FvH4_3g44960

Protein of unknown function (DUF3752)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
37402725 .. 37403108
384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44960.t1

Sequence Viewer

Length: 384 bp
ATGACAGAGCTTCCACCGGAGAGGAAACATGGTACGAGTACAATGCAATCGACAATATTTAGCAGGAGTGCTAAACAAGGGCGTGGGGACACTAGCAGTTGGACTGATGCTCCTGAGAGAGCTCGAAAAGCTAAGATGGATTACTTACAAGCGTGTAATGAGTTTGCATCACTTGCTTCGAATGAGGAGGAGAGGAAGAGGAGTTTAGATGCAGAGTTAATGGACAGATACAATAAAGAGAAACGATCGAAGTCATTGTTACAAAAGCACAAAGAGGAGATTAGAGCGAGCCGTTTGAAGAGAAAGTACTCCAAGCAACAGGTAGAGGTCCAGTATTGTGAGGTTAGTCAGGTTGATAATTTTATCATTAATGGCTCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.79

Weight (kDa)

9.54

Isoelectric Point (pI)

64.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3752 PF12572 5 - 98 2e-13 Protein of unknown function (DUF3752)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 34, 40, 308
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 3 cut(s) 10, 122, 131
AluI AGCT 3 cut(s) 10, 122, 131
Alw21I GWGCWC 1 cut(s) 124
AseI ATTAAT 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
Bbv12I GWGCWC 1 cut(s) 124
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BfaI CTAG 1 cut(s) 93
BmcAI AGTACT 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 376
BmsI GCATC 3 cut(s) 97, 176, 199
BpmI CTGGAG 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse1I ACTGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 4 cut(s) 200, 203, 214, 290
Bsh1285I CGRYCG 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 179
BsrI ACTGG 1 cut(s) 331
BssMI GATC 1 cut(s) 245
Bst6I CTCTTC 2 cut(s) 191, 293
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 114, 132
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 128, 173
Cac8I GCNNGC 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 3 cut(s) 33, 39, 307
CviAII CATG 1 cut(s) 29
CviJI RGCY 5 cut(s) 10, 122, 131, 291, 375
CviKI_1 RGCY 5 cut(s) 10, 122, 131, 291, 375
CviQI GTAC 3 cut(s) 33, 39, 307
DdeI CTNAG 2 cut(s) 114, 132
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 191, 293
EarI CTCTTC 2 cut(s) 191, 293
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 1 cut(s) 32
FaiI YATR 1 cut(s) 30
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 124
FspBI CTAG 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 361
HapII CCGG 1 cut(s) 17
Hin1II CATG 1 cut(s) 32
HpaII CCGG 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 113, 378
HpyCH4V TGCA 3 cut(s) 46, 167, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 173
HpyF3I CTNAG 2 cut(s) 114, 132
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 115, 380
LpnPI CCDG 6 cut(s) 30, 49, 126, 305, 335, 344
LweI GCATC 3 cut(s) 97, 176, 199
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 258
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 2 cut(s) 208, 310
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 8 cut(s) 15, 178, 181, 186, 192, 268, 319, 334
MseI TTAA 2 cut(s) 218, 369
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 128, 173
NdeII GATC 1 cut(s) 245
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 376
NspV TTCGAA 1 cut(s) 179
Ple19I CGATCG 1 cut(s) 248
PshBI ATTAAT 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 328
PvuI CGATCG 1 cut(s) 248
RsaI GTAC 3 cut(s) 34, 40, 308
RsaNI GTAC 3 cut(s) 33, 39, 307
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 218, 369
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 328
ScaI AGTACT 1 cut(s) 308
SduI GDGCHC 1 cut(s) 124
SetI ASST 7 cut(s) 12, 124, 133, 324, 330, 345, 354
SfaNI GCATC 3 cut(s) 97, 176, 199
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 1 cut(s) 328
Sse9I AATT 1 cut(s) 358
SspI AATATT 1 cut(s) 57
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 124
TaqI TCGA 4 cut(s) 50, 124, 179, 248
TasI AATT 1 cut(s) 358
TatI WGTACW 2 cut(s) 38, 306
Tru1I TTAA 2 cut(s) 218, 369
Tru9I TTAA 2 cut(s) 218, 369
VpaK11BI GGWCC 1 cut(s) 328
VspI ATTAAT 1 cut(s) 369
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.