Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002723.1

Orthogroup ID

OG0001274

Physical Location & Seq

Genomic Coordinates Reverse (-)

182629 .. 183108

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002723.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgaaatcgaaagacaacgataagaagaagcagagagcttatgatattgatgatgattctgggtcttcaagcggtggtgatccgcaagcggttctgcgagacttgttgaaggaatttcctaatattgggtgcgatttgaagcagcttttgcaagttatcgatggtggcaaagcggttgacataaatggactagctcagaaacctctgatcaagcctctcaggactctgttcctttccttgaatctccaggaactgaatcacggaggttttgtactgcctccaaatgttcgtccaactttggaggttgttggttccatgattacgtcttctttagataatgttgttccccctgagagaaggccaaatggcccggcgaagccgacgccggagatacttgatcctgtagccaaattgagagaggcagaggccgagttaagcgaagctgagttggaagaaaaagatgatggggggtttttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0050780

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3752 DnaJ

Protein Analysis

159

Amino Acids

17.28

Weight (kDa)

4.8

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65280 AT1G65280
fragaria_vesca	FvH4_3g44892 FvH4_3g44892 FvH4_3g44892 FvH4_3g44931 FvH4_3g44932 FvH4_3g44960 FvH4_3g44966 FvH4_4g06470
malus_domestica	MD04G1003500.v1.1
prunus_persica	Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1 Prupe.8G058000_v2.0.a1
pyrus_communis	pycom04g00360
rosa_chinensis	RchiOBHm_Chr4g0398261 RchiOBHm_Chr5g0081671 RchiOBHm_Chr5g0082081 RchiOBHm_Chr5g0082701
rosa_laevigata	RLG00000036957 RLG00000036962 RLG00000036979
rosa_multiflora	Rmu_co8467303.1_g000001 Rmu_sc0000303.1_g000009 Rmu_sc0001687.1_g000002 Rmu_sc0002176.1_g000036 Rmu_sc0002723.1_g000006 Rmu_sc0002723.1_g000051 Rmu_sc0002723.1_g000052 Rmu_sc0004094.1_g000006 Rmu_sc0004835.1_g000037 Rmu_sc0012399.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343240
rosa_rugosa	Rorug04G0007200 Rorug04G0007300 Rorug05G0477600
rosa_samantha	Rh4AG084700 Rh4BG082100 Rh4CG092100 Rh4DG077200 Rh5AG529100 Rh5BG554300 Rh5BG554800 Rh5BG555700 Rh5CG577200 Rh5CG577700 Rh5CG578400 Rh5DG563900 Rh5DG564100 Rh5DG565000 Rh5DG565100
rosa_wichuraiana	Rw0G022970 Rw4G007040 Rw5G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	72, 83, 89, 173
AclWI	GGATC	2 cut(s)	74, 392
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	383
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	4 cut(s)	69, 109, 139, 241
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	4 cut(s)	38, 145, 194, 443
AluI	AGCT	4 cut(s)	38, 145, 194, 443
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	74, 392
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	3 cut(s)	359, 367, 426
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	57, 318
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	2 cut(s)	155, 458
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	248, 371
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	248, 371
BpiI	GAAGAC	2 cut(s)	57, 318
BpmI	CTGGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	4 cut(s)	209, 232, 342, 435
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	3 cut(s)	361, 369, 428
BshVI	ATCGAT	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	371, 386
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	361, 369, 428
Bsp143I	GATC	3 cut(s)	79, 207, 397
BspACI	CCGC	4 cut(s)	72, 83, 89, 173
BspANI	GGCC	3 cut(s)	361, 369, 428
BspCNI	CTCAG	4 cut(s)	208, 231, 343, 436
BspDI	ATCGAT	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	74, 392
BssMI	GATC	3 cut(s)	79, 207, 397
BssNI	GRCGYC	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	4 cut(s)	195, 218, 351, 444
BstKTI	GATC	3 cut(s)	82, 210, 400
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	3 cut(s)	79, 207, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	246, 369
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	2 cut(s)	57, 318
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	361, 369, 428
BsuTUI	ATCGAT	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	368
ClaI	ATCGAT	1 cut(s)	159
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	316
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	4 cut(s)	195, 218, 351, 444
DpnI	GATC	3 cut(s)	81, 209, 399
DpnII	GATC	3 cut(s)	79, 207, 397
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	319
FaiI	YATR	4 cut(s)	42, 182, 317, 478
FatI	CATG	1 cut(s)	315
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	361, 369, 428
HapII	CCGG	2 cut(s)	371, 386
HgaI	GACGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	4 cut(s)	56, 223, 241, 256
HpaII	CCGG	2 cut(s)	371, 386
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	198, 207
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	385
HpyAV	CCTTC	2 cut(s)	103, 351
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	4 cut(s)	195, 218, 351, 444
HpySE526I	ACGT	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	79, 207, 397
LpnPI	CCDG	8 cut(s)	45, 205, 233, 260, 363, 384, 399, 414
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	323
MalI	GATC	3 cut(s)	81, 209, 399
MboI	GATC	3 cut(s)	79, 207, 397
MboII	GAAGA	4 cut(s)	37, 57, 318, 464
MluCI	AATT	2 cut(s)	113, 410
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	317, 429
MnlI	CCTC	7 cut(s)	213, 225, 257, 288, 295, 412, 418
MseI	TTAA	1 cut(s)	434
MspI	CCGG	2 cut(s)	371, 386
MspR9I	CCNGG	2 cut(s)	248, 371
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	148
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	3 cut(s)	79, 207, 397
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	313
NmeAIII	GCCGAG	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	56, 241, 256
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	79, 207, 397
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	248, 371
SetI	ASST	8 cut(s)	40, 147, 196, 205, 268, 306, 326, 445
SfcI	CTRYAG	1 cut(s)	402
Sse9I	AATT	2 cut(s)	113, 410
SsiI	CCGC	4 cut(s)	72, 83, 89, 173
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	246, 369
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	8, 159
TasI	AATT	2 cut(s)	113, 410
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	56, 241, 256
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	276
XapI	RAATTY	1 cut(s)	113
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.