Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Forward (+)

87163748 .. 87164086

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG565100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGTACTTACAAGCCTATAATGAGTTTGCATCACTTGCTTCGAATGAGGAGGAGAGGAAGAGGAGTTTAGTGGCAGAGTTGATGGACAATTACAAGAAAGATAAACGATCGAAATCATTGCTGCAAAAGCACCAAGAGGAGATTAGAGCGAAGAGAAAATACTCCAAGCAACAGGCAGAGGAGGAAGACTGGGTGGGGAAACATCCGTGGAAGCCTTGGGACCGTGAGAAAGATTTGGCAGGTGGTAGACAACGTGTGAAATTGGATTCAAGAAACATGACTCGAGGTTTGTCATCTCGGTTTTCTGGAGGATCATACCAGAGGAACTTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

112

Amino Acids

13.38

Weight (kDa)

9.69

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3752	PF12572	4 - 103	4.3e-16	Protein of unknown function (DUF3752)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	250
AclWI	GGATC	1 cut(s)	322
AfaI	GTAC	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	273
AlwI	GGATC	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	274, 306
AspS9I	GGNCC	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	146, 178
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmcAI	AGTACT	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	209, 218
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	209, 218
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	5 cut(s)	65, 68, 79, 155, 197
BseXI	GCAGC	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	110, 314
BspLI	GGNNCC	1 cut(s)	224
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	322
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	209, 218
BssMI	GATC	2 cut(s)	110, 314
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	56, 149
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	2 cut(s)	113, 317
BstMBI	GATC	2 cut(s)	110, 314
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 130
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	2 cut(s)	17, 217
CviKI_1	RGCY	2 cut(s)	17, 217
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	2 cut(s)	112, 316
DpnII	GATC	2 cut(s)	110, 314
Eam1104I	CTCTTC	2 cut(s)	56, 149
EarI	CTCTTC	2 cut(s)	56, 149
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	283
FaiI	YATR	3 cut(s)	21, 281, 319
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	330
Hin1II	CATG	1 cut(s)	283
HinfI	GANTC	2 cut(s)	269, 283
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	273, 309
Hpy8I	GTNNAC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	32, 127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 130
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	110, 314
LpnPI	CCDG	5 cut(s)	161, 178, 228, 294, 335
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	41
MaeII	ACGT	1 cut(s)	256
MalI	GATC	2 cut(s)	112, 316
MboI	GATC	2 cut(s)	110, 314
MboII	GAAGA	3 cut(s)	73, 166, 200
MluCI	AATT	2 cut(s)	91, 263
MlyI	GAGTC	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	38, 130
NdeII	GATC	2 cut(s)	110, 314
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	285
PaqCI	CACCTGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	126
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	223
PspXI	VCTCGAGB	1 cut(s)	285
PvuI	CGATCG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	110, 314
Sau96I	GGNCC	1 cut(s)	223
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	277
SetI	ASST	3 cut(s)	247, 259, 292
SfaNI	GCATC	1 cut(s)	41
Sfr274I	CTCGAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	91, 263
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	44, 113, 286
TasI	AATT	2 cut(s)	91, 263
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.