Rmu_sc0002176.1_g000036

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002176.1
OG0001274
Physical Location & Seq
Forward (+)
129291 .. 130405
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002176.1_g000036.1.cds

Sequence Viewer

Length: 1019 bp
atgggaagtaaaagtaagaggatgaaacatctaggctacacgggtaaccattctgtccactcatcaatatcctctccttcaagatccgaggattctaaatgcttttccaagacgcgtcatctccaccgccccgatgacacttccaaaacagacaaacaaaggcaaagggtgaaggccgagaaacagaggagcaaaagtgaggcaaggagaatgaaatcgaaagacaacgataagaagaagcagagagcttatgagattgatgatgattctgaatctgggtcttcgagcggtggtgatccgcaagcggttgtgcgagacttgttgaaggaatttcctaatattgggtgcgatttgaagcagcttttgcaagtgatcgatgggggcaaagcggttgacataaagggactagctcagaaacctctgatcaagcctctcaggactctgttcctttccttgaatctcaaggaactgaatcacggaggttttgtactgcctccaagtgttcgtccgactttggaggttgttgccaaattgagagaggcagaggccaagttaagggaagctgagttggaagaaaaagatgatggggtttttattggacctgcaccacgtgctgtggcggctgaagctgaatcagctaaccaggctgaccggtttgaagaggtgacaaggatcacggaagcagaggatgatagcccctatgagatactaggagcaagccacaatgtgtctgctgataacatcaagaaaaggtactggaagttgtcacttgtggtgcaccctgataaatgctcacaccctcaagccaaccaagcatttgtgaagctgaacaaggcctttaaagaactacaggatccggagaagcggagagcgctggatgagaagattgagctcagggagaagcaggagagattcattgttgagttgagggtaatgcgggaagcagcaatgtggagaaagatgcaggggatttccatggagggtgatgaggagctactggcaggtgatgtgagtggtgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

340

Amino Acids

38.28

Weight (kDa)

8.87

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 992
Acc36I ACCTGC 2 cut(s) 610, 992
AccBSI CCGCTC 1 cut(s) 288
AccII CGCG 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 856
AciI CCGC 8 cut(s) 127, 288, 299, 305, 389, 620, 865, 937
AclWI GGATC 5 cut(s) 78, 290, 680, 848, 861
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 645
AcvI CACGTG 1 cut(s) 611
AdeI CACNNNGTG 2 cut(s) 611, 727
AfaI GTAC 2 cut(s) 489, 755
AfeI AGCGCT 1 cut(s) 873
AfiI CCNNNNNNNGG 2 cut(s) 341, 555
AflIII ACRYGT 1 cut(s) 113
AgeI ACCGGT 1 cut(s) 651
AgsI TTSAA 5 cut(s) 81, 325, 355, 457, 659
AjnI CCWGG 1 cut(s) 642
AluBI AGCT 9 cut(s) 248, 361, 410, 563, 629, 638, 826, 892, 994
AluI AGCT 9 cut(s) 248, 361, 410, 563, 629, 638, 826, 892, 994
Alw21I GWGCWC 2 cut(s) 780, 894
Alw26I GTCTC 1 cut(s) 309
Alw44I GTGCAC 1 cut(s) 776
AlwI GGATC 5 cut(s) 78, 290, 680, 848, 861
Aor13HI TCCGGA 1 cut(s) 856
Aor51HI AGCGCT 1 cut(s) 873
AoxI GGCC 3 cut(s) 174, 546, 834
ApaLI GTGCAC 1 cut(s) 776
ApeKI GCWGC 2 cut(s) 358, 944
ApoI RAATTY 1 cut(s) 329
AsiGI ACCGGT 1 cut(s) 651
AspLEI GCGC 1 cut(s) 874
AspS9I GGNCC 1 cut(s) 599
AsuHPI GGTGA 5 cut(s) 181, 305, 676, 995, 1016
AvaII GGWCC 1 cut(s) 599
BaeGI GKGCMC 1 cut(s) 780
BamHI GGATCC 1 cut(s) 853
BanII GRGCYC 1 cut(s) 894
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 780, 894
BbvI GCAGC 2 cut(s) 370, 956
BccI CCATC 2 cut(s) 371, 578
BciT130I CCWGG 1 cut(s) 644
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 3 cut(s) 32, 407, 710
BfmI CTRYAG 1 cut(s) 848
BfoI RGCGCY 1 cut(s) 875
BfuAI ACCTGC 2 cut(s) 610, 992
BisI GCNGC 3 cut(s) 359, 621, 945
BlsI GCNGC 3 cut(s) 360, 622, 946
Bme1390I CCNGG 1 cut(s) 644
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 855
BmrFI CCNGG 1 cut(s) 644
BmsI GCATC 1 cut(s) 951
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 893
BpuEI CTTGAG 2 cut(s) 446, 786
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 87, 975
BsaWI WCCGGW 2 cut(s) 651, 856
BsaXI ACNNNNNCTCC 4 cut(s) 181, 211, 471, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 555
Bse118I RCCGGY 1 cut(s) 651
Bse1I ACTGG 2 cut(s) 761, 1002
Bse3DI GCAATG 1 cut(s) 954
BseAI TCCGGA 1 cut(s) 856
BseBI CCWGG 1 cut(s) 644
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 87, 975
BseGI GGATG 3 cut(s) 27, 694, 883
BseLI CCNNNNNNNGG 2 cut(s) 341, 555
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 4 cut(s) 425, 448, 555, 907
BseNI ACTGG 2 cut(s) 761, 1002
BseRI GAGGAG 2 cut(s) 202, 1004
BseSI GKGCMC 1 cut(s) 780
BseXI GCAGC 2 cut(s) 370, 956
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 3 cut(s) 176, 548, 836
BshTI ACCGGT 1 cut(s) 651
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 780, 894
BsiSI CCGG 2 cut(s) 652, 857
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 2 cut(s) 341, 555
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 3 cut(s) 176, 548, 836
Bsp1286I GDGCHC 2 cut(s) 780, 894
Bsp13I TCCGGA 1 cut(s) 856
Bsp143I GATC 6 cut(s) 83, 295, 372, 423, 672, 853
Bsp19I CCATGG 1 cut(s) 975
BspACI CCGC 8 cut(s) 127, 288, 299, 305, 389, 620, 865, 937
BspANI GGCC 3 cut(s) 176, 548, 836
BspCNI CTCAG 4 cut(s) 424, 447, 556, 906
BspDI ATCGAT 1 cut(s) 375
BspEI TCCGGA 1 cut(s) 856
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 855
BspMI ACCTGC 2 cut(s) 610, 992
BspPI GGATC 5 cut(s) 78, 290, 680, 848, 861
BsrBI CCGCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 954
BsrFI RCCGGY 1 cut(s) 651
BsrI ACTGG 2 cut(s) 761, 1002
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 2 cut(s) 87, 975
BssMI GATC 6 cut(s) 83, 295, 372, 423, 672, 853
BssT1I CCWWGG 1 cut(s) 975
Bst2UI CCWGG 1 cut(s) 644
Bst6I CTCTTC 1 cut(s) 654
BstAPI GCANNNNNTGC 2 cut(s) 364, 611
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 303, 718
BstDEI CTNAG 4 cut(s) 411, 434, 564, 893
BstDSI CCRYGG 1 cut(s) 975
BstEII GGTNACC 1 cut(s) 44
BstF5I GGATG 3 cut(s) 27, 694, 883
BstFNI CGCG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 875
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 6 cut(s) 86, 298, 375, 426, 675, 856
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 6 cut(s) 83, 295, 372, 423, 672, 853
BstMWI GCNNNNNNNGC 8 cut(s) 364, 611, 620, 626, 635, 644, 812, 871
BstNI CCWGG 1 cut(s) 644
BstPI GGTNACC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 642
BstSFI CTRYAG 1 cut(s) 848
BstSLI GKGCMC 1 cut(s) 780
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 370, 956
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 83, 853
BstYI RGATCY 2 cut(s) 83, 853
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 3 cut(s) 176, 548, 836
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 975
BtsCI GGATG 3 cut(s) 27, 694, 883
BveI ACCTGC 2 cut(s) 610, 992
Cac8I GCNNGC 2 cut(s) 303, 718
CfoI GCGC 1 cut(s) 874
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 599
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 2 cut(s) 104, 121
Csp6I GTAC 2 cut(s) 488, 754
CspAI ACCGGT 1 cut(s) 651
CviAII CATG 1 cut(s) 976
CviQI GTAC 2 cut(s) 488, 754
DdeI CTNAG 4 cut(s) 411, 434, 564, 893
DpnI GATC 6 cut(s) 85, 297, 374, 425, 674, 855
DpnII GATC 6 cut(s) 83, 295, 372, 423, 672, 853
DraI TTTAAA 1 cut(s) 841
DraIII CACNNNGTG 2 cut(s) 611, 727
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 1 cut(s) 975
Eco147I AGGCCT 1 cut(s) 836
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 599
Eco47III AGCGCT 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 645
Eco72I CACGTG 1 cut(s) 611
Eco91I GGTNACC 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 892
EcoO65I GGTNACC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 642
EcoT14I CCWWGG 1 cut(s) 975
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 975
FaeI CATG 1 cut(s) 979
FaiI YATR 4 cut(s) 252, 398, 702, 977
FaqI GGGAC 1 cut(s) 417
FatI CATG 1 cut(s) 975
FauI CCCGC 1 cut(s) 930
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 359, 621, 945
FokI GGATG 3 cut(s) 34, 701, 890
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 359, 621, 945
FspBI CTAG 3 cut(s) 32, 407, 710
GlaI GCGC 1 cut(s) 873
GluI GCNGC 3 cut(s) 359, 621, 945
HaeII RGCGCY 1 cut(s) 875
HaeIII GGCC 3 cut(s) 176, 548, 836
HapII CCGG 2 cut(s) 652, 857
HgaI GACGC 2 cut(s) 104, 121
HhaI GCGC 1 cut(s) 874
Hin1II CATG 1 cut(s) 979
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 8 cut(s) 92, 266, 272, 439, 457, 472, 632, 912
HpaII CCGG 2 cut(s) 652, 857
HphI GGTGA 5 cut(s) 181, 305, 676, 995, 1016
Hpy166II GTNNAC 3 cut(s) 58, 394, 778
Hpy188I TCNGA 5 cut(s) 88, 271, 414, 423, 510
Hpy188III TCNNGA 4 cut(s) 81, 436, 745, 857
Hpy8I GTNNAC 3 cut(s) 58, 394, 778
HpyAV CCTTC 3 cut(s) 87, 166, 319
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 4 cut(s) 367, 605, 778, 964
HpyF10VI GCNNNNNNNGC 8 cut(s) 364, 611, 620, 626, 635, 644, 812, 871
HpyF3I CTNAG 4 cut(s) 411, 434, 564, 893
HpySE526I ACGT 1 cut(s) 610
Hsp92II CATG 1 cut(s) 979
HspAI GCGC 1 cut(s) 872
Kpn2I TCCGGA 1 cut(s) 856
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 6 cut(s) 83, 295, 372, 423, 672, 853
LmnI GCTCC 3 cut(s) 189, 713, 991
Lsp1109I GCAGC 2 cut(s) 370, 956
LweI GCATC 1 cut(s) 951
MaeI CTAG 3 cut(s) 32, 407, 710
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 3 cut(s) 44, 664, 765
MalI GATC 6 cut(s) 85, 297, 374, 425, 674, 855
MbiI CCGCTC 1 cut(s) 288
MboI GATC 6 cut(s) 83, 295, 372, 423, 672, 853
MboII GAAGA 5 cut(s) 247, 273, 584, 671, 895
MflI RGATCY 2 cut(s) 83, 853
MhlI GDGCHC 2 cut(s) 780, 894
MluCI AATT 2 cut(s) 329, 530
MluI ACGCGT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 2 cut(s) 533, 549
MroI TCCGGA 1 cut(s) 856
MseI TTAA 2 cut(s) 554, 840
MspI CCGG 2 cut(s) 652, 857
MspR9I CCNGG 1 cut(s) 644
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 8 cut(s) 364, 611, 620, 626, 635, 644, 812, 871
NcoI CCATGG 1 cut(s) 975
NdeII GATC 6 cut(s) 83, 295, 372, 423, 672, 853
NlaIII CATG 1 cut(s) 979
NlaIV GGNNCC 1 cut(s) 855
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 664, 765
PaqCI CACCTGC 1 cut(s) 992
PceI AGGCCT 1 cut(s) 836
PfeI GAWTC 7 cut(s) 92, 266, 272, 457, 472, 632, 912
PinAI ACCGGT 1 cut(s) 651
PkrI GCNGC 3 cut(s) 360, 622, 946
PleI GAGTC 1 cut(s) 433
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 642
PspCI CACGTG 1 cut(s) 611
PspEI GGTNACC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 1 cut(s) 855
PspPI GGNCC 1 cut(s) 599
PsuI RGATCY 2 cut(s) 83, 853
RsaI GTAC 2 cut(s) 489, 755
RsaNI GTAC 2 cut(s) 488, 754
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 2 cut(s) 554, 840
SatI GCNGC 3 cut(s) 359, 621, 945
Sau3AI GATC 6 cut(s) 83, 295, 372, 423, 672, 853
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 2 cut(s) 780, 894
SfaNI GCATC 1 cut(s) 951
SfcI CTRYAG 1 cut(s) 848
SinI GGWCC 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 461, 801
SmoI CTYRAG 2 cut(s) 461, 801
Sse9I AATT 2 cut(s) 329, 530
SseBI AGGCCT 1 cut(s) 836
SsiI CCGC 8 cut(s) 127, 288, 299, 305, 389, 620, 865, 937
SspI AATATT 1 cut(s) 340
SspMI CTAG 3 cut(s) 32, 407, 710
SstI GAGCTC 1 cut(s) 894
StuI AGGCCT 1 cut(s) 836
StyD4I CCNGG 1 cut(s) 642
StyI CCWWGG 1 cut(s) 975
TaiI ACGT 1 cut(s) 613
TaqI TCGA 3 cut(s) 218, 284, 375
TasI AATT 2 cut(s) 329, 530
TatI WGTACW 1 cut(s) 487
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 7 cut(s) 92, 266, 272, 457, 472, 632, 912
Tru1I TTAA 2 cut(s) 554, 840
Tru9I TTAA 2 cut(s) 554, 840
TseFI GTSAC 2 cut(s) 664, 765
TseI GCWGC 2 cut(s) 358, 944
Tsp45I GTSAC 2 cut(s) 664, 765
TspDTI ATGAA 3 cut(s) 38, 227, 904
TspGWI ACGGA 2 cut(s) 492, 692
VneI GTGCAC 1 cut(s) 776
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 1 cut(s) 329
XspI CTAG 3 cut(s) 32, 407, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.