Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002723.1

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Reverse (-)

182051 .. 182551

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002723.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggaagcagaggatgatagcccctatgagatactaggatcaaaccacaatgtgtctgctgataacatcaagaaaaggtactggaagttgtcacttttggtgcaccctgataaatgctcacaccctcaaaccaaccaagcatttgtgaagctgaacaaggcctttaaagaactacaggatccggataagcggagagttctggatgagaagattgagctcagggagaagcaggagagattcattgttgagttgagggcaatgcgggacgcagcaatgtggagaaagatgcaggggatttccatggagggtgatgaggagctactggcaggtaatgtgagtggtgttaaagcggcacgaaaaagagatagagtggatgacagagctttcactggagaggaaacatggtatgagaacaatgcagtcgacaatgttcgcaggagtgctaaacaagggcgtggggataccagtggatggactgatgctccttctgaaagagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

166

Amino Acids

19.14

Weight (kDa)

6.34

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	3 cut(s)	190, 262, 350
AclWI	GGATC	3 cut(s)	46, 173, 186
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	471
AluBI	AGCT	5 cut(s)	151, 217, 319, 383, 497
AluI	AGCT	5 cut(s)	151, 217, 319, 383, 497
Alw21I	GWGCWC	2 cut(s)	105, 219
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	46, 173, 186
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	105
BamHI	GGATCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	105, 219
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	1 cut(s)	465
BciVI	GTATCC	1 cut(s)	454
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	270, 351
BlsI	GCNGC	2 cut(s)	271, 352
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	2 cut(s)	276, 469
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	4 cut(s)	86, 327, 394, 465
Bse3DI	GCAATG	2 cut(s)	264, 279
BseAI	TCCGGA	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	4 cut(s)	19, 208, 379, 476
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	2 cut(s)	264, 279
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	4 cut(s)	86, 327, 394, 465
BseRI	GAGGAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	281
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	105, 219
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	105, 219
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	38, 178
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	3 cut(s)	190, 262, 350
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	46, 173, 186
BsrDI	GCAATG	2 cut(s)	264, 279
BsrI	ACTGG	4 cut(s)	86, 327, 394, 465
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	38, 178
BssT1I	CCWWGG	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	218, 498
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	4 cut(s)	19, 208, 379, 476
BstKTI	GATC	2 cut(s)	41, 181
BstMBI	GATC	2 cut(s)	38, 178
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	4 cut(s)	19, 208, 379, 476
BtsIMutI	CAGTG	2 cut(s)	387, 472
BveI	ACCTGC	1 cut(s)	317
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	301, 402
CviJI	RGCY	7 cut(s)	21, 151, 161, 217, 319, 383, 497
CviKI_1	RGCY	7 cut(s)	21, 151, 161, 217, 319, 383, 497
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	218, 498
DpnI	GATC	2 cut(s)	40, 180
DpnII	GATC	2 cut(s)	38, 178
DraI	TTTAAA	1 cut(s)	166
DraIII	CACNNNGTG	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	304, 405
FaiI	YATR	4 cut(s)	27, 302, 403, 408
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	300, 401
FauI	CCCGC	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	270, 351
FokI	GGATG	4 cut(s)	26, 215, 386, 483
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	270, 351
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	2 cut(s)	270, 351
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	304, 405
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	103, 424
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	3 cut(s)	70, 182, 200
Hpy8I	GTNNAC	2 cut(s)	103, 424
HpyAV	CCTTC	1 cut(s)	495
HpyCH4V	TGCA	3 cut(s)	103, 289, 419
HpyF3I	CTNAG	2 cut(s)	218, 498
Hsp92II	CATG	2 cut(s)	304, 405
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	38, 178
LmnI	GCTCC	2 cut(s)	316, 487
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	2 cut(s)	276, 469
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	2 cut(s)	40, 180
MboI	GATC	2 cut(s)	38, 178
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	105, 219
MnlI	CCTC	6 cut(s)	4, 135, 246, 298, 307, 388
MroI	TCCGGA	1 cut(s)	181
MseI	TTAA	2 cut(s)	165, 345
MspI	CCGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	38, 178
NlaIII	CATG	2 cut(s)	304, 405
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	271, 352
Psp124BI	GAGCTC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	165, 345
SatI	GCNGC	2 cut(s)	270, 351
Sau3AI	GATC	2 cut(s)	38, 178
SduI	GDGCHC	2 cut(s)	105, 219
SetI	ASST	7 cut(s)	80, 153, 219, 321, 331, 385, 499
SfaNI	GCATC	2 cut(s)	276, 469
SfcI	CTRYAG	1 cut(s)	173
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	190, 262, 350
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	1 cut(s)	423
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	165, 345
Tru9I	TTAA	2 cut(s)	165, 345
TscAI	CASTG	2 cut(s)	394, 472
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	394, 472
Van91I	CCANNNNNTGG	1 cut(s)	471
VneI	GTGCAC	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.