Rmu_sc0012399.1_g000001

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012399.1
OG0001274
Physical Location & Seq
Reverse (-)
2935 .. 4543
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012399.1_g000001.1.cds

Sequence Viewer

Length: 1521 bp
atgggcagtaaaagtaagaggatgaaacatctaggctacacgagtaaccattctgtccgttcatcaatttcctctccttcaagctccgacgattctaaacgcttttccaagacgcgtcatctccaccgtcttgatgacacttccaaaagaggcaaacagaggcaaagggacaaggccaagaaacagaggagcaaaagtgaggcaaggagaatgaaatcgaaagacaacgataagaagaagcagagagcttatgagattgatgatgattctgaatctgggtcttcgagcggtggtgatccgcaagcggttgtgcgagacttgttgaaggaatttcctaatattgggtgcgatttgaagcagcttttgcaagtgatcgatgggggcaaagcggttgacataaatggactagctcagaaacctctgatcaagcctctcaggactctgttcctttccttgaatctcaaggaactgaatcacggaggttttgtactgcctccaaatgttcgtccaactttggaggttgttggttccatgattacgtcttctttagatcatgttgttgctcctgagagaaggccaattggcccggagaagccgtcgccggagatacttgaagctgcagccaaattgagagaggcagaggccgagttaagggaagctgagttggaagaaaaagatgatggggatgattgcccatatgagatactaggatcaaaccacaatgtgtctgctgatagcatcaagaaaaggtactggaagttgtcacttttggtgcaccctgataaatgctcacaccctcaagccaaccaagcatttgtgaagctgaacaaggcctttaaagagctacaggatccgcagaagcggagagcactggatgagaagattgagctcagggagaagcaggagagattcattgttgagttgagggcaatgcgggaaacagcaatgtggagaaggatgcaggggatttccatggagggtgatgaggagctactggcaggtgatgtgagtggtgttaaagcggcacgaaaaagagatgagtggatgacagagcttccaccagagaggaaacatggtatgagtccaaggcagtcgacaatgtttagcaggagtgctaaacaaaggcgtggggataccagtggatggactgatgctccttctgaaagagcttggaaagctaagatggagtacttacaagcctataatgagtttgcatcacttgcttcgaatgaggaggagaggaagaggagtttagtggcagagttgatggacaattataagaaagataaacgatcgaaatcattgctgcaaaagcaccaagaggagattagagcaaagagaaaatactccaagcaacaggcagaggaggaagactgggtggggaaacatccgtggaagccttgggaccgtgagaaagatttggcaggtggtagacaacgtgtgaaattggattcaaaaaacatgactcgaggtttgtcatctcggttttctggaggatcataccagaggaacttcctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

506

Amino Acids

57.99

Weight (kDa)

9.64

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1278
AarI CACCTGC 2 cut(s) 989, 1415
Acc36I ACCTGC 2 cut(s) 989, 1415
AccB7I CCANNNNNTGG 1 cut(s) 1143
AccBSI CCGCTC 1 cut(s) 288
AccI GTMKAC 2 cut(s) 1094, 1432
AccII CGCG 1 cut(s) 115
AciI CCGC 8 cut(s) 288, 299, 305, 389, 854, 862, 934, 1022
AclWI GGATC 5 cut(s) 290, 718, 845, 858, 1504
AcsI RAATTY 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 724
AfaI GTAC 3 cut(s) 489, 752, 1190
AfiI CCNNNNNNNGG 3 cut(s) 341, 651, 1143
AflIII ACRYGT 2 cut(s) 113, 1438
AgsI TTSAA 6 cut(s) 81, 325, 355, 457, 614, 1455
Alw21I GWGCWC 3 cut(s) 777, 871, 891
Alw26I GTCTC 1 cut(s) 309
Alw44I GTGCAC 1 cut(s) 773
AlwI GGATC 5 cut(s) 290, 718, 845, 858, 1504
Ama87I CYCGRG 1 cut(s) 1467
AoxI GGCC 5 cut(s) 174, 575, 583, 642, 831
ApaLI GTGCAC 1 cut(s) 773
ApeKI GCWGC 4 cut(s) 358, 617, 620, 1306
ApoI RAATTY 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 1456, 1488
AspS9I GGNCC 2 cut(s) 584, 1405
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 3 cut(s) 305, 992, 1013
AsuII TTCGAA 1 cut(s) 1226
AvaI CYCGRG 1 cut(s) 1467
AvaII GGWCC 1 cut(s) 1405
BaeGI GKGCMC 1 cut(s) 777
BamHI GGATCC 1 cut(s) 850
BanII GRGCYC 1 cut(s) 891
BauI CACGAG 1 cut(s) 40
BbsI GAAGAC 3 cut(s) 273, 534, 1377
Bbv12I GWGCWC 3 cut(s) 777, 871, 891
BbvI GCAGC 4 cut(s) 370, 604, 632, 1293
BccI CCATC 5 cut(s) 371, 674, 1137, 1177, 1261
BceAI ACGGC 1 cut(s) 580
BcgI CGANNNNNNTGC 2 cut(s) 1285, 1319
BciVI GTATCC 1 cut(s) 1126
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 1 cut(s) 587
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 3 cut(s) 32, 407, 707
BfmI CTRYAG 2 cut(s) 618, 845
BfuAI ACCTGC 2 cut(s) 989, 1415
BfuI GTATCC 1 cut(s) 1126
BisI GCNGC 5 cut(s) 359, 618, 621, 1023, 1307
BlsI GCNGC 5 cut(s) 360, 619, 622, 1024, 1308
BmcAI AGTACT 1 cut(s) 1190
Bme1390I CCNGG 1 cut(s) 587
Bme18I GGWCC 1 cut(s) 1405
BmeT110I CYCGRG 1 cut(s) 1467
BmgT120I GGNCC 2 cut(s) 584, 1405
BmiI GGNNCC 3 cut(s) 529, 852, 1406
BmrFI CCNGG 1 cut(s) 587
BmrI ACTGGG 1 cut(s) 1384
BmsI GCATC 4 cut(s) 747, 948, 1141, 1223
BmuI ACTGGG 1 cut(s) 1384
BpiI GAAGAC 3 cut(s) 273, 534, 1377
BpmI CTGGAG 1 cut(s) 1512
Bpu10I CCTNAGC 1 cut(s) 890
Bpu14I TTCGAA 1 cut(s) 1226
BpuEI CTTGAG 2 cut(s) 446, 783
BpuMI CCSGG 1 cut(s) 587
Bsa29I ATCGAT 1 cut(s) 375
BsaBI GATNNNNATC 1 cut(s) 1297
BsaJI CCNNGG 4 cut(s) 972, 1085, 1391, 1400
BsaXI ACNNNNNCTCC 8 cut(s) 181, 211, 471, 501, 581, 611, 1138, 1168
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 651, 1143
Bse1I ACTGG 5 cut(s) 758, 876, 999, 1137, 1379
Bse3DI GCAATG 3 cut(s) 936, 951, 1301
Bse8I GATNNNNATC 1 cut(s) 1297
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 4 cut(s) 972, 1085, 1391, 1400
BseGI GGATG 7 cut(s) 27, 691, 880, 963, 1050, 1148, 1387
BseJI GATNNNNATC 1 cut(s) 1297
BseLI CCNNNNNNNGG 3 cut(s) 341, 651, 1143
BseMI GCAATG 3 cut(s) 936, 951, 1301
BseMII CTCAG 5 cut(s) 425, 448, 558, 651, 904
BseNI ACTGG 5 cut(s) 758, 876, 999, 1137, 1379
BseRI GAGGAG 7 cut(s) 202, 1001, 1247, 1250, 1261, 1337, 1379
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 4 cut(s) 370, 604, 632, 1293
Bsh1236I CGCG 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 1295
BshFI GGCC 5 cut(s) 176, 577, 585, 644, 833
BshVI ATCGAT 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 1295
BsiHKAI GWGCWC 3 cut(s) 777, 871, 891
BsiHKCI CYCGRG 1 cut(s) 1467
BsiSI CCGG 2 cut(s) 587, 602
BslFI GGGAC 2 cut(s) 182, 1418
BslI CCNNNNNNNGG 3 cut(s) 341, 651, 1143
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 182, 1418
BsnI GGCC 5 cut(s) 176, 577, 585, 644, 833
BsoBI CYCGRG 1 cut(s) 1467
Bsp119I TTCGAA 1 cut(s) 1226
Bsp1286I GDGCHC 3 cut(s) 777, 871, 891
Bsp143I GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 8 cut(s) 288, 299, 305, 389, 854, 862, 934, 1022
BspANI GGCC 5 cut(s) 176, 577, 585, 644, 833
BspCNI CTCAG 5 cut(s) 424, 447, 559, 652, 903
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 529, 852, 1406
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 2 cut(s) 989, 1415
BspPI GGATC 5 cut(s) 290, 718, 845, 858, 1504
BspT104I TTCGAA 1 cut(s) 1226
BsrBI CCGCTC 1 cut(s) 288
BsrDI GCAATG 3 cut(s) 936, 951, 1301
BsrI ACTGG 5 cut(s) 758, 876, 999, 1137, 1379
BssECI CCNNGG 4 cut(s) 972, 1085, 1391, 1400
BssMI GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
BssSI CACGAG 1 cut(s) 40
BssT1I CCWWGG 3 cut(s) 972, 1085, 1400
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 128, 1409
Bst6I CTCTTC 1 cut(s) 1238
BstAPI GCANNNNNTGC 2 cut(s) 364, 1220
BstBI TTCGAA 1 cut(s) 1226
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 6 cut(s) 411, 434, 567, 660, 890, 1179
BstDSI CCRYGG 2 cut(s) 972, 1391
BstF5I GGATG 7 cut(s) 27, 691, 880, 963, 1050, 1148, 1387
BstFNI CGCG 1 cut(s) 115
BstKTI GATC 8 cut(s) 298, 375, 426, 553, 713, 853, 1295, 1499
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
BstMCI CGRYCG 1 cut(s) 1295
BstMWI GCNNNNNNNGC 5 cut(s) 364, 809, 1175, 1220, 1312
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 618, 845
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 4 cut(s) 370, 604, 632, 1293
BstV2I GAAGAC 3 cut(s) 273, 534, 1377
BstX2I RGATCY 1 cut(s) 850
BstYI RGATCY 1 cut(s) 850
Bsu15I ATCGAT 1 cut(s) 375
BsuI GTATCC 1 cut(s) 1126
BsuRI GGCC 5 cut(s) 176, 577, 585, 644, 833
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 2 cut(s) 972, 1391
BtsCI GGATG 7 cut(s) 27, 691, 880, 963, 1050, 1148, 1387
BtsIMutI CAGTG 2 cut(s) 869, 1144
BveI ACCTGC 2 cut(s) 989, 1415
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 584, 1405
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 2 cut(s) 104, 121
Csp6I GTAC 3 cut(s) 488, 751, 1189
CviAII CATG 5 cut(s) 532, 554, 973, 1073, 1462
CviQI GTAC 3 cut(s) 488, 751, 1189
DdeI CTNAG 6 cut(s) 411, 434, 567, 660, 890, 1179
DpnI GATC 8 cut(s) 297, 374, 425, 552, 712, 852, 1294, 1498
DpnII GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
DraI TTTAAA 1 cut(s) 838
DraIII CACNNNGTG 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 1238
EarI CTCTTC 1 cut(s) 1238
Ecl136II GAGCTC 1 cut(s) 889
Eco130I CCWWGG 3 cut(s) 972, 1085, 1400
Eco147I AGGCCT 1 cut(s) 833
Eco24I GRGCYC 1 cut(s) 891
Eco47I GGWCC 1 cut(s) 1405
Eco53kI GAGCTC 1 cut(s) 889
Eco88I CYCGRG 1 cut(s) 1467
EcoICRI GAGCTC 1 cut(s) 889
EcoT14I CCWWGG 3 cut(s) 972, 1085, 1400
EcoT38I GRGCYC 1 cut(s) 891
ErhI CCWWGG 3 cut(s) 972, 1085, 1400
FaeI CATG 5 cut(s) 535, 557, 976, 1076, 1465
FaqI GGGAC 2 cut(s) 182, 1418
FatI CATG 5 cut(s) 531, 553, 972, 1072, 1461
FauI CCCGC 1 cut(s) 927
FauNDI CATATG 1 cut(s) 697
FbaI TGATCA 1 cut(s) 423
FblI GTMKAC 2 cut(s) 1094, 1432
Fnu4HI GCNGC 5 cut(s) 359, 618, 621, 1023, 1307
FokI GGATG 7 cut(s) 34, 698, 887, 970, 1057, 1155, 1374
FriOI GRGCYC 1 cut(s) 891
Fsp4HI GCNGC 5 cut(s) 359, 618, 621, 1023, 1307
FspBI CTAG 3 cut(s) 32, 407, 707
GluI GCNGC 5 cut(s) 359, 618, 621, 1023, 1307
GsuI CTGGAG 1 cut(s) 1512
HaeIII GGCC 5 cut(s) 176, 577, 585, 644, 833
HapII CCGG 2 cut(s) 587, 602
HgaI GACGC 2 cut(s) 104, 121
Hin1II CATG 5 cut(s) 535, 557, 976, 1076, 1465
HincII GTYRAC 2 cut(s) 394, 1095
HindII GTYRAC 2 cut(s) 394, 1095
HpaII CCGG 2 cut(s) 587, 602
HphI GGTGA 3 cut(s) 305, 992, 1013
Hpy166II GTNNAC 4 cut(s) 394, 775, 1095, 1433
Hpy188I TCNGA 5 cut(s) 88, 271, 414, 423, 1162
Hpy188III TCNNGA 5 cut(s) 131, 436, 566, 742, 1491
Hpy8I GTNNAC 4 cut(s) 394, 775, 1095, 1433
Hpy99I CGWCG 2 cut(s) 92, 601
HpyAV CCTTC 5 cut(s) 87, 319, 567, 948, 1167
HpyCH4III ACNGT 2 cut(s) 128, 1409
HpyCH4IV ACGT 2 cut(s) 539, 1438
HpyCH4V TGCA 6 cut(s) 367, 620, 775, 961, 1214, 1309
HpyF10VI GCNNNNNNNGC 5 cut(s) 364, 809, 1175, 1220, 1312
HpyF3I CTNAG 6 cut(s) 411, 434, 567, 660, 890, 1179
HpySE526I ACGT 2 cut(s) 539, 1438
Hsp92II CATG 5 cut(s) 535, 557, 976, 1076, 1465
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
LmnI GCTCC 5 cut(s) 89, 189, 568, 988, 1159
Lsp1109I GCAGC 4 cut(s) 370, 604, 632, 1293
LweI GCATC 4 cut(s) 747, 948, 1141, 1223
MaeI CTAG 3 cut(s) 32, 407, 707
MaeII ACGT 2 cut(s) 539, 1438
MaeIII GTNAC 2 cut(s) 44, 762
MalI GATC 8 cut(s) 297, 374, 425, 552, 712, 852, 1294, 1498
MbiI CCGCTC 1 cut(s) 288
MboI GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
MboII GAAGA 7 cut(s) 247, 273, 534, 680, 892, 1255, 1382
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 3 cut(s) 777, 871, 891
MluCI AATT 6 cut(s) 66, 329, 579, 626, 1273, 1445
MluI ACGCGT 1 cut(s) 113
MlyI GAGTC 3 cut(s) 433, 1090, 1459
MmeI TCCRAC 3 cut(s) 111, 533, 645
MseI TTAA 3 cut(s) 650, 837, 1017
MspI CCGG 2 cut(s) 587, 602
MspR9I CCNGG 1 cut(s) 587
MunI CAATTG 1 cut(s) 579
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 5 cut(s) 364, 809, 1175, 1220, 1312
NciI CCSGG 1 cut(s) 587
NcoI CCATGG 1 cut(s) 972
NdeI CATATG 1 cut(s) 697
NdeII GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
NlaIII CATG 5 cut(s) 535, 557, 976, 1076, 1465
NlaIV GGNNCC 3 cut(s) 529, 852, 1406
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 1 cut(s) 762
NspV TTCGAA 1 cut(s) 1226
PaeR7I CTCGAG 1 cut(s) 1467
PaqCI CACCTGC 2 cut(s) 989, 1415
PceI AGGCCT 1 cut(s) 833
PfeI GAWTC 7 cut(s) 92, 266, 272, 457, 472, 909, 1451
PflMI CCANNNNNTGG 1 cut(s) 1143
PkrI GCNGC 5 cut(s) 360, 619, 622, 1024, 1308
Ple19I CGATCG 1 cut(s) 1295
PleI GAGTC 3 cut(s) 433, 1089, 1459
PpsI GAGTC 3 cut(s) 433, 1089, 1459
PsiI TTATAA 1 cut(s) 1278
Psp124BI GAGCTC 1 cut(s) 891
PspN4I GGNNCC 3 cut(s) 529, 852, 1406
PspPI GGNCC 2 cut(s) 584, 1405
PspXI VCTCGAGB 1 cut(s) 1467
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 1 cut(s) 850
PvuI CGATCG 1 cut(s) 1295
RsaI GTAC 3 cut(s) 489, 752, 1190
RsaNI GTAC 3 cut(s) 488, 751, 1189
SacI GAGCTC 1 cut(s) 891
SalI GTCGAC 1 cut(s) 1093
SaqAI TTAA 3 cut(s) 650, 837, 1017
SatI GCNGC 5 cut(s) 359, 618, 621, 1023, 1307
Sau3AI GATC 8 cut(s) 295, 372, 423, 550, 710, 850, 1292, 1496
Sau96I GGNCC 2 cut(s) 584, 1405
ScaI AGTACT 1 cut(s) 1190
SchI GAGTC 3 cut(s) 433, 1090, 1459
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 3 cut(s) 777, 871, 891
SfaNI GCATC 4 cut(s) 747, 948, 1141, 1223
SfcI CTRYAG 2 cut(s) 618, 845
Sfr274I CTCGAG 1 cut(s) 1467
SfuI TTCGAA 1 cut(s) 1226
SinI GGWCC 1 cut(s) 1405
SlaI CTCGAG 1 cut(s) 1467
SmlI CTYRAG 3 cut(s) 461, 798, 1467
SmoI CTYRAG 3 cut(s) 461, 798, 1467
Sse9I AATT 6 cut(s) 66, 329, 579, 626, 1273, 1445
SseBI AGGCCT 1 cut(s) 833
SsiI CCGC 8 cut(s) 288, 299, 305, 389, 854, 862, 934, 1022
SspI AATATT 1 cut(s) 340
SspMI CTAG 3 cut(s) 32, 407, 707
SstI GAGCTC 1 cut(s) 891
StuI AGGCCT 1 cut(s) 833
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 3 cut(s) 972, 1085, 1400
TaaI ACNGT 2 cut(s) 128, 1409
TaiI ACGT 2 cut(s) 542, 1441
TaqI TCGA 7 cut(s) 218, 284, 375, 1094, 1226, 1295, 1468
TasI AATT 6 cut(s) 66, 329, 579, 626, 1273, 1445
TatI WGTACW 2 cut(s) 487, 1188
TauI GCSGC 1 cut(s) 1025
TfiI GAWTC 7 cut(s) 92, 266, 272, 457, 472, 909, 1451
Tru1I TTAA 3 cut(s) 650, 837, 1017
Tru9I TTAA 3 cut(s) 650, 837, 1017
TscAI CASTG 2 cut(s) 876, 1144
TseFI GTSAC 1 cut(s) 762
TseI GCWGC 4 cut(s) 358, 617, 620, 1306
Tsp45I GTSAC 1 cut(s) 762
TspDTI ATGAA 4 cut(s) 38, 51, 227, 901
TspGWI ACGGA 3 cut(s) 47, 492, 1380
TspRI CASTG 2 cut(s) 876, 1144
Van91I CCANNNNNTGG 1 cut(s) 1143
VneI GTGCAC 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 1405
XapI RAATTY 1 cut(s) 329
XhoI CTCGAG 1 cut(s) 1467
XmiI GTMKAC 2 cut(s) 1094, 1432
XspI CTAG 3 cut(s) 32, 407, 707
ZrmI AGTACT 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.