AT1G65280

Protein of unknown function (DUF3752)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
24245122 .. 24248762
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65280.1

Sequence Viewer

Length: 1767 bp
ATGGGTAAGCACTGGAAGAGAGATTCTGATTCGGGAGACGATACTCCATCGTCAGCAACATCGTCCTCCTCGTCATACAGCTCAGACGAATCTGATTCATCTTCTAGAAAGTGGCGGAAGAAGCAAAAGGAGCGGCGGAAAAGTGACGGAGGAAGTTATGAGAGAGAGAAACGGAGGAAGAGAGAGAAGGAGAGGAAGAGGAAGAAGATTGAGAGGAAGGAGAGAAAGAGGAGGGATATGAAGAAGAAGAAGAAGACTAAGAAGCGTGAATATGAGTCTGATACTGAGTCTTACTCTGGTTCTGATTCATTCTCTGATCAAGAGGATGATCCTGAAACTGTGGTTAAAGAGATGCTTTTGGAGTTTCCTAATGTTGGCAATGATTTGAAACAGCTTTTGAAAATGATTGATGACGGACAAGCGGTTGATATAAAGGGTATTTCCGAGAGCACTTTGAAGAAGAGGTTGAAGAAGTTGTTTCTTTCTTTGAAGTTAAAGGAACGTGGGGATAGAGTCTTTTTATTACCACCAGGTGCTTCTCCTTCTTTAGATGTAGTGGGGCATCTTATTAAAGGCGGCGAAGAAGATGTTGAGAAAAGCCTTGACGATTCTTCCCCATTGAAGGAAACTGAAAAGGGTTTGGCAGATGAGAACGGTTTGGGATCGAATTCAGCTGATGATGTTACTGGTCCAAAGAAAAGGGTGATTGGACCTGCAATGCCATCAGCTGAGTTACTTGCTGCAGCAGCTAAGCTAACAGAAGCTCAAGCTGAACTTAGAGAAGCTGAGCTAGAAGAAGATTCAGAATATTTCATTGGACCTGCTCCACCAGCTGTTGTTGCAGAAGTTGCATCGTCGAACGAGGCAGAGCGATTTGAAGAGGTGACACGGATTATGGAAGCTGACGCTAATAGTCCATACGACGTCTTAGGAGTGAATCACAATATGGCTGCTGATAATATGAAGAAAAGGTACTGGAAGCTGTCGCTTCTTGTTCACCCAGACAAATGTTCTCATCCCCAAGCCCAGGAAGCTTTTGTTTTACTGAATAAAGCTTTCAAAGAATTACAAGATCCAGAAAAGAGAAAAGCAATGGATGACAAGATTAAACTTAAGGAGGAACAAGAGGCATTTAAGGTTGAATTACGTTCAATGCAAGAAGCAGCACAGTGGAGAAGATCACAAGGCATATCAATGGAAGGGGATGCAGAGTTGTTGGCAGCAACCGAGGTTAAACCTGAACCTAAAAGAGATGAGTGGATGACCACTCTGCCTCCTGAAAGAAAGGTTGGAGTGGCCGTGCAGCAATCAACCACGTTTAGTAGAAATGCTAGAGAAGGACGCGGAGACACTACAGCGTGGACTGATACTCCTATGGACAAAGCTGAAAGAGCAAAGATGAATTACTTGGAGGCATACAACAAGGCGAGTGCGCTTGCATCAAACGAAGGGGAAAATATGAAAAGAAGCATGGATGCTGAGCTTGTAGACAAGTATAACAAAGAGAAAAGAGCAAAGTCTCTGGTAGAGAAGCACAGAGAAGACTCTTCTTCTTCTTCAAGCCGTCTGAAAAAGAAGAAGAAATTGTCTTCATCCAAAGAGAAAACCGAGAAGGACGAGTGGGTAGGGAAACATCCGTGGAAGCCATGGGACCGTGAAAACGACCTTACTGCCGGGAGACAGAATGTGAAACTTGATGCCGATGGTATGGCTGAAGGTTTGGCTTCCAAGTTTTCTTCTGGGAATTTCCAAAGAAGCTTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

588

Amino Acids

66.5

Weight (kDa)

8.66

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 306 - 366 3.3e-18 DnaJ domain
DUF3752 PF12572 425 - 579 3.6e-25 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 927
Acc36I ACCTGC 2 cut(s) 721, 829
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 1488
AccII CGCG 1 cut(s) 1344
AciI CCGC 6 cut(s) 115, 133, 136, 422, 576, 1344
AclWI GGATC 3 cut(s) 323, 670, 1067
AcoI YGGCCR 1 cut(s) 1296
AcsI RAATTY 2 cut(s) 667, 1744
AcuI CTGAAG 1 cut(s) 1734
AcyI GRCGYC 1 cut(s) 924
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 1 cut(s) 974
AfiI CCNNNNNNNGG 3 cut(s) 374, 622, 1027
AflII CTTAAG 1 cut(s) 1112
AjnI CCWGG 2 cut(s) 529, 1026
AjuI GAANNNNNNNTTGG 4 cut(s) 798, 830, 1272, 1304
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 4 cut(s) 30, 1341, 1524, 1672
AlwI GGATC 3 cut(s) 323, 670, 1067
AoxI GGCC 1 cut(s) 1296
ApeKI GCWGC 7 cut(s) 740, 743, 746, 950, 1163, 1220, 1303
ApoI RAATTY 2 cut(s) 667, 1744
AspLEI GCGC 1 cut(s) 1435
AspS9I GGNCC 4 cut(s) 689, 710, 818, 1651
AsuC2I CCSGG 1 cut(s) 1675
AsuHPI GGTGA 3 cut(s) 715, 895, 989
AvaII GGWCC 4 cut(s) 689, 710, 818, 1651
BarI GAAGNNNNNNTAC 2 cut(s) 956, 988
BbsI GAAGAC 3 cut(s) 260, 1548, 1581
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 7 cut(s) 727, 755, 758, 937, 1175, 1232, 1315
BccI CCATC 3 cut(s) 55, 730, 1697
BceAI ACGGC 2 cut(s) 1283, 1548
BcgI CGANNNNNNTGC 2 cut(s) 1652, 1686
BciT130I CCWGG 2 cut(s) 531, 1028
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 1675
BcoDI GTCTC 4 cut(s) 30, 1341, 1524, 1672
BfaI CTAG 3 cut(s) 105, 791, 1332
BfmI CTRYAG 2 cut(s) 741, 1353
BfrI CTTAAG 1 cut(s) 1112
BfuAI ACCTGC 2 cut(s) 721, 829
BisI GCNGC 9 cut(s) 134, 577, 741, 744, 747, 951, 1164, 1221, 1304
BlpI GCTNAGC 3 cut(s) 750, 786, 1479
BlsI GCNGC 9 cut(s) 135, 578, 742, 745, 748, 952, 1165, 1222, 1305
Bme1390I CCNGG 3 cut(s) 531, 1028, 1675
Bme18I GGWCC 4 cut(s) 689, 710, 818, 1651
BmgT120I GGNCC 4 cut(s) 689, 710, 818, 1651
BmiI GGNNCC 1 cut(s) 1652
BmrFI CCNGG 3 cut(s) 531, 1028, 1675
BmsI GCATC 7 cut(s) 342, 571, 860, 1195, 1448, 1465, 1687
BpiI GAAGAC 3 cut(s) 260, 1548, 1581
BplI GAGNNNNNCTC 2 cut(s) 278, 310
Bpu1102I GCTNAGC 3 cut(s) 750, 786, 1479
BpuEI CTTGAG 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 1675
BsaHI GRCGYC 1 cut(s) 924
BsaJI CCNNGG 4 cut(s) 1026, 1227, 1637, 1646
BsaXI ACNNNNNCTCC 6 cut(s) 1258, 1284, 1288, 1314, 1354, 1384
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 622, 1027
Bse1I ACTGG 3 cut(s) 17, 691, 980
Bse3DI GCAATG 3 cut(s) 385, 723, 1098
BseBI CCWGG 2 cut(s) 531, 1028
BseDI CCNNGG 4 cut(s) 1026, 1227, 1637, 1646
BseGI GGATG 8 cut(s) 331, 1015, 1102, 1210, 1266, 1480, 1592, 1633
BseLI CCNNNNNNNGG 3 cut(s) 374, 622, 1027
BseMI GCAATG 3 cut(s) 385, 723, 1098
BseMII CTCAG 5 cut(s) 96, 276, 720, 777, 1470
BseNI ACTGG 3 cut(s) 17, 691, 980
BseRI GAGGAG 2 cut(s) 58, 244
BseXI GCAGC 7 cut(s) 727, 755, 758, 937, 1175, 1232, 1315
BsgI GTGCAG 1 cut(s) 1322
Bsh1236I CGCG 1 cut(s) 1344
BshFI GGCC 1 cut(s) 1298
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 1674
BslFI GGGAC 1 cut(s) 1664
BslI CCNNNNNNNGG 3 cut(s) 374, 622, 1027
BsmAI GTCTC 4 cut(s) 30, 1341, 1524, 1672
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 1664
BsnI GGCC 1 cut(s) 1298
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 5 cut(s) 316, 328, 662, 1072, 1178
Bsp1720I GCTNAGC 3 cut(s) 750, 786, 1479
Bsp19I CCATGG 1 cut(s) 1646
BspACI CCGC 6 cut(s) 115, 133, 136, 422, 576, 1344
BspANI GGCC 1 cut(s) 1298
BspCNI CTCAG 5 cut(s) 95, 277, 721, 778, 1471
BspFNI CGCG 1 cut(s) 1344
BspLI GGNNCC 1 cut(s) 1652
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 2 cut(s) 721, 829
BspPI GGATC 3 cut(s) 323, 670, 1067
BspTI CTTAAG 1 cut(s) 1112
BsrBI CCGCTC 1 cut(s) 133
BsrDI GCAATG 3 cut(s) 385, 723, 1098
BsrI ACTGG 3 cut(s) 17, 691, 980
BssECI CCNNGG 4 cut(s) 1026, 1227, 1637, 1646
BssMI GATC 5 cut(s) 316, 328, 662, 1072, 1178
BssNI GRCGYC 1 cut(s) 924
BssT1I CCWWGG 1 cut(s) 1646
Bst2UI CCWGG 2 cut(s) 531, 1028
Bst4CI ACNGT 4 cut(s) 340, 656, 1170, 1655
Bst6I CTCTTC 6 cut(s) 11, 173, 191, 455, 873, 1552
BstACI GRCGYC 1 cut(s) 924
BstAFI CTTAAG 1 cut(s) 1112
BstAPI GCANNNNNTGC 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 1437
BstDEI CTNAG 9 cut(s) 82, 258, 285, 729, 750, 776, 786, 928, 1479
BstDSI CCRYGG 2 cut(s) 1637, 1646
BstF5I GGATG 8 cut(s) 331, 1015, 1102, 1210, 1266, 1480, 1592, 1633
BstFNI CGCG 1 cut(s) 1344
BstHHI GCGC 1 cut(s) 1435
BstKTI GATC 5 cut(s) 319, 331, 665, 1075, 1181
BstMAI GTCTC 4 cut(s) 30, 1341, 1524, 1672
BstMBI GATC 5 cut(s) 316, 328, 662, 1072, 1178
BstMWI GCNNNNNNNGC 8 cut(s) 121, 130, 746, 830, 839, 848, 1031, 1391
BstNI CCWGG 2 cut(s) 531, 1028
BstSCI CCNGG 3 cut(s) 529, 1026, 1673
BstSFI CTRYAG 2 cut(s) 741, 1353
BstUI CGCG 1 cut(s) 1344
BstV1I GCAGC 7 cut(s) 727, 755, 758, 937, 1175, 1232, 1315
BstV2I GAAGAC 3 cut(s) 260, 1548, 1581
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BsuRI GGCC 1 cut(s) 1298
BtgI CCRYGG 2 cut(s) 1637, 1646
BtsCI GGATG 8 cut(s) 331, 1015, 1102, 1210, 1266, 1480, 1592, 1633
BtsIMutI CAGTG 2 cut(s) 10, 1175
BveI ACCTGC 2 cut(s) 721, 829
Cac8I GCNNGC 1 cut(s) 1437
CfoI GCGC 1 cut(s) 1435
Cfr13I GGNCC 4 cut(s) 689, 710, 818, 1651
CseI GACGC 2 cut(s) 914, 1350
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 1 cut(s) 973
CviAII CATG 2 cut(s) 1471, 1647
CviQI GTAC 1 cut(s) 973
DdeI CTNAG 9 cut(s) 82, 258, 285, 729, 750, 776, 786, 928, 1479
DpnI GATC 5 cut(s) 318, 330, 664, 1074, 1180
DpnII GATC 5 cut(s) 316, 328, 662, 1072, 1178
DraIII CACNNNGTG 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 1296
Eam1104I CTCTTC 6 cut(s) 11, 173, 191, 455, 873, 1552
EarI CTCTTC 6 cut(s) 11, 173, 191, 455, 873, 1552
EciI GGCGGA 2 cut(s) 130, 151
Eco130I CCWWGG 1 cut(s) 1646
Eco47I GGWCC 4 cut(s) 689, 710, 818, 1651
Eco57I CTGAAG 1 cut(s) 1734
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 2 cut(s) 529, 1026
EcoT14I CCWWGG 1 cut(s) 1646
ErhI CCWWGG 1 cut(s) 1646
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 2 cut(s) 1474, 1650
FalI AAGNNNNNCTT 4 cut(s) 339, 371, 759, 791
FaqI GGGAC 1 cut(s) 1664
FatI CATG 2 cut(s) 1470, 1646
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 1 cut(s) 1488
Fnu4HI GCNGC 9 cut(s) 134, 577, 741, 744, 747, 951, 1164, 1221, 1304
FokI GGATG 8 cut(s) 338, 1002, 1109, 1217, 1273, 1487, 1579, 1620
Fsp4HI GCNGC 9 cut(s) 134, 577, 741, 744, 747, 951, 1164, 1221, 1304
FspBI CTAG 3 cut(s) 105, 791, 1332
GlaI GCGC 1 cut(s) 1434
GluI GCNGC 9 cut(s) 134, 577, 741, 744, 747, 951, 1164, 1221, 1304
HaeIII GGCC 1 cut(s) 1298
HapII CCGG 1 cut(s) 1674
HgaI GACGC 2 cut(s) 914, 1350
HhaI GCGC 1 cut(s) 1435
Hin1I GRCGYC 1 cut(s) 924
Hin1II CATG 2 cut(s) 1474, 1650
Hin6I GCGC 1 cut(s) 1433
HinP1I GCGC 1 cut(s) 1433
HindIII AAGCTT 3 cut(s) 1032, 1053, 1756
HpaII CCGG 1 cut(s) 1674
HphI GGTGA 3 cut(s) 715, 895, 989
Hpy166II GTNNAC 3 cut(s) 997, 1362, 1489
Hpy188I TCNGA 9 cut(s) 28, 85, 94, 280, 304, 316, 445, 805, 1569
Hpy188III TCNNGA 6 cut(s) 33, 105, 320, 332, 1076, 1277
Hpy8I GTNNAC 3 cut(s) 997, 1362, 1489
Hpy99I CGWCG 2 cut(s) 859, 926
HpyAV CCTTC 9 cut(s) 181, 211, 552, 616, 1193, 1331, 1442, 1606, 1709
HpyCH4III ACNGT 4 cut(s) 340, 656, 1170, 1655
HpyCH4IV ACGT 4 cut(s) 502, 924, 1147, 1316
HpyCH4V TGCA 8 cut(s) 716, 743, 842, 851, 1156, 1208, 1303, 1439
HpyF10VI GCNNNNNNNGC 8 cut(s) 121, 130, 746, 830, 839, 848, 1031, 1391
HpyF3I CTNAG 9 cut(s) 82, 258, 285, 729, 750, 776, 786, 928, 1479
HpySE526I ACGT 4 cut(s) 502, 924, 1147, 1316
Hsp92I GRCGYC 1 cut(s) 924
Hsp92II CATG 2 cut(s) 1474, 1650
HspAI GCGC 1 cut(s) 1433
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 5 cut(s) 316, 328, 662, 1072, 1178
LmnI GCTCC 2 cut(s) 130, 829
Lsp1109I GCAGC 7 cut(s) 727, 755, 758, 937, 1175, 1232, 1315
LweI GCATC 7 cut(s) 342, 571, 860, 1195, 1448, 1465, 1687
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 3 cut(s) 105, 791, 1332
MaeII ACGT 4 cut(s) 502, 924, 1147, 1316
MaeIII GTNAC 4 cut(s) 143, 682, 732, 883
MalI GATC 5 cut(s) 318, 330, 664, 1074, 1180
MbiI CCGCTC 1 cut(s) 133
MboI GATC 5 cut(s) 316, 328, 662, 1072, 1178
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 6 cut(s) 667, 1064, 1142, 1402, 1583, 1744
MlyI GAGTC 4 cut(s) 284, 296, 522, 1538
MmeI TCCRAC 1 cut(s) 1270
MseI TTAA 7 cut(s) 345, 494, 570, 1107, 1113, 1134, 1233
MslI CAYNNNNRTG 1 cut(s) 1193
MspA1I CMGCKG 3 cut(s) 674, 728, 833
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 1 cut(s) 1674
MspR9I CCNGG 3 cut(s) 531, 1028, 1675
MvaI CCWGG 2 cut(s) 531, 1028
MvnI CGCG 1 cut(s) 1344
MwoI GCNNNNNNNGC 8 cut(s) 121, 130, 746, 830, 839, 848, 1031, 1391
NciI CCSGG 1 cut(s) 1675
NcoI CCATGG 1 cut(s) 1646
NdeII GATC 5 cut(s) 316, 328, 662, 1072, 1178
NlaIII CATG 2 cut(s) 1474, 1650
NlaIV GGNNCC 1 cut(s) 1652
NmuCI GTSAC 2 cut(s) 143, 883
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 8 cut(s) 23, 29, 89, 95, 305, 608, 800, 937
PkrI GCNGC 9 cut(s) 135, 578, 742, 745, 748, 952, 1165, 1222, 1305
PleI GAGTC 4 cut(s) 283, 295, 521, 1538
PpsI GAGTC 4 cut(s) 283, 295, 521, 1538
Psp6I CCWGG 2 cut(s) 529, 1026
PspGI CCWGG 2 cut(s) 529, 1026
PspN4I GGNNCC 1 cut(s) 1652
PspPI GGNCC 4 cut(s) 689, 710, 818, 1651
PstI CTGCAG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 1072
PvuII CAGCTG 3 cut(s) 674, 728, 833
RsaI GTAC 1 cut(s) 974
RsaNI GTAC 1 cut(s) 973
RseI CAYNNNNRTG 1 cut(s) 1193
SaqAI TTAA 7 cut(s) 345, 494, 570, 1107, 1113, 1134, 1233
SatI GCNGC 9 cut(s) 134, 577, 741, 744, 747, 951, 1164, 1221, 1304
Sau3AI GATC 5 cut(s) 316, 328, 662, 1072, 1178
Sau96I GGNCC 4 cut(s) 689, 710, 818, 1651
SchI GAGTC 4 cut(s) 284, 296, 522, 1538
ScrFI CCNGG 3 cut(s) 531, 1028, 1675
SduI GDGCHC 1 cut(s) 452
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 7 cut(s) 342, 571, 860, 1195, 1448, 1465, 1687
SfcI CTRYAG 2 cut(s) 741, 1353
SinI GGWCC 4 cut(s) 689, 710, 818, 1651
SmiMI CAYNNNNRTG 1 cut(s) 1193
SmlI CTYRAG 2 cut(s) 765, 1112
SmoI CTYRAG 2 cut(s) 765, 1112
Sse9I AATT 6 cut(s) 667, 1064, 1142, 1402, 1583, 1744
SsiI CCGC 6 cut(s) 115, 133, 136, 422, 576, 1344
SspI AATATT 1 cut(s) 809
SspMI CTAG 3 cut(s) 105, 791, 1332
StyD4I CCNGG 3 cut(s) 529, 1026, 1673
StyI CCWWGG 1 cut(s) 1646
TaaI ACNGT 4 cut(s) 340, 656, 1170, 1655
TaiI ACGT 4 cut(s) 505, 927, 1150, 1319
TaqI TCGA 2 cut(s) 665, 857
TasI AATT 6 cut(s) 667, 1064, 1142, 1402, 1583, 1744
TauI GCSGC 2 cut(s) 136, 579
TfiI GAWTC 8 cut(s) 23, 29, 89, 95, 305, 608, 800, 937
Tru1I TTAA 7 cut(s) 345, 494, 570, 1107, 1113, 1134, 1233
Tru9I TTAA 7 cut(s) 345, 494, 570, 1107, 1113, 1134, 1233
TscAI CASTG 2 cut(s) 17, 1175
TseFI GTSAC 2 cut(s) 143, 883
TseI GCWGC 7 cut(s) 740, 743, 746, 950, 1163, 1220, 1303
Tsp45I GTSAC 2 cut(s) 143, 883
TspDTI ATGAA 8 cut(s) 87, 254, 297, 802, 977, 1415, 1475, 1581
TspGWI ACGGA 5 cut(s) 162, 187, 429, 904, 1626
TspRI CASTG 2 cut(s) 17, 1175
Vha464I CTTAAG 1 cut(s) 1112
VpaK11BI GGWCC 4 cut(s) 689, 710, 818, 1651
XapI RAATTY 2 cut(s) 667, 1744
XbaI TCTAGA 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 1488
XspI CTAG 3 cut(s) 105, 791, 1332
ZraI GACGTC 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.