Rh5BG365300

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002192
Physical Location & Seq
Forward (+)
57259942 .. 57261578
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG365300.1

Sequence Viewer

Length: 1023 bp
ATGGCTCGACCACTCCTCCTCCTCCTCCTACACCTCATCCTCCTCTCCCTCGCCCTCGCCGCCTCCGCCCACAGCGGCCACGGCGATGAAGACGAGGAACCAACCGCCGCAGACGACACTGACCTCCGCGCCAGGCCTCTGATCATGGCAAAGATTTGGTGTTTGATAGTTATCTTCTTCGGAACTTTCATCCCTGGAGTTTCCCCTTACTTCTTCAAATGGAATCAGGGTTTCTTGGTTCTGGGGACCCAGTTTGCTGGAGGCGTGTTTCTGGGGACGGCTCTGATGCATTTTCTGAGTGACGCTGATGAGACTTTTAAGGACTTGACTAAAAAAGAGTACCCTTTTCCGTTCATGTTGGCTTGTGCTGGGTTCTTGTTGACAATGCTGGCTGACTGTGTCATTTCCTATGTGTTTTCCAAGAAAAGGGACGCTGGCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTGAACATGAAAAAGGCGTCACAGCATCACAGTGTCAGAGCCATAACCACTTTGCAAACGCATCTGTCGCAAATGTTAGTTCACTTGGGGATAGTGTCCTGTTGATAGTAGCCCTGTGTTTCCACTCTGTCTTTGAGGGCATTGCAATTGGAGTTGCTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACAATTTCTCTTCATAAGGTATTTGCAGCTATTGCCATGGGAATAGCTCTTCTGCGAATGATGCCTAACCGTCCCTTCTTATCGTGCGCTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGCGTGGCCATTGGAATCATAATAGATGCGACAACCCAAGGTGCTGTGGCAGATTGGATATTTGCGATTTCAATGGGTCTGGCATGTGGTGTGTTTATATATGTAGCTGTAAACCATTTACTGGCGAAGGGTTACACACCCGATAAGGCAGTTTCTGTGGACAAACCCCATTACAAGTTTTTGGCAGTGTCGTTGGGCGTTGGCGTTATAGCTGTTGTGATGATTTGGGACACTTGA

Protein Analysis

340

Amino Acids

36.5

Weight (kDa)

5.84

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 50 - 335 4.5e-53 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 907
AccII CGCG 1 cut(s) 129
AciI CCGC 6 cut(s) 60, 66, 75, 105, 108, 127
AcoI YGGCCR 2 cut(s) 76, 792
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 426, 907
AgsI TTSAA 4 cut(s) 217, 473, 777, 858
AjnI CCWGG 2 cut(s) 131, 193
AluBI AGCT 5 cut(s) 638, 689, 707, 893, 998
AluI AGCT 5 cut(s) 638, 689, 707, 893, 998
Alw26I GTCTC 3 cut(s) 305, 449, 623
AlwNI CAGNNNCTG 1 cut(s) 941
AoxI GGCC 3 cut(s) 76, 134, 792
ApeKI GCWGC 2 cut(s) 686, 749
AspLEI GCGC 2 cut(s) 131, 749
AspS9I GGNCC 1 cut(s) 246
AvaII GGWCC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 698, 736
BceAI ACGGC 2 cut(s) 97, 294
BciT130I CCWGG 2 cut(s) 133, 195
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 3 cut(s) 305, 449, 623
BisI GCNGC 5 cut(s) 60, 76, 108, 687, 750
BlsI GCNGC 5 cut(s) 61, 77, 109, 688, 751
Bme1390I CCNGG 2 cut(s) 133, 195
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 3 cut(s) 99, 247, 248
BmrFI CCNGG 2 cut(s) 133, 195
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 6 cut(s) 276, 503, 539, 631, 711, 802
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 2 cut(s) 216, 279
BpuEI CTTGAG 2 cut(s) 444, 473
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 4 cut(s) 79, 193, 696, 823
BsaXI ACNNNNNCTCC 2 cut(s) 30, 33
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 907
Bse1I ACTGG 2 cut(s) 250, 912
Bse3DI GCAATG 1 cut(s) 609
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 2 cut(s) 133, 195
BseDI CCNNGG 4 cut(s) 79, 193, 696, 823
BseGI GGATG 2 cut(s) 36, 189
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 426, 907
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 2 cut(s) 287, 618
BseNI ACTGG 2 cut(s) 250, 912
BseRI GAGGAG 5 cut(s) 5, 8, 11, 14, 32
BseXI GCAGC 2 cut(s) 698, 736
BseYI CCCAGC 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 78, 136, 794
BslFI GGGAC 4 cut(s) 259, 289, 443, 717
BslI CCNNNNNNNGG 2 cut(s) 426, 907
BsmAI GTCTC 3 cut(s) 305, 449, 623
BsmFI GGGAC 4 cut(s) 259, 289, 443, 717
BsnI GGCC 3 cut(s) 78, 136, 794
Bsp143I GATC 2 cut(s) 141, 448
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 6 cut(s) 60, 66, 75, 105, 108, 127
BspANI GGCC 3 cut(s) 78, 136, 794
BspCNI CTCAG 2 cut(s) 288, 619
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 99, 247, 248
BspQI GCTCTTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 2 cut(s) 250, 912
BssECI CCNNGG 4 cut(s) 79, 193, 696, 823
BssMI GATC 2 cut(s) 141, 448
BssNI GRCGYC 1 cut(s) 486
BssT1I CCWWGG 2 cut(s) 696, 823
Bst2UI CCWGG 2 cut(s) 133, 195
Bst4CI ACNGT 3 cut(s) 398, 501, 731
Bst6I CTCTTC 2 cut(s) 675, 714
BstACI GRCGYC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 390, 436
BstDEI CTNAG 2 cut(s) 296, 627
BstDSI CCRYGG 2 cut(s) 79, 696
BstF5I GGATG 2 cut(s) 36, 189
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 2 cut(s) 131, 749
BstKTI GATC 2 cut(s) 144, 451
BstMAI GTCTC 3 cut(s) 305, 449, 623
BstMBI GATC 2 cut(s) 141, 448
BstMWI GCNNNNNNNGC 8 cut(s) 59, 65, 81, 536, 650, 692, 721, 755
BstNI CCWGG 2 cut(s) 133, 195
BstNSI RCATGY 1 cut(s) 873
BstSCI CCNGG 2 cut(s) 131, 193
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 698, 736
BstV2I GAAGAC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 257
BsuRI GGCC 3 cut(s) 78, 136, 794
BtgI CCRYGG 2 cut(s) 79, 696
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 36, 189
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 3 cut(s) 117, 506, 978
Cac8I GCNNGC 2 cut(s) 390, 436
CaiI CAGNNNCTG 1 cut(s) 941
CfoI GCGC 2 cut(s) 131, 749
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 3 cut(s) 311, 440, 475
Csp6I GTAC 1 cut(s) 340
CviAII CATG 5 cut(s) 145, 355, 476, 697, 870
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 296, 627
DpnI GATC 2 cut(s) 143, 450
DpnII GATC 2 cut(s) 141, 448
EaeI YGGCCR 2 cut(s) 76, 792
Eam1104I CTCTTC 2 cut(s) 675, 714
EarI CTCTTC 2 cut(s) 675, 714
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 696, 823
Eco147I AGGCCT 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 131, 193
EcoT14I CCWWGG 2 cut(s) 696, 823
EcoT22I ATGCAT 1 cut(s) 291
ErhI CCWWGG 2 cut(s) 696, 823
FaeI CATG 5 cut(s) 148, 358, 479, 700, 873
FaqI GGGAC 4 cut(s) 259, 289, 443, 717
FatI CATG 5 cut(s) 144, 354, 475, 696, 869
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 5 cut(s) 60, 76, 108, 687, 750
FokI GGATG 2 cut(s) 23, 176
Fsp4HI GCNGC 5 cut(s) 60, 76, 108, 687, 750
GlaI GCGC 2 cut(s) 130, 748
GluI GCNGC 5 cut(s) 60, 76, 108, 687, 750
GsaI CCCAGC 1 cut(s) 372
GsuI CTGGAG 2 cut(s) 216, 279
HaeIII GGCC 3 cut(s) 78, 136, 794
HgaI GACGC 3 cut(s) 311, 440, 475
HhaI GCGC 2 cut(s) 131, 749
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 5 cut(s) 148, 358, 479, 700, 873
Hin6I GCGC 2 cut(s) 129, 747
HinP1I GCGC 2 cut(s) 129, 747
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 3 cut(s) 223, 457, 801
Hpy166II GTNNAC 4 cut(s) 381, 551, 898, 946
Hpy188I TCNGA 6 cut(s) 141, 182, 285, 297, 448, 507
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 4 cut(s) 381, 551, 898, 946
HpyAV CCTTC 2 cut(s) 745, 907
HpyCH4III ACNGT 3 cut(s) 398, 501, 731
HpyCH4V TGCA 5 cut(s) 289, 524, 614, 686, 764
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 65, 81, 536, 650, 692, 721, 755
HpyF3I CTNAG 2 cut(s) 296, 627
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 5 cut(s) 148, 358, 479, 700, 873
HspAI GCGC 2 cut(s) 129, 747
KflI GGGWCCC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 141, 448
LguI GCTCTTC 1 cut(s) 714
Lsp1109I GCAGC 2 cut(s) 698, 736
LweI GCATC 6 cut(s) 276, 503, 539, 631, 711, 802
MaeIII GTNAC 3 cut(s) 299, 487, 917
MalI GATC 2 cut(s) 143, 450
MboI GATC 2 cut(s) 141, 448
MboII GAAGA 6 cut(s) 101, 166, 169, 205, 662, 701
MfeI CAATTG 1 cut(s) 615
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 2 cut(s) 615, 663
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 1 cut(s) 451
Mox20I TGGCCA 1 cut(s) 794
Mph1103I ATGCAT 1 cut(s) 291
MscI TGGCCA 1 cut(s) 794
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 84, 499
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 133, 195
MunI CAATTG 1 cut(s) 615
MvaI CCWGG 2 cut(s) 133, 195
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 8 cut(s) 59, 65, 81, 536, 650, 692, 721, 755
NcoI CCATGG 1 cut(s) 696
NdeII GATC 2 cut(s) 141, 448
NlaIII CATG 5 cut(s) 148, 358, 479, 700, 873
NlaIV GGNNCC 3 cut(s) 99, 247, 248
NmuCI GTSAC 2 cut(s) 299, 487
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 1 cut(s) 873
PceI AGGCCT 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 714
PfeI GAWTC 2 cut(s) 223, 801
PflFI GACNNNGTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 907
PkrI GCNGC 5 cut(s) 61, 77, 109, 688, 751
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 131, 193
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 131, 193
PspN4I GGNNCC 3 cut(s) 99, 247, 248
PspPI GGNCC 1 cut(s) 246
PspPPI RGGWCCY 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 941
PsyI GACNNNGTC 1 cut(s) 398
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 2 cut(s) 84, 499
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 5 cut(s) 60, 76, 108, 687, 750
Sau3AI GATC 2 cut(s) 141, 448
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 133, 195
SetI ASST 9 cut(s) 36, 126, 640, 681, 691, 709, 829, 895, 1000
SfaNI GCATC 6 cut(s) 276, 503, 539, 631, 711, 802
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 2 cut(s) 84, 499
SmlI CTYRAG 2 cut(s) 452, 459
SmoI CTYRAG 2 cut(s) 452, 459
Sse9I AATT 2 cut(s) 615, 663
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 6 cut(s) 60, 66, 75, 105, 108, 127
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 131, 193
StyI CCWWGG 2 cut(s) 696, 823
TaaI ACNGT 3 cut(s) 398, 501, 731
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 615, 663
TauI GCSGC 3 cut(s) 62, 78, 110
TfiI GAWTC 2 cut(s) 223, 801
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 3 cut(s) 124, 506, 978
TseFI GTSAC 2 cut(s) 299, 487
TseI GCWGC 2 cut(s) 686, 749
Tsp45I GTSAC 2 cut(s) 299, 487
TspDTI ATGAA 5 cut(s) 102, 178, 343, 492, 662
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 3 cut(s) 124, 506, 978
Tth111I GACNNNGTC 1 cut(s) 398
Van91I CCANNNNNTGG 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 246
XceI RCATGY 1 cut(s) 873
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.