Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Reverse (-)

32555184 .. 32555866

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0284000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAGGTCCATTCAGTCTCGCTCTGCATTGCTTCCCATGCATACTAGGCTAAAACACAAACGCCTTCTGGGAAGTACTAAGCTGCTTTGGCTTTCCACCAATGAACCTATCAAGCTTGCTTCACAGAGCCAACAACTCCATCTCTCACTGGGAACCAGTTGCAGGGCCATGCACAATTACAATGCCATTGTTCTTGGTGTCACTCCCCCTGCCAAGTCCGGCGACATCTCGGTCCTCCTTCAATGGGATTCTTCTTTTCGCCTACGTGTTTTCGAATTTCATTGTGCCGAATCTCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006464 GO:0006470 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019538 GO:0019866 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0042578 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

100

Amino Acids

11.33

Weight (kDa)

10.29

Isoelectric Point (pI)

69.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	162, 244
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	2 cut(s)	82, 115
AluI	AGCT	2 cut(s)	82, 115
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	6, 165, 232
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	6, 232
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	6, 232
BmgT120I	GGNCC	3 cut(s)	6, 165, 232
BmiI	GGNNCC	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	158
Bpu14I	TTCGAA	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 244
Bse1I	ACTGG	2 cut(s)	153, 156
Bse3DI	GCAATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	162, 244
BseMI	GCAATG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	153, 156
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	162, 244
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	273
BspANI	GGCC	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	154
BspT104I	TTCGAA	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	153, 156
BstBAI	YACGTR	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 46, 88
BstV1I	GCAGC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	3 cut(s)	6, 165, 232
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	2 cut(s)	37, 169
CviJI	RGCY	6 cut(s)	49, 82, 91, 115, 129, 167
CviKI_1	RGCY	6 cut(s)	49, 82, 91, 115, 129, 167
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	78
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	6, 232
EcoT22I	ATGCAT	1 cut(s)	42
FaeI	CATG	2 cut(s)	40, 172
FaiI	YATR	3 cut(s)	38, 42, 170
FatI	CATG	2 cut(s)	36, 168
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	40, 172
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	248, 290
HpaII	CCGG	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	74, 248
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	26, 40, 162, 172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 46, 88
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	40, 172
LpnPI	CCDG	6 cut(s)	53, 134, 148, 169, 222, 232
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	243
MluCI	AATT	2 cut(s)	175, 275
MnlI	CCTC	1 cut(s)	245
Mph1103I	ATGCAT	1 cut(s)	42
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	37, 46, 88
NlaIII	CATG	2 cut(s)	40, 172
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	248, 290
PkrI	GCNGC	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	3 cut(s)	6, 165, 232
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	83
Sau96I	GGNCC	3 cut(s)	6, 165, 232
ScaI	AGTACT	1 cut(s)	76
SetI	ASST	5 cut(s)	8, 84, 109, 117, 268
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	2 cut(s)	6, 232
Sse9I	AATT	2 cut(s)	175, 275
SspMI	CTAG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	273
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	2 cut(s)	175, 275
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	248, 290
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	117, 269
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	6, 232
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	76
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.