Rh5DG565000

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001274
Physical Location & Seq
Forward (+)
87163496 .. 87163657
162 bp
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UTR
Exon/CDS
Intron
Rh5DG565000.1

Sequence Viewer

Length: 162 bp
ATGCGGGAAGCAGCAATGTGGAGAACGATGCAGGGGATTTCCATGGAGGGTGATGAGGAGCTACTGGCAGGTAATGTGAGTGGTGTTAAAGCGGCACGAAAAAGAGATGAGTGGATGACAGAGCTTCCACCGGAGAGGAAACATGGTATGAGTACAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

53

Amino Acids

6.04

Weight (kDa)

5.72

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
AciI CCGC 2 cut(s) 4, 92
AfaI GTAC 1 cut(s) 154
AluBI AGCT 2 cut(s) 61, 124
AluI AGCT 2 cut(s) 61, 124
ApeKI GCWGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 62
BbvI GCAGC 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 2 cut(s) 12, 93
BlsI GCNGC 2 cut(s) 13, 94
BmsI GCATC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 2 cut(s) 4, 92
BspMI ACCTGC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 42
BtsCI GGATG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 153
CviAII CATG 2 cut(s) 43, 143
CviJI RGCY 2 cut(s) 61, 124
CviKI_1 RGCY 2 cut(s) 61, 124
CviQI GTAC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 46, 146
FaiI YATR 3 cut(s) 44, 144, 149
FatI CATG 2 cut(s) 42, 142
Fnu4HI GCNGC 2 cut(s) 12, 93
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 12, 93
GluI GCNGC 2 cut(s) 12, 93
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 46, 146
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 31
Hsp92II CATG 2 cut(s) 46, 146
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 4 cut(s) 17, 50, 54, 144
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 18
MnlI CCTC 3 cut(s) 40, 49, 129
MseI TTAA 1 cut(s) 87
MspI CCGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 42
NlaIII CATG 2 cut(s) 46, 146
PkrI GCNGC 2 cut(s) 13, 94
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 12, 93
SetI ASST 3 cut(s) 63, 73, 126
SfaNI GCATC 1 cut(s) 18
SgeI CNNG 8 cut(s) 17, 44, 55, 77, 81, 108, 143, 155
SsiI CCGC 2 cut(s) 4, 92
StyI CCWWGG 1 cut(s) 42
TatI WGTACW 1 cut(s) 152
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.