FvH4_3g44931

Protein of unknown function (DUF3752)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001274
Physical Location & Seq
Forward (+)
37401746 .. 37402108
363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44931.t1

Sequence Viewer

Length: 363 bp
ATGCAAAACAGAATGAAACCGAAAGACAACGATAAGAAGAAGAATAAGAAGAAGAGAGATCATGAGATTGATGATGATTCTGATTCTGTTTCTGGTGGTGATGCGCAAGCGGTTGTGCAAGACTTGCTGAAGGAGTTTCCGAATATCGGGTGCGATTTGAAGCAGCTTTTGCAATTGATCGATGGCGGCAAAGCGGTCGACATAAACGGAATAGGTCAGAAGTGTCTGATCAAGCCTCTCAGAGCTCTGTTCCTTTGCTTGGTTCTTAAGGAACTAGATCACGGATCTTTTGTTGCCTCCACATGTTCCTCCAACTTTGGAGGTTATTGGGTCCTTGATCACGCCTTGTTTAGATTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3752 DnaJ

Protein Analysis

121

Amino Acids

13.43

Weight (kDa)

8.35

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 105
AccI GTMKAC 1 cut(s) 198
AciI CCGC 3 cut(s) 110, 186, 194
AclWI GGATC 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 146, 259
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 2 cut(s) 166, 245
AluI AGCT 2 cut(s) 166, 245
Alw21I GWGCWC 1 cut(s) 247
AlwI GGATC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BclI TGATCA 2 cut(s) 228, 337
BfaI CTAG 1 cut(s) 275
BfrI CTTAAG 1 cut(s) 266
BisI GCNGC 2 cut(s) 164, 187
BlsI GCNGC 2 cut(s) 165, 188
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 332
BmsI GCATC 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 259
BseCI ATCGAT 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 146, 259
BseMII CTCAG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 180
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 146, 259
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 6 cut(s) 58, 177, 228, 277, 284, 337
BspACI CCGC 3 cut(s) 110, 186, 194
BspCNI CTCAG 1 cut(s) 252
BspDI ATCGAT 1 cut(s) 180
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 266
BssMI GATC 6 cut(s) 58, 177, 228, 277, 284, 337
Bst6I CTCTTC 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 266
BstAPI GCANNNNNTGC 2 cut(s) 124, 169
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 6 cut(s) 61, 180, 231, 280, 287, 340
BstMBI GATC 6 cut(s) 58, 177, 228, 277, 284, 337
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 124, 169
BstNSI RCATGY 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 331
ClaI ATCGAT 1 cut(s) 180
CviAII CATG 2 cut(s) 62, 303
CviJI RGCY 3 cut(s) 166, 235, 245
CviKI_1 RGCY 3 cut(s) 166, 235, 245
DdeI CTNAG 1 cut(s) 239
DpnI GATC 6 cut(s) 60, 179, 230, 279, 286, 339
DpnII GATC 6 cut(s) 58, 177, 228, 277, 284, 337
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 247
FaeI CATG 2 cut(s) 65, 306
FaiI YATR 3 cut(s) 63, 203, 304
FatI CATG 2 cut(s) 61, 302
FbaI TGATCA 2 cut(s) 228, 337
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 164, 187
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 164, 187
FspBI CTAG 1 cut(s) 275
FspI TGCGCA 1 cut(s) 105
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 164, 187
HhaI GCGC 1 cut(s) 106
Hin1II CATG 2 cut(s) 65, 306
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 77, 83
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 5 cut(s) 82, 141, 219, 228, 242
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 4, 118, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 169
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 2 cut(s) 65, 306
HspAI GCGC 1 cut(s) 104
Ksp22I TGATCA 2 cut(s) 228, 337
Kzo9I GATC 6 cut(s) 58, 177, 228, 277, 284, 337
LpnPI CCDG 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 275
MalI GATC 6 cut(s) 60, 179, 230, 279, 286, 339
MboI GATC 6 cut(s) 58, 177, 228, 277, 284, 337
MboII GAAGA 4 cut(s) 49, 52, 61, 64
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 4 cut(s) 246, 307, 314, 319
MseI TTAA 1 cut(s) 267
MspCI CTTAAG 1 cut(s) 266
MunI CAATTG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 124, 169
NdeII GATC 6 cut(s) 58, 177, 228, 277, 284, 337
NlaIII CATG 2 cut(s) 65, 306
NlaIV GGNNCC 1 cut(s) 332
NsbI TGCGCA 1 cut(s) 105
NspI RCATGY 1 cut(s) 306
PagI TCATGA 1 cut(s) 61
PciI ACATGT 1 cut(s) 302
PfeI GAWTC 2 cut(s) 77, 83
PkrI GCNGC 2 cut(s) 165, 188
PpuMI RGGWCCY 1 cut(s) 331
PscI ACATGT 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 331
PspPPI RGGWCCY 1 cut(s) 331
PsuI RGATCY 1 cut(s) 284
SacI GAGCTC 1 cut(s) 247
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 164, 187
Sau3AI GATC 6 cut(s) 58, 177, 228, 277, 284, 337
Sau96I GGNCC 1 cut(s) 331
SduI GDGCHC 1 cut(s) 247
SetI ASST 4 cut(s) 168, 217, 247, 325
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 173
SsiI CCGC 3 cut(s) 110, 186, 194
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 1 cut(s) 247
TaqI TCGA 2 cut(s) 180, 198
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 77, 83
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 2 cut(s) 222, 297
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 331
XceI RCATGY 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.