Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Reverse (-)

11448493 .. 11459609

Gene Structure 11117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG077200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGAAATGTGAATGGGCTGGTTGGACCCTAGAAGTGGGCCTCAAATTGTCCTATATTCATGATGTTGGGCCTTCAGCGTGTACCAAAACCCAAAACTTGGATTTATTAGAGGTGTGGTTTCAACGGTGCTCTGAATTTGATTGCAAAATGGGGAGTAAAAGCAAGAGGAAGAAGCAATTGCCGGAATCGAGCGACGATGATTCACCGTCGTCGTCTCCTTCAAGCTCTGACGATTCCGATCGCTCCTCGAAACGGCGTCGTCGCCACCGTCACAGAAGCGACGACGGCTCCAGAAGAGAGAAAGAAAGGAGAAGGGAGAAGAGAGAGAAACGGCGAAGTAAGAGAGAGGCGAGGCGGAGCAAATCGAAGACCAAGACGAAGACGAAGAAGAAGAAGAAGAGGGACTATGACTCCGGTTCGGGGTCTTCGAGTGGTGGCGGTGATTCTGAGCCGGAGAGGAGCCGGATTGAGCCGCAAGAGGTTTTGCGAGACTTGTTCAGTGAATTTCCTAATGTTGGCGACGATTTGAAGCAGCTTTTGCAAATGATTGATAGTGGGCAAGCAGTTGATATAAAGGGAATATCTGAAAGATCTTTGATTAAGCATCTAAAGAAGTTATTCCTTTCATTAGAACTCAAGGAAAGTGATGGAGTTTTTGTACTGCCTTCAAATGTTCGTCCCACCTTGGAGGTTGTTGGGGTCATGATTCCAATGTCTGTAGATCTTAAATCTTCATTAAATGAGATGCATTCAGAACAACGGGATGAGGAATACAAACAAGTGGTTGGTGATGATAATATGGCATCGCCATGTCCGGAGGATAATGTTGCTGGTCCTAACAGAAGGATAATTGGCCCTGCAATGCCATCGGCTGAGCTACTTGCTGCTGCAGCCAAACTGACAGAAGCACAAGCCGAGCTCAGGGAAGTGGAGTTGGAAGAGGATGCTGGAATGTTTATAGGGCCTCCACCACCCGCTGTTGTTGCTGAAGTTGAATCAGCTAATGAAGCTGAACGGTTTGAAGAGGTCACGAGGATCATAGATGCTGAGGAGAATAGTCCATATGATGTTCTAGGAGCAAACCAAAATATGGCTCCTGAGAACATAAAGAAAAGGTACTGGAAGATGTCTCTTTTGGTGCACCCTGATAAATGCTCACATCCTCAAGCTCAACAAGCATTTGTCAAGTTGAACAAAGCTTTTAAAGATTTACAAGATCCAGAAAAGCGGAAAGTGCTAGATGAGAAGATTAAACTCAAGGAGGAGCATGAGAAATTTAAGGTGGAGTTGCGAGCAATGCGGGAGGCTGCACAATGGAGAAAGTTACAAGGAATATCCATGGAGGGTGATGATGAGCTATTGGCAGACATGGATGTTAAAGTGGCACCACAAAGAGATGAGTGGATGACAACGCTTCCTCCTGAGAGGAGACCTGGTGGTATGCCTACGCAATCAACAAAGTTTAGCAGCACTGTTAAAGAAGGACGTGGTGATACTAGTGCATGGACTGATACCCCTTCTGACAGAGCCCAGAAAGCTAAGATGGATTACTTAGAAGCATATAATGAGGCTGCATCACTTGCTTCAAATGAGGAGAATAAAATGAATAGTTCAGATGCAGATTTGGTGGACAGATACAACAAAGAAAAACGATCAAAATCATTGGTACAAAAACACCAAGAGACTGCAAGCCGCCCGAAGAGAAAATCCAAGCAACCGTTGGAGAAGGAGAAGGAGGAGAAGGAAGAATGGGTGGGAAAACATCCTTGGAAGCCTTGGGACCGTGAAAAGGATTTGACAGGCGGTAGGCAAAGTGTAAAATTGGATTCAGAAAACATGGCTCAAGGTTTAACGTCTCGGTTTTCTGCGGGCTCCTTTCAGAGAAACTTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

631

Amino Acids

71.81

Weight (kDa)

8.23

Isoelectric Point (pI)

65.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	354 - 414	4.8e-17	DnaJ domain
DUF3752	PF12572	473 - 622	1.4e-27	Protein of unknown function (DUF3752)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1384
AccB7I	CCANNNNNTGG	2 cut(s)	97, 1090
AccIII	TCCGGA	1 cut(s)	814
AciI	CCGC	9 cut(s)	355, 438, 473, 975, 1228, 1300, 1693, 1803, 1868
AclWI	GGATC	2 cut(s)	1043, 1211
AcsI	RAATTY	3 cut(s)	134, 503, 1274
AcuI	CTGAAG	2 cut(s)	57, 1008
AcyI	GRCGYC	1 cut(s)	256
AfaI	GTAC	4 cut(s)	82, 660, 1118, 1668
AfiI	CCNNNNNNNGG	8 cut(s)	34, 97, 252, 420, 515, 921, 1090, 1789
AgsI	TTSAA	8 cut(s)	122, 222, 529, 669, 995, 1022, 1192, 1587
AhlI	ACTAGT	1 cut(s)	1496
AjiI	CACGTC	1 cut(s)	1487
AjnI	CCWGG	1 cut(s)	1432
AjuI	GAANNNNNNNTTGG	2 cut(s)	1750, 1782
Alw21I	GWGCWC	3 cut(s)	131, 921, 1143
Alw26I	GTCTC	6 cut(s)	219, 483, 1134, 1423, 1676, 1860
Alw44I	GTGCAC	1 cut(s)	1139
AlwI	GGATC	2 cut(s)	1043, 1211
Aor13HI	TCCGGA	1 cut(s)	814
AoxI	GGCC	4 cut(s)	37, 68, 853, 962
ApaLI	GTGCAC	1 cut(s)	1139
ApeKI	GCWGC	7 cut(s)	532, 884, 887, 890, 1307, 1467, 1571
ApoI	RAATTY	3 cut(s)	134, 503, 1274
Asp700I	GAANNNNTTC	1 cut(s)	617
AspS9I	GGNCC	7 cut(s)	24, 37, 68, 833, 854, 962, 1780
AsuHPI	GGTGA	5 cut(s)	195, 452, 800, 1358, 1502
AvaII	GGWCC	3 cut(s)	24, 833, 1780
BaeGI	GKGCMC	1 cut(s)	1143
BanI	GGYRCC	1 cut(s)	1384
BanII	GRGCYC	3 cut(s)	921, 1531, 1874
BauI	CACGAG	1 cut(s)	1030
BbsI	GAAGAC	3 cut(s)	374, 386, 417
Bbv12I	GWGCWC	3 cut(s)	131, 921, 1143
BbvCI	CCTCAGC	1 cut(s)	1047
BbvI	GCAGC	7 cut(s)	544, 871, 874, 902, 1294, 1479, 1558
BccI	CCATC	3 cut(s)	641, 874, 1537
BceAI	ACGGC	3 cut(s)	269, 301, 347
BcgI	CGANNNNNNTGC	2 cut(s)	849, 883
BciT130I	CCWGG	1 cut(s)	1434
BcoDI	GTCTC	6 cut(s)	219, 483, 1134, 1423, 1676, 1860
BcuI	ACTAGT	1 cut(s)	1496
BfaI	CTAG	4 cut(s)	29, 1073, 1238, 1497
BfmI	CTRYAG	2 cut(s)	717, 888
BglII	AGATCT	2 cut(s)	590, 721
BisI	GCNGC	9 cut(s)	473, 533, 885, 888, 891, 1308, 1468, 1572, 1693
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	9 cut(s)	474, 534, 886, 889, 892, 1309, 1469, 1573, 1694
Bme1390I	CCNGG	1 cut(s)	1434
Bme18I	GGWCC	3 cut(s)	24, 833, 1780
BmgBI	CACGTC	1 cut(s)	1487
BmgT120I	GGNCC	7 cut(s)	24, 37, 68, 833, 854, 962, 1780
BmiI	GGNNCC	7 cut(s)	26, 289, 461, 1095, 1386, 1781, 1873
BmrFI	CCNGG	1 cut(s)	1434
BmsI	GCATC	7 cut(s)	613, 735, 812, 934, 1033, 1583, 1606
BpiI	GAAGAC	3 cut(s)	374, 386, 417
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	2 cut(s)	920, 1047
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	4 cut(s)	620, 1149, 1241, 1827
BsaBI	GATNNNNATC	2 cut(s)	237, 1657
BsaHI	GRCGYC	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	1423
BsaJI	CCNNGG	4 cut(s)	684, 1338, 1766, 1775
BsaWI	WCCGGW	2 cut(s)	413, 814
Bsc4I	CCNNNNNNNGG	8 cut(s)	34, 97, 252, 420, 515, 921, 1090, 1789
Bse1I	ACTGG	1 cut(s)	1124
Bse3DI	GCAATG	2 cut(s)	867, 1302
Bse8I	GATNNNNATC	2 cut(s)	237, 1657
BseAI	TCCGGA	1 cut(s)	814
BseBI	CCWGG	1 cut(s)	1434
BseDI	CCNNGG	4 cut(s)	684, 1338, 1766, 1775
BseGI	GGATG	6 cut(s)	769, 949, 1159, 1378, 1410, 1762
BseJI	GATNNNNATC	2 cut(s)	237, 1657
BseLI	CCNNNNNNNGG	8 cut(s)	34, 97, 252, 420, 515, 921, 1090, 1789
BseMI	GCAATG	2 cut(s)	867, 1302
BseMII	CTCAG	6 cut(s)	438, 864, 934, 1038, 1089, 1413
BseNI	ACTGG	1 cut(s)	1124
BseRI	GAGGAG	7 cut(s)	235, 472, 1064, 1277, 1441, 1607, 1751
BseSI	GKGCMC	1 cut(s)	1143
BseXI	GCAGC	7 cut(s)	544, 871, 874, 902, 1294, 1479, 1558
BsgI	GTGCAG	1 cut(s)	1293
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	4 cut(s)	39, 70, 855, 964
BshNI	GGYRCC	1 cut(s)	1384
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	3 cut(s)	131, 921, 1143
BsiSI	CCGG	5 cut(s)	182, 414, 452, 463, 815
BslFI	GGGAC	3 cut(s)	416, 663, 1793
BslI	CCNNNNNNNGG	8 cut(s)	34, 97, 252, 420, 515, 921, 1090, 1789
BsmAI	GTCTC	6 cut(s)	219, 483, 1134, 1423, 1676, 1860
BsmBI	CGTCTC	2 cut(s)	219, 1860
BsmFI	GGGAC	3 cut(s)	416, 663, 1793
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	4 cut(s)	39, 70, 855, 964
Bso31I	GGTCTC	1 cut(s)	1423
Bsp1286I	GDGCHC	5 cut(s)	131, 921, 1143, 1531, 1874
Bsp13I	TCCGGA	1 cut(s)	814
Bsp143I	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
Bsp1720I	GCTNAGC	1 cut(s)	873
Bsp19I	CCATGG	1 cut(s)	1338
BspACI	CCGC	9 cut(s)	355, 438, 473, 975, 1228, 1300, 1693, 1803, 1868
BspANI	GGCC	4 cut(s)	39, 70, 855, 964
BspCNI	CTCAG	6 cut(s)	439, 865, 933, 1039, 1090, 1414
BspEI	TCCGGA	1 cut(s)	814
BspHI	TCATGA	2 cut(s)	58, 702
BspLI	GGNNCC	7 cut(s)	26, 289, 461, 1095, 1386, 1781, 1873
BspMAI	CTGCAG	1 cut(s)	892
BspPI	GGATC	2 cut(s)	1043, 1211
BspT107I	GGYRCC	1 cut(s)	1384
BspTNI	GGTCTC	1 cut(s)	1423
BsrDI	GCAATG	2 cut(s)	867, 1302
BsrI	ACTGG	1 cut(s)	1124
BssECI	CCNNGG	4 cut(s)	684, 1338, 1766, 1775
BssMI	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
BssNI	GRCGYC	1 cut(s)	256
BssSI	CACGAG	1 cut(s)	1030
BssT1I	CCWWGG	4 cut(s)	684, 1338, 1766, 1775
Bst2BI	CACGAG	1 cut(s)	1030
Bst2UI	CCWGG	1 cut(s)	1434
Bst4CI	ACNGT	7 cut(s)	126, 207, 269, 1017, 1474, 1719, 1784
Bst6I	CTCTTC	6 cut(s)	289, 314, 392, 933, 1017, 1694
BstACI	GRCGYC	1 cut(s)	256
BstAPI	GCANNNNNTGC	2 cut(s)	538, 1580
BstC8I	GCNNGC	4 cut(s)	561, 1293, 1690, 1870
BstDEI	CTNAG	8 cut(s)	447, 873, 920, 1047, 1098, 1422, 1539, 1552
BstDSI	CCRYGG	1 cut(s)	1338
BstF5I	GGATG	6 cut(s)	769, 949, 1159, 1378, 1410, 1762
BstKTI	GATC	6 cut(s)	241, 593, 724, 1038, 1219, 1655
BstMAI	GTCTC	6 cut(s)	219, 483, 1134, 1423, 1676, 1860
BstMBI	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
BstMCI	CGRYCG	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	1434
BstSCI	CCNGG	1 cut(s)	1432
BstSFI	CTRYAG	2 cut(s)	717, 888
BstSLI	GKGCMC	1 cut(s)	1143
BstV1I	GCAGC	7 cut(s)	544, 871, 874, 902, 1294, 1479, 1558
BstV2I	GAAGAC	3 cut(s)	374, 386, 417
BstX2I	RGATCY	3 cut(s)	590, 721, 1216
BstYI	RGATCY	3 cut(s)	590, 721, 1216
BsuRI	GGCC	4 cut(s)	39, 70, 855, 964
BtgI	CCRYGG	1 cut(s)	1338
BtgZI	GCGATG	1 cut(s)	789
BtrI	CACGTC	1 cut(s)	1487
BtsCI	GGATG	6 cut(s)	769, 949, 1159, 1378, 1410, 1762
BtsIMutI	CAGTG	2 cut(s)	505, 1470
Cac8I	GCNNGC	4 cut(s)	561, 1293, 1690, 1870
CciI	TCATGA	2 cut(s)	58, 702
Cfr13I	GGNCC	7 cut(s)	24, 37, 68, 833, 854, 962, 1780
CseI	GACGC	1 cut(s)	245
CsiI	ACCWGGT	1 cut(s)	1432
Csp6I	GTAC	4 cut(s)	81, 659, 1117, 1667
CviAII	CATG	8 cut(s)	59, 703, 810, 1268, 1339, 1369, 1503, 1837
CviQI	GTAC	4 cut(s)	81, 659, 1117, 1667
DdeI	CTNAG	8 cut(s)	447, 873, 920, 1047, 1098, 1422, 1539, 1552
DpnI	GATC	6 cut(s)	240, 592, 723, 1037, 1218, 1654
DpnII	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
DraI	TTTAAA	1 cut(s)	1204
Eam1104I	CTCTTC	6 cut(s)	289, 314, 392, 933, 1017, 1694
EarI	CTCTTC	6 cut(s)	289, 314, 392, 933, 1017, 1694
EciI	GGCGGA	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	4 cut(s)	684, 1338, 1766, 1775
Eco24I	GRGCYC	3 cut(s)	921, 1531, 1874
Eco31I	GGTCTC	1 cut(s)	1423
Eco47I	GGWCC	3 cut(s)	24, 833, 1780
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	57, 1008
EcoICRI	GAGCTC	1 cut(s)	919
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	1432
EcoT14I	CCWWGG	4 cut(s)	684, 1338, 1766, 1775
EcoT22I	ATGCAT	1 cut(s)	750
EcoT38I	GRGCYC	3 cut(s)	921, 1531, 1874
ErhI	CCWWGG	4 cut(s)	684, 1338, 1766, 1775
Esp3I	CGTCTC	2 cut(s)	219, 1860
FaeI	CATG	8 cut(s)	62, 706, 813, 1271, 1342, 1372, 1506, 1840
FaqI	GGGAC	3 cut(s)	416, 663, 1793
FatI	CATG	8 cut(s)	58, 702, 809, 1267, 1338, 1368, 1502, 1836
FauI	CCCGC	3 cut(s)	982, 1293, 1861
FauNDI	CATATG	1 cut(s)	1063
Fnu4HI	GCNGC	9 cut(s)	473, 533, 885, 888, 891, 1308, 1468, 1572, 1693
FokI	GGATG	6 cut(s)	776, 956, 1146, 1385, 1417, 1749
FriOI	GRGCYC	3 cut(s)	921, 1531, 1874
Fsp4HI	GCNGC	9 cut(s)	473, 533, 885, 888, 891, 1308, 1468, 1572, 1693
FspBI	CTAG	4 cut(s)	29, 1073, 1238, 1497
GluI	GCNGC	9 cut(s)	473, 533, 885, 888, 891, 1308, 1468, 1572, 1693
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	4 cut(s)	39, 70, 855, 964
HapII	CCGG	5 cut(s)	182, 414, 452, 463, 815
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	256
Hin1II	CATG	8 cut(s)	62, 706, 813, 1271, 1342, 1372, 1506, 1840
HindIII	AAGCTT	1 cut(s)	1197
HinfI	GANTC	8 cut(s)	185, 200, 233, 410, 443, 706, 995, 1826
HpaII	CCGG	5 cut(s)	182, 414, 452, 463, 815
HphI	GGTGA	5 cut(s)	195, 452, 800, 1358, 1502
Hpy166II	GTNNAC	3 cut(s)	81, 1141, 1630
Hpy188III	TCNNGA	8 cut(s)	59, 291, 703, 815, 1030, 1097, 1220, 1421
Hpy8I	GTNNAC	3 cut(s)	81, 1141, 1630
Hpy99I	CGWCG	8 cut(s)	197, 211, 214, 261, 264, 284, 287, 524
HpyCH4III	ACNGT	7 cut(s)	126, 207, 269, 1017, 1474, 1719, 1784
HpyCH4IV	ACGT	2 cut(s)	1486, 1853
HpyF3I	CTNAG	8 cut(s)	447, 873, 920, 1047, 1098, 1422, 1539, 1552
HpySE526I	ACGT	2 cut(s)	1486, 1853
Hsp92I	GRCGYC	1 cut(s)	256
Hsp92II	CATG	8 cut(s)	62, 706, 813, 1271, 1342, 1372, 1506, 1840
Kpn2I	TCCGGA	1 cut(s)	814
Kzo9I	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
LmnI	GCTCC	8 cut(s)	248, 293, 357, 459, 1076, 1099, 1264, 1877
Lsp1109I	GCAGC	7 cut(s)	544, 871, 874, 902, 1294, 1479, 1558
LweI	GCATC	7 cut(s)	613, 735, 812, 934, 1033, 1583, 1606
MabI	ACCWGGT	1 cut(s)	1432
MaeI	CTAG	4 cut(s)	29, 1073, 1238, 1497
MaeII	ACGT	2 cut(s)	1486, 1853
MaeIII	GTNAC	3 cut(s)	269, 1027, 1323
MalI	GATC	6 cut(s)	240, 592, 723, 1037, 1218, 1654
MboI	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
MfeI	CAATTG	1 cut(s)	176
MflI	RGATCY	3 cut(s)	590, 721, 1216
MhlI	GDGCHC	5 cut(s)	131, 921, 1143, 1531, 1874
MluCI	AATT	7 cut(s)	44, 134, 176, 503, 849, 1274, 1820
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	915, 1701
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	9 cut(s)	600, 726, 737, 1203, 1251, 1278, 1377, 1476, 1850
MslI	CAYNNNNRTG	1 cut(s)	808
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	5 cut(s)	182, 414, 452, 463, 815
MspR9I	CCNGG	1 cut(s)	1434
MunI	CAATTG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	1434
NcoI	CCATGG	1 cut(s)	1338
NdeI	CATATG	1 cut(s)	1063
NdeII	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
NlaIII	CATG	8 cut(s)	62, 706, 813, 1271, 1342, 1372, 1506, 1840
NlaIV	GGNNCC	7 cut(s)	26, 289, 461, 1095, 1386, 1781, 1873
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	2 cut(s)	269, 1027
NsiI	ATGCAT	1 cut(s)	750
PagI	TCATGA	2 cut(s)	58, 702
PcsI	WCGNNNNNNNCGW	2 cut(s)	265, 425
PctI	GAATGC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	7 cut(s)	185, 200, 233, 443, 706, 995, 1826
PflMI	CCANNNNNTGG	2 cut(s)	97, 1090
PkrI	GCNGC	9 cut(s)	474, 534, 886, 889, 892, 1309, 1469, 1573, 1694
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	1432
PspGI	CCWGG	1 cut(s)	1432
PspN4I	GGNNCC	7 cut(s)	26, 289, 461, 1095, 1386, 1781, 1873
PspPI	GGNCC	7 cut(s)	24, 37, 68, 833, 854, 962, 1780
PstI	CTGCAG	1 cut(s)	892
PsuI	RGATCY	3 cut(s)	590, 721, 1216
PvuI	CGATCG	1 cut(s)	241
RsaI	GTAC	4 cut(s)	82, 660, 1118, 1668
RsaNI	GTAC	4 cut(s)	81, 659, 1117, 1667
RseI	CAYNNNNRTG	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	9 cut(s)	600, 726, 737, 1203, 1251, 1278, 1377, 1476, 1850
SatI	GCNGC	9 cut(s)	473, 533, 885, 888, 891, 1308, 1468, 1572, 1693
Sau3AI	GATC	6 cut(s)	238, 590, 721, 1035, 1216, 1652
Sau96I	GGNCC	7 cut(s)	24, 37, 68, 833, 854, 962, 1780
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	1434
SduI	GDGCHC	5 cut(s)	131, 921, 1143, 1531, 1874
SexAI	ACCWGGT	1 cut(s)	1432
SfaNI	GCATC	7 cut(s)	613, 735, 812, 934, 1033, 1583, 1606
SfcI	CTRYAG	2 cut(s)	717, 888
SinI	GGWCC	3 cut(s)	24, 833, 1780
SmiMI	CAYNNNNRTG	1 cut(s)	808
SmlI	CTYRAG	4 cut(s)	635, 1164, 1256, 1842
SmoI	CTYRAG	4 cut(s)	635, 1164, 1256, 1842
SpeI	ACTAGT	1 cut(s)	1496
Sse9I	AATT	7 cut(s)	44, 134, 176, 503, 849, 1274, 1820
SsiI	CCGC	9 cut(s)	355, 438, 473, 975, 1228, 1300, 1693, 1803, 1868
SspMI	CTAG	4 cut(s)	29, 1073, 1238, 1497
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	1432
StyI	CCWWGG	4 cut(s)	684, 1338, 1766, 1775
TaaI	ACNGT	7 cut(s)	126, 207, 269, 1017, 1474, 1719, 1784
TaiI	ACGT	2 cut(s)	1489, 1856
TaqI	TCGA	4 cut(s)	188, 248, 365, 428
TasI	AATT	7 cut(s)	44, 134, 176, 503, 849, 1274, 1820
TatI	WGTACW	1 cut(s)	658
TauI	GCSGC	2 cut(s)	475, 1695
TfiI	GAWTC	7 cut(s)	185, 200, 233, 443, 706, 995, 1826
Tru1I	TTAA	9 cut(s)	600, 726, 737, 1203, 1251, 1278, 1377, 1476, 1850
Tru9I	TTAA	9 cut(s)	600, 726, 737, 1203, 1251, 1278, 1377, 1476, 1850
TscAI	CASTG	2 cut(s)	505, 1477
TseFI	GTSAC	2 cut(s)	269, 1027
TseI	GCWGC	7 cut(s)	532, 884, 887, 890, 1307, 1467, 1571
Tsp45I	GTSAC	2 cut(s)	269, 1027
TspDTI	ATGAA	6 cut(s)	17, 47, 615, 723, 1020, 1619
TspRI	CASTG	2 cut(s)	505, 1477
Van91I	CCANNNNNTGG	2 cut(s)	97, 1090
VneI	GTGCAC	1 cut(s)	1139
VpaK11BI	GGWCC	3 cut(s)	24, 833, 1780
XapI	RAATTY	3 cut(s)	134, 503, 1274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1717
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	4 cut(s)	29, 1073, 1238, 1497
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.