Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002723.1

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Reverse (-)

30590 .. 31495

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002723.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgaaacatctagactacacgagtaaccattctgtccgttcatcaatatcctctccttcaagctccgacgattctaaatgcttttccaagacgcgtcatctccaccgtcctgatgacacttccaaaagaggcaaacagaggcaaagggacaaggccaagaaacagaggagcaaaagtgaggcaaggagaatgaaatcgaaagacaacgataagaagaagcagagagcttatgagattgatgatgattctgaatctgggtcttcgagcggtggtgatccgcaagcggttgtgcgagacttgttgaaggaatttcctaatattgggtgcgatttgaagcagcttttgcaagtgatcgatgggggcaaagcggttgacataaatggactagctcagaaacctctgatcaagcctctcaggactctgttcctttccttgaatctcaaggaactgaatcacggaggttttgtactgcctccaaatgttcgtccgactttggaggttgttggttccatcattacgccttctttagataatgttgttcctcctgagagaaggctgatcgatgggggcaaagcggttgacataaatggactagctcagaaacctctgatcaagcctctcaggactctgttcctttccttgaatctcaaggaactgaatcacggaggttttgtactgcctccaaatgttcgtccaactttggaggttgttggttccatgattacgtcttctttagatcatgttgttgctcctgagagaaggccaattggcccggagaagccgtcgccggagatacttgaagctgcagccaaattgagggaggcagaggccgagttaagggaagctgagttggaagaaaaagatgatggggtttttattggacctgctgacggtttgaagaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

301

Amino Acids

33.17

Weight (kDa)

9.27

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	892
AccBSI	CCGCTC	1 cut(s)	267
AccII	CGCG	1 cut(s)	94
AciI	CCGC	5 cut(s)	267, 278, 284, 368, 575
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	2 cut(s)	468, 675
AfiI	CCNNNNNNNGG	4 cut(s)	320, 816, 837, 890
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	7 cut(s)	60, 304, 334, 436, 643, 800, 898
AluBI	AGCT	7 cut(s)	63, 227, 340, 389, 596, 803, 845
AluI	AGCT	7 cut(s)	63, 227, 340, 389, 596, 803, 845
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	4 cut(s)	153, 761, 769, 828
ApeKI	GCWGC	3 cut(s)	337, 803, 806
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	770, 881
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	881
BauI	CACGAG	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	252, 720
BbvI	GCAGC	3 cut(s)	349, 790, 818
BccI	CCATC	4 cut(s)	350, 518, 557, 860
BceAI	ACGGC	1 cut(s)	766
BclI	TGATCA	2 cut(s)	402, 609
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	3 cut(s)	11, 386, 593
BfmI	CTRYAG	1 cut(s)	804
BfuAI	ACCTGC	1 cut(s)	892
BisI	GCNGC	3 cut(s)	338, 804, 807
BlsI	GCNGC	3 cut(s)	339, 805, 808
Bme1390I	CCNGG	1 cut(s)	773
Bme18I	GGWCC	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	770, 881
BmiI	GGNNCC	2 cut(s)	508, 715
BmrFI	CCNGG	1 cut(s)	773
BpiI	GAAGAC	2 cut(s)	252, 720
BpuEI	CTTGAG	2 cut(s)	425, 632
BpuMI	CCSGG	1 cut(s)	773
Bsa29I	ATCGAT	2 cut(s)	354, 561
BsaXI	ACNNNNNCTCC	8 cut(s)	160, 190, 450, 480, 657, 687, 767, 797
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 816, 837, 890
BseCI	ATCGAT	2 cut(s)	354, 561
BseLI	CCNNNNNNNGG	4 cut(s)	320, 816, 837, 890
BseMII	CTCAG	7 cut(s)	404, 427, 537, 611, 634, 744, 837
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	349, 790, 818
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	155, 763, 771, 830
BshVI	ATCGAT	2 cut(s)	354, 561
BsiSI	CCGG	2 cut(s)	773, 788
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	4 cut(s)	320, 816, 837, 890
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	4 cut(s)	155, 763, 771, 830
Bsp143I	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
BspACI	CCGC	5 cut(s)	267, 278, 284, 368, 575
BspANI	GGCC	4 cut(s)	155, 763, 771, 830
BspCNI	CTCAG	7 cut(s)	403, 426, 538, 610, 633, 745, 838
BspDI	ATCGAT	2 cut(s)	354, 561
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	508, 715
BspMAI	CTGCAG	1 cut(s)	808
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	267
BssMI	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
BssSI	CACGAG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	107, 893
Bst6I	CTCTTC	1 cut(s)	893
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	7 cut(s)	390, 413, 546, 597, 620, 753, 846
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	6 cut(s)	277, 354, 405, 561, 612, 739
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	771
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	349, 790, 818
BstV2I	GAAGAC	2 cut(s)	252, 720
Bsu15I	ATCGAT	2 cut(s)	354, 561
BsuRI	GGCC	4 cut(s)	155, 763, 771, 830
BsuTUI	ATCGAT	2 cut(s)	354, 561
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	770, 881
ClaI	ATCGAT	2 cut(s)	354, 561
CseI	GACGC	2 cut(s)	83, 100
Csp6I	GTAC	2 cut(s)	467, 674
CviAII	CATG	2 cut(s)	718, 740
CviQI	GTAC	2 cut(s)	467, 674
DdeI	CTNAG	7 cut(s)	390, 413, 546, 597, 620, 753, 846
DpnI	GATC	6 cut(s)	276, 353, 404, 560, 611, 738
DpnII	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
Eam1104I	CTCTTC	1 cut(s)	893
EarI	CTCTTC	1 cut(s)	893
Eco47I	GGWCC	1 cut(s)	881
FaeI	CATG	2 cut(s)	721, 743
FaiI	YATR	5 cut(s)	231, 377, 584, 719, 741
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	717, 739
FbaI	TGATCA	2 cut(s)	402, 609
Fnu4HI	GCNGC	3 cut(s)	338, 804, 807
Fsp4HI	GCNGC	3 cut(s)	338, 804, 807
FspBI	CTAG	3 cut(s)	11, 386, 593
GluI	GCNGC	3 cut(s)	338, 804, 807
HaeIII	GGCC	4 cut(s)	155, 763, 771, 830
HapII	CCGG	2 cut(s)	773, 788
HgaI	GACGC	2 cut(s)	83, 100
Hin1II	CATG	2 cut(s)	721, 743
HincII	GTYRAC	2 cut(s)	373, 580
HindII	GTYRAC	2 cut(s)	373, 580
HinfI	GANTC	9 cut(s)	71, 245, 251, 418, 436, 451, 625, 643, 658
HpaII	CCGG	2 cut(s)	773, 788
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	373, 580
Hpy188I	TCNGA	7 cut(s)	67, 250, 393, 402, 489, 600, 609
Hpy188III	TCNNGA	6 cut(s)	11, 110, 415, 545, 622, 752
Hpy8I	GTNNAC	2 cut(s)	373, 580
Hpy99I	CGWCG	2 cut(s)	71, 787
HpyAV	CCTTC	5 cut(s)	66, 298, 531, 546, 753
HpyCH4III	ACNGT	2 cut(s)	107, 893
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	2 cut(s)	346, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	7 cut(s)	390, 413, 546, 597, 620, 753, 846
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	2 cut(s)	721, 743
Ksp22I	TGATCA	2 cut(s)	402, 609
Kzo9I	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
LmnI	GCTCC	3 cut(s)	68, 168, 754
LpnPI	CCDG	9 cut(s)	123, 240, 400, 558, 607, 765, 786, 801, 897
Lsp1109I	GCAGC	3 cut(s)	349, 790, 818
MaeI	CTAG	3 cut(s)	11, 386, 593
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	6 cut(s)	276, 353, 404, 560, 611, 738
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
MboII	GAAGA	4 cut(s)	226, 252, 720, 866
MfeI	CAATTG	1 cut(s)	765
MluCI	AATT	3 cut(s)	308, 765, 812
MluI	ACGCGT	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	412, 619
MmeI	TCCRAC	4 cut(s)	90, 512, 719, 831
MseI	TTAA	1 cut(s)	836
MspI	CCGG	2 cut(s)	773, 788
MspR9I	CCNGG	1 cut(s)	773
MunI	CAATTG	1 cut(s)	765
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	773
NdeII	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
NlaIII	CATG	2 cut(s)	721, 743
NlaIV	GGNNCC	2 cut(s)	508, 715
NmeAIII	GCCGAG	1 cut(s)	856
PfeI	GAWTC	7 cut(s)	71, 245, 251, 436, 451, 643, 658
PkrI	GCNGC	3 cut(s)	339, 805, 808
PleI	GAGTC	2 cut(s)	412, 619
PpsI	GAGTC	2 cut(s)	412, 619
PspN4I	GGNNCC	2 cut(s)	508, 715
PspPI	GGNCC	2 cut(s)	770, 881
PstI	CTGCAG	1 cut(s)	808
RsaI	GTAC	2 cut(s)	468, 675
RsaNI	GTAC	2 cut(s)	467, 674
SaqAI	TTAA	1 cut(s)	836
SatI	GCNGC	3 cut(s)	338, 804, 807
Sau3AI	GATC	6 cut(s)	274, 351, 402, 558, 609, 736
Sau96I	GGNCC	2 cut(s)	770, 881
SchI	GAGTC	2 cut(s)	412, 619
ScrFI	CCNGG	1 cut(s)	773
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	881
SmlI	CTYRAG	2 cut(s)	440, 647
SmoI	CTYRAG	2 cut(s)	440, 647
Sse9I	AATT	3 cut(s)	308, 765, 812
SsiI	CCGC	5 cut(s)	267, 278, 284, 368, 575
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	3 cut(s)	11, 386, 593
StyD4I	CCNGG	1 cut(s)	771
TaaI	ACNGT	2 cut(s)	107, 893
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	4 cut(s)	197, 263, 354, 561
TasI	AATT	3 cut(s)	308, 765, 812
TatI	WGTACW	2 cut(s)	466, 673
TfiI	GAWTC	7 cut(s)	71, 245, 251, 436, 451, 643, 658
Tru1I	TTAA	1 cut(s)	836
Tru9I	TTAA	1 cut(s)	836
TseI	GCWGC	3 cut(s)	337, 803, 806
TspDTI	ATGAA	3 cut(s)	17, 30, 206
TspGWI	ACGGA	3 cut(s)	26, 471, 678
VpaK11BI	GGWCC	1 cut(s)	881
XapI	RAATTY	1 cut(s)	308
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	3 cut(s)	11, 386, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.