FvH4_3g29450

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002192
Physical Location & Seq
Forward (+)
22521699 .. 22523186
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29450.t1

Sequence Viewer

Length: 975 bp
ATGGCTTGCTGTAAGAATCTTCTCTTCCTCTCTCTATTCCTCTGCCTCGCTTTCTCTTCCTTGGCCTACAGCAACAACAATGACAATGAAACCGAAAAAGGCAACGGTGCTCCCAACCTTCGGTCTAAGTCTCTAGTCCTGGTCAAGATATGGTGCTTGCTGTTGGTATTTGTTGGGACTTTTGCAGCTGGAATGTCACCTTACTTCTTAAGGTGGAACGAGGCGTTCTTGGTTCTCGGCACGCAGTTTGCTGGTGGTGTGTTTCTGGGAACAGCTCTCATGCATTTCCTGAAAGATTCAGACGAGTCCTTTCAGGGCTTGACTGAAAAGGAGTACCCTTTCGCCTATATGCTGGCATGTGTGGGGTTCTTGATCACTATGCTTGCTGATTGTGTTGTTTCTTATGTGTATGGTAAGCAGAAAAGCAGTACTAGTGATCCAGAAGTTCAAGGGAAGGAAGAGGCTCACAAGGGCCATGATACTCACCACATTGCAGCAGTTGGTTCATTCGGGGACACAATTCTGTTGGTCGTAGCCTTGTGCTTCCACTCTTTCTTTGAGGGCATTGCAATTGGGATAGCCAAGACAAAACCGGATGCTTGGAAGGCCTTGTGGACAGTGTGTCTGCACAAAATCATTGCAGCTATTGCCATGAGCATTGCTCTCCTTCGCATGATTCCCAGTCGTCCCTTCATATCATGTATGGCATATGCTTTTGTATTTGCCGTTTCCAGTCCAGTTGGTGTTGGAGTTGGGATCATAATAGATGCCACAACTCAAGGTGCCACAGCAGATTGGATGTTTGCTATTTCTATAGGTTTGGCTTGTGGGGTGTTCATCTTTGTGTCAGTAAACCATTTGCTTGCAAAAGGTTACACAGCTCAAAATGCGATCTCTGTTGATAAACCCCAGTACAAGTTTTTGGCTGTTGTTTTTGGTATAGGGGTTATCTCTGTTGCCATGATCTGGGACTAA

Protein Analysis

325

Amino Acids

35.06

Weight (kDa)

6.69

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 47 - 319 1.9e-47 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 782
AccB7I CCANNNNNTGG 1 cut(s) 966
AclWI GGATC 2 cut(s) 431, 764
AfaI GTAC 3 cut(s) 335, 430, 914
AfiI CCNNNNNNNGG 2 cut(s) 120, 966
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 1 cut(s) 449
AhdI GACNNNNNGTC 1 cut(s) 621
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 4 cut(s) 188, 275, 644, 881
AluI AGCT 4 cut(s) 188, 275, 644, 881
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 2 cut(s) 431, 764
AoxI GGCC 3 cut(s) 63, 472, 606
ApeKI GCWGC 3 cut(s) 185, 494, 641
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 189, 476
BanI GGYRCC 1 cut(s) 782
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 3 cut(s) 197, 506, 653
BceAI ACGGC 1 cut(s) 710
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 135
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 134, 432
BfmI CTRYAG 2 cut(s) 67, 813
BfrI CTTAAG 1 cut(s) 208
BisI GCNGC 3 cut(s) 186, 495, 642
BlsI GCNGC 3 cut(s) 187, 496, 643
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 140
BmeRI GACNNNNNGTC 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 2 cut(s) 675, 904
BmsI GCATC 2 cut(s) 586, 757
BmuI ACTGGG 2 cut(s) 675, 904
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpuEI CTTGAG 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 966
Bse1I ACTGG 4 cut(s) 681, 732, 737, 910
Bse3DI GCAATG 4 cut(s) 489, 564, 636, 657
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 601, 804
BseLI CCNNNNNNNGG 2 cut(s) 120, 966
BseMI GCAATG 4 cut(s) 489, 564, 636, 657
BseNI ACTGG 4 cut(s) 681, 732, 737, 910
BseXI GCAGC 3 cut(s) 197, 506, 653
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 3 cut(s) 65, 474, 608
BshNI GGYRCC 1 cut(s) 782
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 3 cut(s) 190, 527, 672
BslI CCNNNNNNNGG 2 cut(s) 120, 966
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 3 cut(s) 190, 527, 672
BsnI GGCC 3 cut(s) 65, 474, 608
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 5 cut(s) 372, 436, 756, 891, 963
BspANI GGCC 3 cut(s) 65, 474, 608
BspLI GGNNCC 1 cut(s) 784
BspPI GGATC 2 cut(s) 431, 764
BspT107I GGYRCC 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 208
BsrDI GCAATG 4 cut(s) 489, 564, 636, 657
BsrI ACTGG 4 cut(s) 681, 732, 737, 910
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 5 cut(s) 372, 436, 756, 891, 963
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 107, 619
Bst6I CTCTTC 3 cut(s) 29, 61, 453
BstAFI CTTAAG 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 6 cut(s) 7, 158, 242, 354, 384, 864
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 601, 804
BstKTI GATC 5 cut(s) 375, 439, 759, 894, 966
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 5 cut(s) 372, 436, 756, 891, 963
BstMWI GCNNNNNNNGC 3 cut(s) 605, 647, 887
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 2 cut(s) 67, 813
BstV1I GCAGC 3 cut(s) 197, 506, 653
BsuRI GGCC 3 cut(s) 65, 474, 608
BtsCI GGATG 2 cut(s) 601, 804
BtsIMutI CAGTG 1 cut(s) 624
Cac8I GCNNGC 6 cut(s) 7, 158, 242, 354, 384, 864
Cfr13I GGNCC 1 cut(s) 472
Csp6I GTAC 3 cut(s) 334, 429, 913
CviAII CATG 7 cut(s) 280, 357, 476, 652, 673, 699, 961
CviQI GTAC 3 cut(s) 334, 429, 913
DdeI CTNAG 1 cut(s) 126
DpnI GATC 5 cut(s) 374, 438, 758, 893, 965
DpnII GATC 5 cut(s) 372, 436, 756, 891, 963
DriI GACNNNNNGTC 1 cut(s) 621
Eam1104I CTCTTC 3 cut(s) 29, 61, 453
Eam1105I GACNNNNNGTC 1 cut(s) 621
EarI CTCTTC 3 cut(s) 29, 61, 453
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 7 cut(s) 283, 360, 479, 655, 676, 702, 964
FaqI GGGAC 3 cut(s) 190, 527, 672
FatI CATG 7 cut(s) 279, 356, 475, 651, 672, 698, 960
FauNDI CATATG 1 cut(s) 709
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 3 cut(s) 186, 495, 642
FokI GGATG 2 cut(s) 608, 811
Fsp4HI GCNGC 3 cut(s) 186, 495, 642
FspBI CTAG 2 cut(s) 134, 432
GluI GCNGC 3 cut(s) 186, 495, 642
HaeIII GGCC 3 cut(s) 65, 474, 608
HapII CCGG 1 cut(s) 593
Hin1II CATG 7 cut(s) 283, 360, 479, 655, 676, 702, 964
HinfI GANTC 4 cut(s) 16, 296, 305, 676
HpaII CCGG 1 cut(s) 593
HphI GGTGA 2 cut(s) 189, 476
Hpy166II GTNNAC 2 cut(s) 615, 853
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 4 cut(s) 145, 289, 370, 440
Hpy8I GTNNAC 2 cut(s) 615, 853
HpyAV CCTTC 5 cut(s) 128, 448, 598, 677, 700
HpyCH4III ACNGT 2 cut(s) 107, 619
HpyCH4V TGCA 7 cut(s) 185, 283, 494, 569, 628, 641, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 605, 647, 887
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 7 cut(s) 283, 360, 479, 655, 676, 702, 964
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 5 cut(s) 372, 436, 756, 891, 963
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 3 cut(s) 197, 506, 653
LweI GCATC 2 cut(s) 586, 757
MaeI CTAG 2 cut(s) 134, 432
MaeIII GTNAC 2 cut(s) 195, 872
MalI GATC 5 cut(s) 374, 438, 758, 893, 965
MboI GATC 5 cut(s) 372, 436, 756, 891, 963
MboII GAAGA 4 cut(s) 11, 16, 48, 470
MfeI CAATTG 1 cut(s) 570
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 2 cut(s) 519, 570
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 6 cut(s) 38, 50, 56, 214, 454, 553
Mph1103I ATGCAT 1 cut(s) 285
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 842
MspA1I CMGCKG 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 208
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 605, 647, 887
NdeI CATATG 1 cut(s) 709
NdeII GATC 5 cut(s) 372, 436, 756, 891, 963
NlaIII CATG 7 cut(s) 283, 360, 479, 655, 676, 702, 964
NlaIV GGNNCC 1 cut(s) 784
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 360
PceI AGGCCT 1 cut(s) 608
PfeI GAWTC 3 cut(s) 16, 296, 676
PflMI CCANNNNNTGG 1 cut(s) 966
PkrI GCNGC 3 cut(s) 187, 496, 643
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 3 cut(s) 335, 430, 914
RsaNI GTAC 3 cut(s) 334, 429, 913
RseI CAYNNNNRTG 1 cut(s) 842
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 186, 495, 642
Sau3AI GATC 5 cut(s) 372, 436, 756, 891, 963
Sau96I GGNCC 1 cut(s) 472
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 2 cut(s) 586, 757
SfcI CTRYAG 2 cut(s) 67, 813
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 2 cut(s) 208, 777
SmoI CTYRAG 2 cut(s) 208, 777
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 2 cut(s) 519, 570
SseBI AGGCCT 1 cut(s) 608
SspMI CTAG 2 cut(s) 134, 432
StuI AGGCCT 1 cut(s) 608
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 107, 619
TaqII GACCGA 1 cut(s) 111
TasI AATT 2 cut(s) 519, 570
TatI WGTACW 2 cut(s) 428, 912
TfiI GAWTC 3 cut(s) 16, 296, 676
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 3 cut(s) 185, 494, 641
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 4 cut(s) 102, 495, 682, 826
TspRI CASTG 1 cut(s) 624
Van91I CCANNNNNTGG 1 cut(s) 966
Vha464I CTTAAG 1 cut(s) 208
XceI RCATGY 1 cut(s) 360
XspI CTAG 2 cut(s) 134, 432
ZrmI AGTACT 1 cut(s) 430
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.