Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Forward (+)

1296147 .. 1298421

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGTTCATCAAAACTGATCAATCTCATACCACCTCTATCTGTGGTGGGACTTAGTGAAGAACAGGCAGGAGAACAAGCCAACGGTGATTTATTAGTTTTCACATCAACCTTCAATCCAATGAAGAACACTGTATCCGGACGGCAAGAAAAGTCGATTAGGAAGCTTGTTGTTGATGCTGAGACGGATAAGGTTCTAGGAGCATCCATGTGTGGGCCAGATTCACCTGAGATTTTGCAGGGCATTGCTGTTGCACTGAAGTGTGGAGCAACCAAGGCACAATTTGACAGTACAGTAGGAATACACCCTTCTGCTGCAGAGGAATTTGTGACCATGCGTTCAGTGACAAGGCGTGTTTCTGCAAGTGGCAAACCAAAGACAAGTGCAAACATTAGGATGAAAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

136

Amino Acids

14.44

Weight (kDa)

7.7

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_dim	PF02852	10 - 112	9.7e-28	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	259
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	176
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	98, 216
BbvI	GCAGC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	215
BmsI	GCATC	2 cut(s)	166, 212
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	203, 402
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	171, 219
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	217
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	172, 220
BspEI	TCCGGA	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	4 cut(s)	86, 133, 290, 295
BstDEI	CTNAG	3 cut(s)	53, 180, 228
BstF5I	GGATG	2 cut(s)	203, 402
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	203, 402
BtsIMutI	CAGTG	3 cut(s)	129, 254, 348
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	2 cut(s)	208, 334
CviJI	RGCY	3 cut(s)	80, 166, 217
CviKI_1	RGCY	3 cut(s)	80, 166, 217
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	3 cut(s)	53, 180, 228
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	211, 337
FaiI	YATR	3 cut(s)	29, 209, 335
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	207, 333
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	211, 337
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	98, 216
Hpy188III	TCNNGA	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	121, 318
HpyCH4III	ACNGT	4 cut(s)	86, 133, 290, 295
HpyCH4V	TGCA	5 cut(s)	238, 254, 317, 362, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	53, 180, 228
Hsp92II	CATG	2 cut(s)	211, 337
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	200, 266
LpnPI	CCDG	6 cut(s)	50, 54, 151, 224, 231, 240
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	166, 212
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	2 cut(s)	328, 343
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	2 cut(s)	71, 136
MluCI	AATT	2 cut(s)	281, 323
MnlI	CCTC	3 cut(s)	45, 313, 397
MroI	TCCGGA	1 cut(s)	137
MslI	CAYNNNNRTG	3 cut(s)	208, 259, 395
MspI	CCGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	211, 337
NmuCI	GTSAC	2 cut(s)	328, 343
OliI	CACNNNNGTG	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	3 cut(s)	208, 259, 395
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	215
SetI	ASST	5 cut(s)	37, 113, 168, 195, 229
SfaNI	GCATC	2 cut(s)	166, 212
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	3 cut(s)	208, 259, 395
Sse9I	AATT	2 cut(s)	281, 323
SspMI	CTAG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	86, 133, 290, 295
TaqI	TCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	281, 323
TatI	WGTACW	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	3 cut(s)	136, 261, 348
TseFI	GTSAC	2 cut(s)	328, 343
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	2 cut(s)	328, 343
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	136, 261, 348
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.