Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002192

Physical Location & Seq

Genomic Coordinates Forward (+)

57828422 .. 57830046

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG380200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTCGACCACTCCTCCTCTTCCTCCTCCAGCTCATCCTCCTCTCCCTCGCCCTCGCCGCCTCCGCCCACAGCGGCCACGGCGATGAAGACGAGGAACCAACCGCCGCAGACGACACTGACCTCCGCGCCAGGCCTCTGATCATGGCAAAGATTTGGTGTTTGATAGTTATCTTCTTCGGAACTTTCATCCCTGGAGTTTCCCCTTACTTCTTCAAATGGAATCAGGGTTTCTTGGTCCTCGGGACCCAGTTTGCTGGGGGCGTGTTTCTGGGGACGGCTCTGATGCATTTTCTGAGTGATGCTGATGAGACTTTTAAGGACTTGACTGACAAAGAGTACCCTTTTGCGTTCATGTTGGCTTGTGCTGGGTTCTTGTTGACAATGCTGGCTGACTGTATCATTTCCTATGTGTTTTCCAAGAAAAGGGACGCTGGCTCTGTTTCTGATCTTGAGACTCAAGGGAGTGTTGAACATGAAAAAGGCGTCACAGCATCACAGTGTCAGAGCCATAACCACTTTGCAAACGCATCTGTCGCAAATGTTAGTTCACTTGGGGATAGTGTCCTGTTGATAGTAGCCCTGTGTTTCCACTCTGTCTTTGAGGGCATTGCAATTGGAGTTGCTGAGACTAAAGCTGATGCTTGGAAAGCCTTATGGACAATTTCTCTTCATAAGGTATTTGCAGCTATTGCCATGGGAATAGCTCTTCTGCGAATGATGCCTAACCGTCCCTTCTTATCGTGCGCTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGCGTGGCCATTGGAATCATAATAGATGCGACAACCCAAGGTGCTGTGGCAGATTGGATATTTGCGATTTCAATGGGTCTGGCATGTGGTGTGTTTATATATGTAGCTGTAAACCATTTACTGGCGAAGGGTTACACACCCGAGAAGGCAGTTTCTGTGGACAAACCCCATTACAAGTTTTTGGCAGTGTCGTTGGGCGTTGGCGTTATAGCTGTTGTGATGATTTGGGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

340

Amino Acids

36.52

Weight (kDa)

5.5

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	50 - 335	2.7e-53	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55910
fragaria_vesca	FvH4_3g29440 FvH4_3g29450
malus_domestica	MD00G1099400.v1.1 MD03G1185100.v1.1 MD11G1201400.v1.1 MD11G1201500.v1.1
prunus_persica	Prupe.4G240600_v2.0.a1 Prupe.4G241000_v2.0.a1
pyrus_communis	pycom03g13820 pycom03g13830 pycom11g17400
rosa_chinensis	RchiOBHm_Chr5g0053881 RchiOBHm_Chr5g0053891 RchiOBHm_Chr5g0053941
rosa_laevigata	RLG00000034911
rosa_multiflora	Rmu_sc0003165.1_g000007 Rmu_sc0012421.1_g000003 Rmu_sc0023670.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026700 Rroxscaffold_1G00026720 Rroxscaffold_1G00026730
rosa_rugosa	Rorug05G0284000 Rorug05G0284100 Rorug05G0284200 Rorug05G0284600
rosa_samantha	Rh5AG353700 Rh5AG353800 Rh5AG353900 Rh5BG365300 Rh5BG365500 Rh5BG365600 Rh5BG365700 Rh5CG390400 Rh5CG390500 Rh5DG380200 Rh5DG380400 Rh5DG380500 Rh5DG380600
rosa_wichuraiana	Rw0G002090 Rw0G002100 Rw0G002110 Rw5G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccII	CGCG	1 cut(s)	129
AciI	CCGC	6 cut(s)	60, 66, 75, 105, 108, 127
AcoI	YGGCCR	2 cut(s)	76, 792
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	426, 907
AgsI	TTSAA	4 cut(s)	217, 473, 777, 858
AjnI	CCWGG	2 cut(s)	131, 193
AluBI	AGCT	6 cut(s)	34, 638, 689, 707, 893, 998
AluI	AGCT	6 cut(s)	34, 638, 689, 707, 893, 998
Alw26I	GTCTC	3 cut(s)	305, 449, 623
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	2 cut(s)	242, 926
AoxI	GGCC	3 cut(s)	76, 134, 792
ApeKI	GCWGC	2 cut(s)	686, 749
AspLEI	GCGC	2 cut(s)	131, 749
AspS9I	GGNCC	2 cut(s)	238, 246
AvaI	CYCGRG	2 cut(s)	242, 926
AvaII	GGWCC	2 cut(s)	238, 246
BalI	TGGCCA	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	698, 736
BceAI	ACGGC	2 cut(s)	97, 294
BciT130I	CCWGG	2 cut(s)	133, 195
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	3 cut(s)	305, 449, 623
BisI	GCNGC	5 cut(s)	60, 76, 108, 687, 750
BlsI	GCNGC	5 cut(s)	61, 77, 109, 688, 751
Bme1390I	CCNGG	2 cut(s)	133, 195
Bme18I	GGWCC	2 cut(s)	238, 246
BmeT110I	CYCGRG	2 cut(s)	242, 926
BmgT120I	GGNCC	2 cut(s)	238, 246
BmiI	GGNNCC	3 cut(s)	99, 247, 248
BmrFI	CCNGG	2 cut(s)	133, 195
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	7 cut(s)	276, 292, 503, 539, 631, 711, 802
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	2 cut(s)	14, 216
BpuEI	CTTGAG	2 cut(s)	444, 473
BsaBI	GATNNNNATC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	5 cut(s)	79, 193, 241, 696, 823
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 907
Bse1I	ACTGG	2 cut(s)	250, 912
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	133, 195
BseDI	CCNNGG	5 cut(s)	79, 193, 241, 696, 823
BseGI	GGATG	2 cut(s)	36, 189
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	426, 907
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	287, 618
BseNI	ACTGG	2 cut(s)	250, 912
BseRI	GAGGAG	4 cut(s)	5, 8, 17, 32
BseXI	GCAGC	2 cut(s)	698, 736
BseYI	CCCAGC	2 cut(s)	257, 368
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	78, 136, 794
BsiHKCI	CYCGRG	2 cut(s)	242, 926
BslFI	GGGAC	4 cut(s)	259, 289, 443, 717
BslI	CCNNNNNNNGG	2 cut(s)	426, 907
BsmAI	GTCTC	3 cut(s)	305, 449, 623
BsmFI	GGGAC	4 cut(s)	259, 289, 443, 717
BsnI	GGCC	3 cut(s)	78, 136, 794
BsoBI	CYCGRG	2 cut(s)	242, 926
Bsp143I	GATC	2 cut(s)	141, 448
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	6 cut(s)	60, 66, 75, 105, 108, 127
BspANI	GGCC	3 cut(s)	78, 136, 794
BspCNI	CTCAG	2 cut(s)	288, 619
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	99, 247, 248
BspQI	GCTCTTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	250, 912
BssECI	CCNNGG	5 cut(s)	79, 193, 241, 696, 823
BssMI	GATC	2 cut(s)	141, 448
BssNI	GRCGYC	1 cut(s)	486
BssT1I	CCWWGG	2 cut(s)	696, 823
Bst2UI	CCWGG	2 cut(s)	133, 195
Bst4CI	ACNGT	3 cut(s)	398, 501, 731
Bst6I	CTCTTC	3 cut(s)	26, 675, 714
BstACI	GRCGYC	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	390, 436
BstDEI	CTNAG	2 cut(s)	296, 627
BstDSI	CCRYGG	2 cut(s)	79, 696
BstF5I	GGATG	2 cut(s)	36, 189
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	131, 749
BstKTI	GATC	2 cut(s)	144, 451
BstMAI	GTCTC	3 cut(s)	305, 449, 623
BstMBI	GATC	2 cut(s)	141, 448
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 65, 81, 536, 650, 692, 721, 755
BstNI	CCWGG	2 cut(s)	133, 195
BstNSI	RCATGY	1 cut(s)	873
BstSCI	CCNGG	2 cut(s)	131, 193
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	698, 736
BstV2I	GAAGAC	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	78, 136, 794
BtgI	CCRYGG	2 cut(s)	79, 696
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	36, 189
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	3 cut(s)	117, 506, 978
Cac8I	GCNNGC	2 cut(s)	390, 436
CaiI	CAGNNNCTG	1 cut(s)	941
CfoI	GCGC	2 cut(s)	131, 749
Cfr13I	GGNCC	2 cut(s)	238, 246
CseI	GACGC	2 cut(s)	440, 475
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	5 cut(s)	145, 355, 476, 697, 870
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	296, 627
DpnI	GATC	2 cut(s)	143, 450
DpnII	GATC	2 cut(s)	141, 448
EaeI	YGGCCR	2 cut(s)	76, 792
Eam1104I	CTCTTC	3 cut(s)	26, 675, 714
EarI	CTCTTC	3 cut(s)	26, 675, 714
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	696, 823
Eco147I	AGGCCT	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	238, 246
Eco88I	CYCGRG	2 cut(s)	242, 926
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	131, 193
EcoT14I	CCWWGG	2 cut(s)	696, 823
EcoT22I	ATGCAT	1 cut(s)	291
ErhI	CCWWGG	2 cut(s)	696, 823
FaeI	CATG	5 cut(s)	148, 358, 479, 700, 873
FaqI	GGGAC	4 cut(s)	259, 289, 443, 717
FatI	CATG	5 cut(s)	144, 354, 475, 696, 869
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	60, 76, 108, 687, 750
FokI	GGATG	2 cut(s)	23, 176
Fsp4HI	GCNGC	5 cut(s)	60, 76, 108, 687, 750
GlaI	GCGC	2 cut(s)	130, 748
GluI	GCNGC	5 cut(s)	60, 76, 108, 687, 750
GsaI	CCCAGC	2 cut(s)	261, 372
GsuI	CTGGAG	2 cut(s)	14, 216
HaeIII	GGCC	3 cut(s)	78, 136, 794
HgaI	GACGC	2 cut(s)	440, 475
HhaI	GCGC	2 cut(s)	131, 749
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	5 cut(s)	148, 358, 479, 700, 873
Hin6I	GCGC	2 cut(s)	129, 747
HinP1I	GCGC	2 cut(s)	129, 747
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	3 cut(s)	223, 457, 801
Hpy166II	GTNNAC	4 cut(s)	381, 551, 898, 946
Hpy188I	TCNGA	6 cut(s)	141, 182, 285, 297, 448, 507
Hpy188III	TCNNGA	2 cut(s)	244, 452
Hpy8I	GTNNAC	4 cut(s)	381, 551, 898, 946
HpyAV	CCTTC	3 cut(s)	745, 907, 925
HpyCH4III	ACNGT	3 cut(s)	398, 501, 731
HpyCH4V	TGCA	5 cut(s)	289, 524, 614, 686, 764
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 65, 81, 536, 650, 692, 721, 755
HpyF3I	CTNAG	2 cut(s)	296, 627
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	5 cut(s)	148, 358, 479, 700, 873
HspAI	GCGC	2 cut(s)	129, 747
KflI	GGGWCCC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	141, 448
LguI	GCTCTTC	1 cut(s)	714
Lsp1109I	GCAGC	2 cut(s)	698, 736
LweI	GCATC	7 cut(s)	276, 292, 503, 539, 631, 711, 802
MaeIII	GTNAC	2 cut(s)	487, 917
MalI	GATC	2 cut(s)	143, 450
MboI	GATC	2 cut(s)	141, 448
MboII	GAAGA	7 cut(s)	13, 101, 166, 169, 205, 662, 701
MfeI	CAATTG	1 cut(s)	615
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	2 cut(s)	615, 663
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	1 cut(s)	451
Mox20I	TGGCCA	1 cut(s)	794
Mph1103I	ATGCAT	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	84, 499
Msp20I	TGGCCA	1 cut(s)	794
MspA1I	CMGCKG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	133, 195
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	133, 195
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	8 cut(s)	59, 65, 81, 536, 650, 692, 721, 755
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	2 cut(s)	141, 448
NlaIII	CATG	5 cut(s)	148, 358, 479, 700, 873
NlaIV	GGNNCC	3 cut(s)	99, 247, 248
NmuCI	GTSAC	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	873
PceI	AGGCCT	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	223, 801
PflMI	CCANNNNNTGG	1 cut(s)	907
PkrI	GCNGC	5 cut(s)	61, 77, 109, 688, 751
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	131, 193
PspFI	CCCAGC	2 cut(s)	257, 368
PspGI	CCWGG	2 cut(s)	131, 193
PspN4I	GGNNCC	3 cut(s)	99, 247, 248
PspPI	GGNCC	2 cut(s)	238, 246
PspPPI	RGGWCCY	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	941
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	84, 499
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	5 cut(s)	60, 76, 108, 687, 750
Sau3AI	GATC	2 cut(s)	141, 448
Sau96I	GGNCC	2 cut(s)	238, 246
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	133, 195
SetI	ASST	9 cut(s)	36, 126, 640, 681, 691, 709, 829, 895, 1000
SfaNI	GCATC	7 cut(s)	276, 292, 503, 539, 631, 711, 802
SinI	GGWCC	2 cut(s)	238, 246
SmiMI	CAYNNNNRTG	2 cut(s)	84, 499
SmlI	CTYRAG	2 cut(s)	452, 459
SmoI	CTYRAG	2 cut(s)	452, 459
Sse9I	AATT	2 cut(s)	615, 663
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	6 cut(s)	60, 66, 75, 105, 108, 127
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	131, 193
StyI	CCWWGG	2 cut(s)	696, 823
TaaI	ACNGT	3 cut(s)	398, 501, 731
TaqI	TCGA	1 cut(s)	7
TasI	AATT	2 cut(s)	615, 663
TauI	GCSGC	3 cut(s)	62, 78, 110
TfiI	GAWTC	2 cut(s)	223, 801
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	124, 506, 978
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	2 cut(s)	686, 749
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	5 cut(s)	102, 178, 343, 492, 662
TspRI	CASTG	3 cut(s)	124, 506, 978
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	2 cut(s)	238, 246
XceI	RCATGY	1 cut(s)	873
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.