI GATC 5 cut(s) 393, 549, 777, 969, 984
BstMAI GTCTC 2 cut(s) 153, 916
BstMBI GATC 5 cut(s) 390, 546, 774, 966, 981
BstMWI GCNNNNNNNGC 3 cut(s) 623, 665, 905
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 215, 671
BsuRI GGCC 2 cut(s) 492, 706
BtsCI GGATG 3 cut(s) 619, 822, 969
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 4 cut(s) 25, 176, 372, 402
CaiI CAGNNNCTG 1 cut(s) 914
Cfr13I GGNCC 2 cut(s) 141, 490
CseI GACGC 1 cut(s) 794
Csp6I GTAC 2 cut(s) 352, 447
CviAII CATG 8 cut(s) 298, 375, 494, 670, 691, 717, 721, 979
CviQI GTAC 2 cut(s) 352, 447
DdeI CTNAG 2 cut(s) 79, 308
DpnI GATC 5 cut(s) 392, 548, 776, 968, 983
DpnII GATC 5 cut(s) 390, 546, 774, 966, 981
EaeI YGGCCR 1 cut(s) 704
Eam1104I CTCTTC 3 cut(s) 59, 79, 471
EarI CTCTTC 3 cut(s) 59, 79, 471
Eco130I CCWWGG 1 cut(s) 796
Eco47I GGWCC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 796
EcoT22I ATGCAT 1 cut(s) 722
ErhI CCWWGG 1 cut(s) 796
FaeI CATG 8 cut(s) 301, 378, 497, 673, 694, 720, 724, 982
FaqI GGGAC 2 cut(s) 208, 545
FatI CATG 8 cut(s) 297, 374, 493, 669, 690, 716, 720, 978
FauNDI CATATG 1 cut(s) 727
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 204, 513, 660
FokI GGATG 3 cut(s) 626, 829, 976
Fsp4HI GCNGC 3 cut(s) 204, 513, 660
FspBI CTAG 3 cut(s) 152, 254, 467
GluI GCNGC 3 cut(s) 204, 513, 660
HaeIII GGCC 2 cut(s) 492, 706
HgaI GACGC 1 cut(s) 794
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 8 cut(s) 301, 378, 497, 673, 694, 720, 724, 982
HinfI GANTC 2 cut(s) 314, 694
HphI GGTGA 3 cut(s) 58, 207, 494
Hpy166II GTNNAC 2 cut(s) 633, 646
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 10, 163, 307, 388
Hpy8I GTNNAC 2 cut(s) 633, 646
HpyAV CCTTC 3 cut(s) 79, 146, 692
HpyCH4III ACNGT 2 cut(s) 264, 637
HpyCH4V TGCA 8 cut(s) 4, 203, 301, 587, 646, 659, 720, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 623, 665, 905
HpyF3I CTNAG 2 cut(s) 79, 308
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 8 cut(s) 301, 378, 497, 673, 694, 720, 724, 982
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 5 cut(s) 390, 546, 774, 966, 981
Lsp1109I GCAGC 2 cut(s) 215, 671
LweI GCATC 1 cut(s) 604
MaeI CTAG 3 cut(s) 152, 254, 467
MaeIII GTNAC 2 cut(s) 213, 890
MalI GATC 5 cut(s) 392, 548, 776, 968, 983
MboI GATC 5 cut(s) 390, 546, 774, 966, 981
MboII GAAGA 3 cut(s) 46, 66, 488
MfeI CAATTG 1 cut(s) 588
MhlI GDGCHC 2 cut(s) 130, 648
MluCI AATT 2 cut(s) 537, 588
MnlI CCTC 7 cut(s) 56, 68, 74, 232, 433, 472, 571
Mph1103I ATGCAT 1 cut(s) 722
MseI TTAA 2 cut(s) 227, 338
MslI CAYNNNNRTG 1 cut(s) 860
MspCI CTTAAG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 158
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 623, 665, 905
NdeI CATATG 1 cut(s) 727
NdeII GATC 5 cut(s) 390, 546, 774, 966, 981
NlaIII CATG 8 cut(s) 301, 378, 497, 673, 694, 720, 724, 982
NlaIV GGNNCC 1 cut(s) 802
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 1 cut(s) 378
NspV TTCGAA 1 cut(s) 884
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 314, 694
PflMI CCANNNNNTGG 1 cut(s) 984
PkrI GCNGC 3 cut(s) 205, 514, 661
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 802
PspPI GGNCC 2 cut(s) 141, 490
PstNI CAGNNNCTG 1 cut(s) 914
RsaI GTAC 2 cut(s) 353, 448
RsaNI GTAC 2 cut(s) 352, 447
RseI CAYNNNNRTG 1 cut(s) 860
SaqAI TTAA 2 cut(s) 227, 338
SatI GCNGC 3 cut(s) 204, 513, 660
Sau3AI GATC 5 cut(s) 390, 546, 774, 966, 981
Sau96I GGNCC 2 cut(s) 141, 490
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 2 cut(s) 130, 648
SetI ASST 8 cut(s) 71, 138, 220, 233, 664, 802, 892, 901
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 884
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 2 cut(s) 537, 588
SsiI CCGC 2 cut(s) 512, 515
SspMI CTAG 3 cut(s) 152, 254, 467
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 2 cut(s) 264, 637
TaqI TCGA 2 cut(s) 866, 884
TaqII GACCGA 1 cut(s) 129
TasI AATT 2 cut(s) 537, 588
TatI WGTACW 1 cut(s) 446
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 2 cut(s) 314, 694
Tru1I TTAA 2 cut(s) 227, 338
Tru9I TTAA 2 cut(s) 227, 338
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 2 cut(s) 203, 659
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 4 cut(s) 120, 513, 700, 844
TspRI CASTG 1 cut(s) 642
Van91I CCANNNNNTGG 1 cut(s) 984
Vha464I CTTAAG 1 cut(s) 226
VneI GTGCAC 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 141
XceI RCATGY 1 cut(s) 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XspI CTAG 3 cut(s) 152, 254, 467
ZrmI AGTACT 1 cut(s) 448
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.