Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

15852689 .. 15855037

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G241000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCTCCTCCTCCTCTGCCTCGCCCACTTCTCCTCTGTTTTCTCATCCTCCTCTGCCTCACCATCCCCGCCTTAGCCCACAGCGGCCACCCCGACGACGAAAACAACAACGAACCCGCCACAGACGACATCGAACCAGGTCCAGACCTTCGTTCAAAGCCTCTGATACTGGCCAAGATTTGGTGCCTGATTATAATCTTTGTTGCGACCTTCATACCTGGAGTTTCGCCTTACTTTTTCAAGTGGTCTGAATGGTTCTTGGTTTTGGGTACGCAGTTTGCTGGGGGTGTGTTTCTGGGTACGGCTCTGATGCACTTTCTGAGTGATGCCGACGAGACTTTCAAGGACTTGACTGAAAAAGAGTACCCTTTTGCGTTTATGTTGGCTTGTGGGGGGTTCTTGCTCACCATGCTTGCTGATTGTGTGATTTCGTATGTTTTTGAGAAGAACAAAGGTGTTGGGTCTGCTCCCGATCTTGAGCTGCGAGGGAGTGCTGAGCAGGGGAAGGGTGGTCAAAATGGCAATGAGAGCCATAACCACTTCGCGAACGTGGCTGTTGCAAATGTTAGCTCACTTGGGGATAGCATCTTGTTGATTGTAGCATTGTGTTTCCACTCTGTCTTTGAGGGCATTGCAATTGGAGTCGCTGACACTAAACGCGATGCTTGGAAAGCCTTATGGACAATTACTCTGCACAAGGTATTTGCAGCCATTGCCATGGGCATTGCTCTCCTTCGAATGATGCCAAACCGCCCCTTCTTATCGTGCGCTGCCTATGCTTTTGCATTCGCTATATCAAGTCCTATTGGAGTGGCCATCGGAATCCTAATAGATGCGACAACCCAAGGAGCTGTGGCAGATTGGATATTCGCGATTTCAATGGGTATAGCATGTGGAGTGTTCATTTATGTAGCAGTAAACCATCTATTGGCGAAAGGTTATAAACCCGAGAAAGCAGTTTCCATCGACAAACCCCATTACAAGTTTTTGGCAGTTTTGTTGGGTGTCGGGGTAATAGCCGTCGTGATGATTTGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

348

Amino Acids

37.42

Weight (kDa)

5.55

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	194, 942
AccB1I	GGYRCC	1 cut(s)	183
AccB7I	CCANNNNNTGG	2 cut(s)	180, 928
AccII	CGCG	3 cut(s)	545, 660, 872
AciI	CCGC	4 cut(s)	69, 84, 117, 751
AcoI	YGGCCR	3 cut(s)	85, 171, 813
AfaI	GTAC	3 cut(s)	271, 301, 365
AfiI	CCNNNNNNNGG	2 cut(s)	180, 928
AgsI	TTSAA	4 cut(s)	156, 241, 343, 879
AjnI	CCWGG	2 cut(s)	136, 217
AluBI	AGCT	3 cut(s)	481, 570, 851
AluI	AGCT	3 cut(s)	481, 570, 851
Alw26I	GTCTC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	947
AoxI	GGCC	3 cut(s)	85, 171, 813
ApeKI	GCWGC	3 cut(s)	481, 707, 770
AspLEI	GCGC	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	52, 397
AsuII	TTCGAA	1 cut(s)	736
AvaI	CYCGRG	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	140
BalI	TGGCCA	2 cut(s)	173, 815
BanI	GGYRCC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	468, 719, 757
BccI	CCATC	4 cut(s)	71, 824, 930, 971
BceAI	ACGGC	2 cut(s)	318, 1004
BciT130I	CCWGG	2 cut(s)	138, 219
BcoDI	GTCTC	1 cut(s)	329
BisI	GCNGC	4 cut(s)	85, 482, 708, 771
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	4 cut(s)	86, 483, 709, 772
Bme1390I	CCNGG	2 cut(s)	138, 219
Bme18I	GGWCC	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	947
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	6, 185
BmrFI	CCNGG	2 cut(s)	138, 219
BmsI	GCATC	6 cut(s)	300, 316, 594, 652, 732, 823
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	736
BpuEI	CTTGAG	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	717, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 928
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	4 cut(s)	529, 630, 711, 723
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	138, 219
BseDI	CCNNGG	2 cut(s)	717, 844
BseGI	GGATG	2 cut(s)	45, 63
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	180, 928
BseMI	GCAATG	4 cut(s)	529, 630, 711, 723
BseMII	CTCAG	2 cut(s)	311, 486
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	23, 41
BseXI	GCAGC	3 cut(s)	468, 719, 757
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	677
Bsh1236I	CGCG	3 cut(s)	545, 660, 872
BshFI	GGCC	3 cut(s)	87, 173, 815
BshNI	GGYRCC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	947
BslI	CCNNNNNNNGG	2 cut(s)	180, 928
BsmAI	GTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	785
BsnI	GGCC	3 cut(s)	87, 173, 815
BsoBI	CYCGRG	1 cut(s)	947
Bsp119I	TTCGAA	1 cut(s)	736
Bsp143I	GATC	1 cut(s)	472
Bsp1720I	GCTNAGC	1 cut(s)	495
Bsp19I	CCATGG	1 cut(s)	717
Bsp68I	TCGCGA	2 cut(s)	545, 872
BspACI	CCGC	4 cut(s)	69, 84, 117, 751
BspANI	GGCC	3 cut(s)	87, 173, 815
BspCNI	CTCAG	2 cut(s)	312, 487
BspFNI	CGCG	3 cut(s)	545, 660, 872
BspLI	GGNNCC	2 cut(s)	6, 185
BspT104I	TTCGAA	1 cut(s)	736
BspT107I	GGYRCC	1 cut(s)	183
BsrDI	GCAATG	4 cut(s)	529, 630, 711, 723
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	717, 844
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	2 cut(s)	717, 844
Bst2UI	CCWGG	2 cut(s)	138, 219
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstBI	TTCGAA	1 cut(s)	736
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	73, 320, 495
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	2 cut(s)	45, 63
BstFNI	CGCG	3 cut(s)	545, 660, 872
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	6 cut(s)	409, 528, 551, 671, 713, 776
BstNI	CCWGG	2 cut(s)	138, 219
BstNSI	RCATGY	1 cut(s)	894
BstSCI	CCNGG	2 cut(s)	136, 217
BstUI	CGCG	3 cut(s)	545, 660, 872
BstV1I	GCAGC	3 cut(s)	468, 719, 757
BstXI	CCANNNNNNTGG	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	87, 173, 815
BtgI	CCRYGG	1 cut(s)	717
BtgZI	GCGATG	1 cut(s)	675
BtsCI	GGATG	2 cut(s)	45, 63
BtuMI	TCGCGA	2 cut(s)	545, 872
Cac8I	GCNNGC	1 cut(s)	414
CfoI	GCGC	1 cut(s)	770
Cfr13I	GGNCC	1 cut(s)	140
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	270, 300, 364
CviAII	CATG	3 cut(s)	409, 718, 891
CviQI	GTAC	3 cut(s)	270, 300, 364
DdeI	CTNAG	3 cut(s)	73, 320, 495
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	3 cut(s)	85, 171, 813
Eco130I	CCWWGG	2 cut(s)	717, 844
Eco47I	GGWCC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	136, 217
EcoT14I	CCWWGG	2 cut(s)	717, 844
ErhI	CCWWGG	2 cut(s)	717, 844
FaeI	CATG	3 cut(s)	412, 721, 894
FatI	CATG	3 cut(s)	408, 717, 890
FauI	CCCGC	2 cut(s)	76, 124
Fnu4HI	GCNGC	4 cut(s)	85, 482, 708, 771
FokI	GGATG	2 cut(s)	32, 50
Fsp4HI	GCNGC	4 cut(s)	85, 482, 708, 771
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	4 cut(s)	85, 482, 708, 771
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	87, 173, 815
HhaI	GCGC	1 cut(s)	770
Hin1II	CATG	3 cut(s)	412, 721, 894
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HinfI	GANTC	2 cut(s)	642, 822
HphI	GGTGA	2 cut(s)	52, 397
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	5 cut(s)	165, 250, 309, 321, 821
Hpy188III	TCNNGA	6 cut(s)	143, 470, 476, 544, 871, 1024
Hpy8I	GTNNAC	1 cut(s)	919
Hpy99I	CGWCG	4 cut(s)	98, 101, 335, 1025
HpyAV	CCTTC	5 cut(s)	158, 220, 499, 743, 766
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	6 cut(s)	313, 560, 635, 694, 707, 785
HpyF10VI	GCNNNNNNNGC	6 cut(s)	409, 528, 551, 671, 713, 776
HpyF3I	CTNAG	3 cut(s)	73, 320, 495
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	3 cut(s)	412, 721, 894
HspAI	GCGC	1 cut(s)	768
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	3 cut(s)	10, 472, 848
Lsp1109I	GCAGC	3 cut(s)	468, 719, 757
LweI	GCATC	6 cut(s)	300, 316, 594, 652, 732, 823
MabI	ACCWGGT	1 cut(s)	136
MaeII	ACGT	1 cut(s)	549
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	1 cut(s)	457
MfeI	CAATTG	1 cut(s)	636
MlsI	TGGCCA	2 cut(s)	173, 815
MluCI	AATT	2 cut(s)	636, 684
MluNI	TGGCCA	2 cut(s)	173, 815
MlyI	GAGTC	1 cut(s)	651
Mox20I	TGGCCA	2 cut(s)	173, 815
MscI	TGGCCA	2 cut(s)	173, 815
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	2 cut(s)	173, 815
MspA1I	CMGCKG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	138, 219
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	785
MvaI	CCWGG	2 cut(s)	138, 219
MvnI	CGCG	3 cut(s)	545, 660, 872
MwoI	GCNNNNNNNGC	6 cut(s)	409, 528, 551, 671, 713, 776
NcoI	CCATGG	1 cut(s)	717
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	3 cut(s)	412, 721, 894
NlaIV	GGNNCC	2 cut(s)	6, 185
NruI	TCGCGA	2 cut(s)	545, 872
NspI	RCATGY	1 cut(s)	894
NspV	TTCGAA	1 cut(s)	736
PctI	GAATGC	1 cut(s)	785
PfeI	GAWTC	1 cut(s)	822
PflMI	CCANNNNNTGG	2 cut(s)	180, 928
PkrI	GCNGC	4 cut(s)	86, 483, 709, 772
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
PsiI	TTATAA	2 cut(s)	194, 942
Psp6I	CCWGG	2 cut(s)	136, 217
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	136, 217
PspN4I	GGNNCC	2 cut(s)	6, 185
PspPI	GGNCC	1 cut(s)	140
RruI	TCGCGA	2 cut(s)	545, 872
RsaI	GTAC	3 cut(s)	271, 301, 365
RsaNI	GTAC	3 cut(s)	270, 300, 364
RseI	CAYNNNNRTG	1 cut(s)	716
SatI	GCNGC	4 cut(s)	85, 482, 708, 771
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	651
ScrFI	CCNGG	2 cut(s)	138, 219
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	6 cut(s)	300, 316, 594, 652, 732, 823
SfuI	TTCGAA	1 cut(s)	736
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	636, 684
SsiI	CCGC	4 cut(s)	69, 84, 117, 751
StyD4I	CCNGG	2 cut(s)	136, 217
StyI	CCWWGG	2 cut(s)	717, 844
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	3 cut(s)	132, 736, 966
TasI	AATT	2 cut(s)	636, 684
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	822
TseI	GCWGC	3 cut(s)	481, 707, 770
TspDTI	ATGAA	2 cut(s)	202, 892
Van91I	CCANNNNNTGG	2 cut(s)	180, 928
VpaK11BI	GGWCC	1 cut(s)	140
XceI	RCATGY	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.